Wall clock time and date at job start Tue Mar 31 2020 20:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.86963 * 2 1 4 4 C 1.54319 * 109.88703 * 121.02068 * 2 1 3 5 5 H 1.09006 * 110.71721 * 23.06905 * 4 2 1 6 6 N 1.46498 * 110.71850 * 259.97420 * 4 2 1 7 7 C 1.36943 * 119.99727 * 157.44028 * 6 4 2 8 8 H 1.07998 * 120.00392 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99694 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00129 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00122 * 11 9 7 15 15 C 1.55151 * 103.10409 * 141.51915 * 4 2 1 16 16 C 1.55124 * 101.48586 * 324.72049 * 15 4 2 17 17 N 1.47029 * 109.87913 * 238.83274 * 2 1 3 18 18 C 1.34773 * 125.65353 * 61.60263 * 17 2 1 19 19 O 1.21280 * 119.99946 * 0.02562 * 18 17 2 20 20 C 1.50692 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.47211 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47411 * 179.97438 * 21 20 18 23 23 C 1.38256 * 119.99947 * 100.00241 * 22 21 20 24 24 C 1.38210 * 120.07130 * 179.97438 * 23 22 21 25 25 C 1.38252 * 120.07200 * 0.02562 * 24 23 22 26 26 C 1.38371 * 119.99723 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.03395 * 180.02562 * 26 25 24 28 28 C 1.38368 * 119.99958 * 279.72689 * 22 21 20 29 29 F 1.35094 * 120.03899 * 359.97438 * 28 22 21 30 30 H 1.08996 * 109.46781 * 298.97906 * 1 2 3 31 31 H 1.08995 * 109.47239 * 58.97666 * 1 2 3 32 32 H 1.09001 * 109.46919 * 178.98000 * 1 2 3 33 33 H 0.96998 * 120.00095 * 337.43487 * 6 4 2 34 34 H 0.97001 * 119.99952 * 359.97438 * 10 9 7 35 35 H 1.09006 * 111.00487 * 82.66416 * 15 4 2 36 36 H 1.09005 * 111.00867 * 206.51378 * 15 4 2 37 37 H 1.09003 * 110.20644 * 277.95185 * 16 15 4 38 38 H 1.09006 * 110.51051 * 155.75478 * 16 15 4 39 39 H 1.08999 * 109.47355 * 299.99590 * 20 18 17 40 40 H 1.09001 * 109.47841 * 59.99972 * 20 18 17 41 41 H 1.09003 * 109.47381 * 300.00277 * 21 20 18 42 42 H 1.09007 * 109.46953 * 59.99687 * 21 20 18 43 43 H 1.08005 * 119.96533 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.96202 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00441 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2436 5 1 1.3041 -1.4415 1.6219 6 7 2.4556 0.1991 2.2871 7 6 2.5065 -0.2042 3.5948 8 1 2.2510 -1.2202 3.8569 9 6 2.8867 0.6930 4.5835 10 7 3.1976 1.9314 4.2642 11 14 2.9555 0.1430 6.3673 12 1 3.3872 1.2800 7.2196 13 1 3.9250 -0.9735 6.5041 14 1 1.6096 -0.3148 6.7965 15 6 3.2870 -1.5168 0.6977 16 6 2.8145 -1.8803 -0.7344 17 7 2.0300 -0.7156 -1.1831 18 6 1.8073 -0.3653 -2.4653 19 8 1.1435 0.6175 -2.7189 20 6 2.3832 -1.1948 -3.5839 21 6 1.9841 -0.5845 -4.9290 22 6 2.5604 -1.4136 -6.0476 23 6 1.7639 -2.3282 -6.7114 24 6 2.2908 -3.0890 -7.7379 25 6 3.6157 -2.9376 -8.1028 26 6 4.4158 -2.0239 -7.4398 27 9 5.7104 -1.8749 -7.7961 28 6 3.8853 -1.2556 -6.4142 29 9 4.6627 -0.3578 -5.7702 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5296 -0.8806 32 1 -0.3633 -1.0275 -0.0183 33 1 2.6849 1.1118 2.0518 34 1 3.1616 2.2171 3.3379 35 1 4.1665 -0.8735 0.6661 36 1 3.4812 -2.4128 1.2873 37 1 2.1887 -2.7724 -0.7093 38 1 3.6706 -2.0368 -1.3909 39 1 3.4698 -1.2126 -3.5008 40 1 1.9970 -2.2120 -3.5180 41 1 0.8974 -0.5669 -5.0119 42 1 2.3700 0.4328 -4.9952 43 1 0.7288 -2.4482 -6.4275 44 1 1.6671 -3.8032 -8.2549 45 1 4.0262 -3.5324 -8.9054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987620431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:08 Heat of formation + Delta-G solvation = -93.472685 kcal Electronic energy + Delta-G solvation = -28772.616102 eV Core-core repulsion = 24425.991432 eV Total energy + Delta-G solvation = -4346.624670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.79875 -48.87568 -40.19263 -39.44285 -37.61447 -34.43444 -34.37604 -31.85928 -31.00967 -30.74699 -30.10889 -28.78337 -25.42580 -25.03237 -23.25767 -23.10776 -22.65353 -21.66355 -20.24292 -18.81028 -18.27715 -17.69596 -17.53742 -17.31954 -16.75285 -16.61778 -16.14929 -15.42961 -15.28810 -15.21882 -14.88645 -14.82812 -14.48959 -13.86859 -13.68501 -13.55539 -13.49124 -13.29137 -13.09760 -12.81616 -12.60210 -12.44449 -12.30359 -12.08946 -11.99471 -11.65293 -11.55994 -11.32148 -11.24846 -10.96972 -10.66950 -10.56849 -10.24733 -10.02065 -9.74749 -9.32288 -9.22067 -9.17000 -8.97324 -8.48570 -7.12957 -6.16240 -3.18203 0.48444 0.49688 2.70909 2.85151 3.09225 3.35821 3.48651 3.51783 3.69614 3.95024 4.04346 4.23961 4.42246 4.60003 4.61616 4.63409 4.80074 4.82268 4.93566 5.13879 5.21377 5.27315 5.29317 5.36007 5.41178 5.42299 5.53358 5.53930 5.62998 5.68398 5.70581 5.81001 5.85688 5.88681 5.94418 5.99743 6.20156 6.30503 6.35025 6.49297 6.51485 6.62794 6.81506 7.68124 7.73991 8.25849 8.68609 9.13136 9.99711 10.13421 11.31531 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.002116 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.107122 B =13228.354121 C =13668.127248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.182 3.818 5 H 0.067 0.933 6 N -0.726 5.726 7 C -0.335 4.335 8 H 0.066 0.934 9 C -0.042 4.042 10 N -0.940 5.940 11 Si 1.081 2.919 12 H -0.285 1.285 13 H -0.295 1.295 14 H -0.294 1.294 15 C -0.155 4.155 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.066 4.066 22 C -0.086 4.086 23 C -0.097 4.097 24 C -0.098 4.098 25 C -0.132 4.132 26 C 0.068 3.932 27 F -0.129 7.129 28 C 0.070 3.930 29 F -0.124 7.124 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.369 0.631 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 -13.436 -25.542 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.085 0.915 6 N -0.368 5.368 7 C -0.466 4.466 8 H 0.084 0.916 9 C -0.240 4.240 10 N -0.585 5.585 11 Si 0.911 3.089 12 H -0.210 1.210 13 H -0.222 1.222 14 H -0.222 1.222 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.422 6.422 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.151 4.151 26 C 0.048 3.952 27 F -0.108 7.108 28 C 0.049 3.951 29 F -0.102 7.102 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.168 -12.539 -24.063 27.220 hybrid contribution 0.355 -0.240 -1.644 1.699 sum -1.813 -12.778 -25.707 28.765 Atomic orbital electron populations 1.22033 0.94795 1.01613 1.02685 1.21921 0.94531 0.96754 0.84637 0.90795 1.21177 0.93580 0.91402 0.86853 0.91520 1.42361 1.81362 1.09821 1.03227 1.19997 1.44368 0.97973 0.84265 0.91575 1.25809 0.99351 0.94444 1.04411 1.70884 1.50965 1.16815 1.19792 0.83239 0.75885 0.74886 0.74889 1.21014 1.22208 1.22185 1.23585 1.01264 1.01798 0.92999 1.22426 0.94648 0.88299 0.97184 1.48582 1.52050 1.28615 1.05031 1.20129 0.80574 0.85342 0.82380 1.90688 1.40439 1.27807 1.83250 1.21605 1.02761 1.00268 0.92505 1.20327 1.02162 0.98583 0.89282 1.19962 0.91255 0.98636 0.98814 1.21115 1.00491 0.94637 0.95321 1.21100 0.94305 0.99280 0.96943 1.21109 0.94336 0.98568 1.01098 1.17726 0.80007 0.99910 0.97559 1.91541 1.33484 1.94831 1.90903 1.17600 0.89894 0.92616 0.94960 1.91551 1.73966 1.64778 1.79903 0.91271 0.91925 0.93057 0.79747 0.93285 0.90823 0.90430 0.91611 0.91263 0.88876 0.88679 0.88989 0.89327 0.84039 0.84124 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.09 37.16 0.34 -2.20 16 2 C 0.13 2.20 3.21 -66.95 -0.22 1.99 16 3 H 0.07 1.47 7.70 -51.93 -0.40 1.07 16 4 C 0.18 3.47 3.12 -66.10 -0.21 3.27 16 5 H 0.07 1.29 7.81 -51.93 -0.41 0.89 16 6 N -0.73 -17.59 5.24 -51.66 -0.27 -17.86 16 7 C -0.34 -9.09 9.97 -15.06 -0.15 -9.24 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 10 N -0.94 -28.74 13.70 55.49 0.76 -27.98 16 11 Si 1.08 25.38 29.92 -169.99 -5.09 20.30 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.16 -2.52 6.79 -24.47 -0.17 -2.69 16 16 C 0.10 1.24 6.70 -2.41 -0.02 1.23 16 17 N -0.61 -9.12 3.07 -162.88 -0.50 -9.62 16 18 C 0.53 7.69 7.64 -10.99 -0.08 7.60 16 19 O -0.54 -9.69 15.03 5.56 0.08 -9.61 16 20 C -0.13 -1.35 4.68 -27.89 -0.13 -1.48 16 21 C -0.07 -0.64 4.36 -27.88 -0.12 -0.76 16 22 C -0.09 -0.72 5.14 -104.57 -0.54 -1.26 16 23 C -0.10 -0.59 9.67 -39.58 -0.38 -0.97 16 24 C -0.10 -0.49 10.04 -39.59 -0.40 -0.89 16 25 C -0.13 -0.83 10.02 -39.53 -0.40 -1.22 16 26 C 0.07 0.62 7.31 -39.36 -0.29 0.33 16 27 F -0.13 -1.36 17.18 2.25 0.04 -1.32 16 28 C 0.07 0.70 7.25 -39.37 -0.29 0.41 16 29 F -0.12 -1.50 16.57 2.25 0.04 -1.46 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.06 6.90 -51.93 -0.36 0.71 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.37 9.41 6.37 -40.82 -0.26 9.15 16 34 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.74 7.47 -51.93 -0.39 0.35 16 39 H 0.09 0.94 7.85 -51.93 -0.41 0.54 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.84 7.96 -51.93 -0.41 0.43 16 42 H 0.09 1.01 7.89 -51.93 -0.41 0.60 16 43 H 0.14 0.57 8.04 -52.48 -0.42 0.15 16 44 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 45 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -32.98 380.08 -8.67 -41.65 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.33 Total: 7.35 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.13 Total: -7.17 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.01 Total: -55.47 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.98 -8.67 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987620431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.824 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds