Wall clock time and date at job start Tue Mar 31 2020 20:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 109.88015 * 2 1 4 4 C 1.54330 * 109.88061 * 238.98441 * 2 1 3 5 5 H 1.08999 * 110.72284 * 336.93006 * 4 2 1 6 6 N 1.46494 * 110.71879 * 100.03500 * 4 2 1 7 7 C 1.36945 * 119.99612 * 202.55997 * 6 4 2 8 8 H 1.07999 * 120.00077 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99637 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46819 * 59.99973 * 11 9 7 13 13 H 1.48494 * 109.47285 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47086 * 300.00269 * 11 9 7 15 15 C 1.55159 * 103.09869 * 218.48314 * 4 2 1 16 16 C 1.55121 * 101.49016 * 35.28404 * 15 4 2 17 17 N 1.47026 * 109.87943 * 121.17905 * 2 1 3 18 18 C 1.34770 * 125.65019 * 298.31881 * 17 2 1 19 19 O 1.21281 * 119.99782 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00555 * 180.02562 * 18 17 2 21 21 C 1.52991 * 109.47370 * 180.02562 * 20 18 17 22 22 C 1.50705 * 109.47267 * 179.97438 * 21 20 18 23 23 C 1.38253 * 120.00314 * 264.72942 * 22 21 20 24 24 C 1.38217 * 120.07057 * 179.77068 * 23 22 21 25 25 C 1.38254 * 120.06909 * 0.49706 * 24 23 22 26 26 C 1.38369 * 119.99974 * 359.75440 * 25 24 23 27 27 F 1.35104 * 120.03221 * 180.02562 * 26 25 24 28 28 C 1.38375 * 119.99753 * 84.99937 * 22 21 20 29 29 F 1.35102 * 120.03461 * 359.95359 * 28 22 21 30 30 H 1.09000 * 109.47709 * 181.01507 * 1 2 3 31 31 H 1.09004 * 109.47299 * 301.01738 * 1 2 3 32 32 H 1.09003 * 109.46915 * 61.01114 * 1 2 3 33 33 H 0.96995 * 120.00290 * 22.82888 * 6 4 2 34 34 H 0.97005 * 120.00046 * 179.97438 * 10 9 7 35 35 H 1.09004 * 111.00139 * 153.49299 * 15 4 2 36 36 H 1.09009 * 111.00441 * 277.33629 * 15 4 2 37 37 H 1.09004 * 110.42030 * 204.29460 * 16 15 4 38 38 H 1.08994 * 110.20835 * 82.04225 * 16 15 4 39 39 H 1.09002 * 109.46710 * 300.00207 * 20 18 17 40 40 H 1.08996 * 109.47026 * 59.99205 * 20 18 17 41 41 H 1.09002 * 109.47343 * 299.99783 * 21 20 18 42 42 H 1.08999 * 109.47633 * 60.00118 * 21 20 18 43 43 H 1.08006 * 119.96362 * 0.02562 * 23 22 21 44 44 H 1.08002 * 119.96374 * 180.23167 * 24 23 22 45 45 H 1.07998 * 119.99514 * 179.77260 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3039 -1.4414 -1.6222 6 7 2.4555 0.1992 -2.2872 7 6 2.5064 -0.2040 -3.5949 8 1 2.2514 -1.2202 -3.8570 9 6 2.8856 0.6935 -4.5836 10 7 3.1968 1.9318 -4.2642 11 14 2.9556 0.1434 -6.3674 12 1 1.6103 -0.3162 -6.7968 13 1 3.3849 1.2810 -7.2198 14 1 3.9266 -0.9720 -6.5037 15 6 3.2868 -1.5169 -0.6979 16 6 2.8143 -1.8806 0.7341 17 7 2.0299 -0.7158 1.1829 18 6 1.8084 -0.3649 2.4652 19 8 1.1451 0.6182 2.7189 20 6 2.3850 -1.1940 3.5837 21 6 1.9872 -0.5830 4.9288 22 6 2.5633 -1.4124 6.0474 23 6 1.7956 -2.3939 6.6463 24 6 2.3241 -3.1587 7.6691 25 6 3.6182 -2.9368 8.1024 26 6 4.3873 -1.9518 7.5086 27 9 5.6521 -1.7348 7.9311 28 6 3.8588 -1.1879 6.4788 29 9 4.6081 -0.2259 5.8971 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3634 0.5296 0.8807 32 1 -0.3633 0.4981 -0.8989 33 1 2.6886 1.1107 -2.0513 34 1 3.4622 2.5589 -4.9551 35 1 3.4809 -2.4128 -1.2877 36 1 4.1664 -0.8737 -0.6663 37 1 3.6715 -2.0360 1.3894 38 1 2.1884 -2.7726 0.7089 39 1 1.9984 -2.2110 3.5185 40 1 3.4716 -1.2123 3.4996 41 1 2.3734 0.4342 4.9942 42 1 0.9006 -0.5651 5.0127 43 1 0.7832 -2.5661 6.3118 44 1 1.7242 -3.9275 8.1333 45 1 4.0287 -3.5326 8.9042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987620428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:03 Heat of formation + Delta-G solvation = -112.113727 kcal Electronic energy + Delta-G solvation = -28705.733800 eV Core-core repulsion = 24358.300793 eV Total energy + Delta-G solvation = -4347.433006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.50678 -49.59978 -41.30197 -40.03980 -38.83632 -35.91098 -35.10704 -33.39677 -32.30591 -31.25779 -31.22888 -30.20385 -26.84648 -26.22472 -24.77440 -23.78887 -23.65963 -22.44133 -21.52285 -19.99804 -19.13940 -18.90971 -18.30900 -18.21132 -17.67515 -17.40815 -17.24587 -16.58253 -16.40374 -16.01541 -15.72181 -15.71169 -15.47442 -15.36265 -14.92803 -14.64971 -14.38996 -14.30836 -14.20430 -13.70149 -13.52161 -13.50402 -13.26051 -13.10782 -12.92048 -12.88150 -12.71662 -12.60681 -12.51605 -12.21368 -12.12668 -12.10301 -12.03308 -11.71903 -11.53858 -10.93962 -10.81439 -9.87273 -9.73597 -9.65408 -9.03215 -7.94147 -5.24453 -0.05077 -0.00860 1.48885 1.51906 1.57820 1.63293 1.94754 2.42517 2.57534 2.80303 3.27520 3.37259 3.43509 3.63734 3.76294 3.76573 3.84424 3.93192 4.01267 4.11647 4.18776 4.23590 4.25683 4.36816 4.42527 4.52136 4.54244 4.65914 4.68553 4.76927 4.83743 4.93357 4.97608 5.03197 5.06161 5.11116 5.22990 5.23736 5.24355 5.34582 5.36063 5.46776 5.54357 5.80359 6.25852 6.59816 7.16070 7.32010 8.04525 8.28073 9.29251 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.002097 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.276530 B =13348.081893 C =13738.747508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.131 3.869 3 H 0.039 0.961 4 C 0.170 3.830 5 H 0.073 0.927 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.973 5.973 11 Si 0.975 3.025 12 H -0.276 1.276 13 H -0.301 1.301 14 H -0.275 1.275 15 C -0.150 4.150 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.521 3.479 19 O -0.584 6.584 20 C -0.119 4.119 21 C -0.061 4.061 22 C -0.091 4.091 23 C -0.088 4.088 24 C -0.083 4.083 25 C -0.124 4.124 26 C 0.043 3.957 27 F -0.146 7.146 28 C 0.039 3.961 29 F -0.147 7.147 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.370 0.630 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.169 0.831 44 H 0.180 0.820 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -17.361 26.958 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.057 0.943 4 C 0.060 3.940 5 H 0.091 0.909 6 N -0.370 5.370 7 C -0.368 4.368 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.202 1.202 13 H -0.228 1.228 14 H -0.201 1.201 15 C -0.191 4.191 16 C -0.016 4.016 17 N -0.344 5.344 18 C 0.312 3.688 19 O -0.465 6.465 20 C -0.158 4.158 21 C -0.099 4.099 22 C -0.092 4.092 23 C -0.106 4.106 24 C -0.101 4.101 25 C -0.143 4.143 26 C 0.023 3.977 27 F -0.124 7.124 28 C 0.019 3.981 29 F -0.126 7.126 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.201 0.799 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.187 0.813 44 H 0.197 0.803 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.457 -16.886 26.991 32.025 hybrid contribution 1.099 1.412 -1.325 2.227 sum -2.357 -15.473 25.666 30.062 Atomic orbital electron populations 1.21913 0.94049 1.02516 1.01522 1.21614 0.95021 0.95236 0.85525 0.94292 1.21456 0.94999 0.91021 0.86478 0.90872 1.42543 1.80567 1.10810 1.03045 1.19597 1.36714 0.96204 0.84308 0.89769 1.25612 1.03101 0.95959 1.02335 1.69836 1.54075 1.05058 1.33350 0.85190 0.78109 0.76549 0.79772 1.20228 1.22783 1.20075 1.23438 0.98886 1.01237 0.95549 1.22567 0.95863 0.88120 0.95093 1.48665 1.52191 1.29027 1.04527 1.20949 0.79855 0.85131 0.82860 1.90673 1.42373 1.29650 1.83789 1.21610 1.02666 1.01000 0.90538 1.20212 1.02406 0.97450 0.89856 1.19887 0.91223 0.99192 0.98907 1.21473 1.01186 0.92796 0.95169 1.21559 0.93818 0.99288 0.95410 1.21480 0.95101 0.96438 1.01266 1.18084 0.81175 1.00522 0.97894 1.91492 1.37422 1.94395 1.89135 1.17984 0.91659 0.91518 0.96910 1.91484 1.76179 1.61566 1.83375 0.90923 0.92850 0.92662 0.79870 0.94146 0.89132 0.93070 0.88565 0.88229 0.85113 0.88512 0.92312 0.88319 0.81329 0.80259 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.09 71.98 0.65 -4.01 16 2 C 0.13 4.64 3.21 45.34 0.15 4.79 16 3 H 0.04 1.67 7.70 -2.39 -0.02 1.65 16 4 C 0.17 6.34 3.12 46.18 0.14 6.49 16 5 H 0.07 2.63 7.81 -2.39 -0.02 2.61 16 6 N -0.73 -36.10 5.24 -317.32 -1.66 -37.76 16 7 C -0.24 -12.66 9.97 84.03 0.84 -11.82 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 10 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 11 Si 0.97 45.36 29.55 68.60 2.03 47.38 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C -0.15 -4.57 6.79 32.06 0.22 -4.36 16 16 C 0.11 2.30 6.70 86.93 0.58 2.88 16 17 N -0.61 -17.41 3.07 -787.63 -2.41 -19.82 16 18 C 0.52 14.68 7.64 87.66 0.67 15.35 16 19 O -0.58 -21.21 15.03 -3.03 -0.05 -21.26 16 20 C -0.12 -2.16 4.69 29.84 0.14 -2.02 16 21 C -0.06 -1.14 4.41 29.85 0.13 -1.01 16 22 C -0.09 -1.38 5.14 -19.83 -0.10 -1.48 16 23 C -0.09 -0.71 9.68 22.27 0.22 -0.49 16 24 C -0.08 -0.44 10.04 22.27 0.22 -0.22 16 25 C -0.12 -1.17 10.02 22.30 0.22 -0.95 16 26 C 0.04 0.75 7.31 22.41 0.16 0.92 16 27 F -0.15 -3.12 17.18 44.97 0.77 -2.35 16 28 C 0.04 0.78 7.25 22.41 0.16 0.95 16 29 F -0.15 -3.81 16.48 44.97 0.74 -3.07 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.84 6.91 -2.39 -0.02 1.82 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.37 20.39 7.54 -92.71 -0.70 19.69 16 34 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 35 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.10 1.64 7.48 -2.38 -0.02 1.63 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.75 7.85 -2.39 -0.02 1.73 16 41 H 0.06 1.43 7.75 -2.39 -0.02 1.41 16 42 H 0.10 1.66 8.01 -2.39 -0.02 1.64 16 43 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 45 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -74.38 381.69 4.89 -69.49 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.31 Total: 25.88 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.88 Total: 1.06 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -3.79 Total: -117.13 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 1.51 Total: -5.42 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.38 4.89 -69.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987620428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.626 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds