Wall clock time and date at job start Tue Mar 31 2020 20:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.86963 * 2 1 4 4 C 1.54319 * 109.88703 * 121.02068 * 2 1 3 5 5 H 1.09006 * 110.71721 * 23.06905 * 4 2 1 6 6 N 1.46498 * 110.71850 * 259.97420 * 4 2 1 7 7 C 1.36943 * 119.99727 * 157.44028 * 6 4 2 8 8 H 1.07998 * 120.00392 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99694 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00129 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00122 * 11 9 7 15 15 C 1.55151 * 103.10409 * 141.51915 * 4 2 1 16 16 C 1.55124 * 101.48586 * 324.72049 * 15 4 2 17 17 N 1.47029 * 109.87913 * 238.83274 * 2 1 3 18 18 C 1.34773 * 125.65353 * 61.60263 * 17 2 1 19 19 O 1.21280 * 119.99946 * 0.02562 * 18 17 2 20 20 C 1.50692 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.47211 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47411 * 179.97438 * 21 20 18 23 23 C 1.38256 * 119.99947 * 100.00241 * 22 21 20 24 24 C 1.38210 * 120.07130 * 179.97438 * 23 22 21 25 25 C 1.38252 * 120.07200 * 0.02562 * 24 23 22 26 26 C 1.38371 * 119.99723 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.03395 * 180.02562 * 26 25 24 28 28 C 1.38368 * 119.99958 * 279.72689 * 22 21 20 29 29 F 1.35094 * 120.03899 * 359.97438 * 28 22 21 30 30 H 1.08996 * 109.46781 * 298.97906 * 1 2 3 31 31 H 1.08995 * 109.47239 * 58.97666 * 1 2 3 32 32 H 1.09001 * 109.46919 * 178.98000 * 1 2 3 33 33 H 0.96998 * 120.00095 * 337.43487 * 6 4 2 34 34 H 0.97001 * 119.99952 * 359.97438 * 10 9 7 35 35 H 1.09006 * 111.00487 * 82.66416 * 15 4 2 36 36 H 1.09005 * 111.00867 * 206.51378 * 15 4 2 37 37 H 1.09003 * 110.20644 * 277.95185 * 16 15 4 38 38 H 1.09006 * 110.51051 * 155.75478 * 16 15 4 39 39 H 1.08999 * 109.47355 * 299.99590 * 20 18 17 40 40 H 1.09001 * 109.47841 * 59.99972 * 20 18 17 41 41 H 1.09003 * 109.47381 * 300.00277 * 21 20 18 42 42 H 1.09007 * 109.46953 * 59.99687 * 21 20 18 43 43 H 1.08005 * 119.96533 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.96202 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00441 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2436 5 1 1.3041 -1.4415 1.6219 6 7 2.4556 0.1991 2.2871 7 6 2.5065 -0.2042 3.5948 8 1 2.2510 -1.2202 3.8569 9 6 2.8867 0.6930 4.5835 10 7 3.1976 1.9314 4.2642 11 14 2.9555 0.1430 6.3673 12 1 3.3872 1.2800 7.2196 13 1 3.9250 -0.9735 6.5041 14 1 1.6096 -0.3148 6.7965 15 6 3.2870 -1.5168 0.6977 16 6 2.8145 -1.8803 -0.7344 17 7 2.0300 -0.7156 -1.1831 18 6 1.8073 -0.3653 -2.4653 19 8 1.1435 0.6175 -2.7189 20 6 2.3832 -1.1948 -3.5839 21 6 1.9841 -0.5845 -4.9290 22 6 2.5604 -1.4136 -6.0476 23 6 1.7639 -2.3282 -6.7114 24 6 2.2908 -3.0890 -7.7379 25 6 3.6157 -2.9376 -8.1028 26 6 4.4158 -2.0239 -7.4398 27 9 5.7104 -1.8749 -7.7961 28 6 3.8853 -1.2556 -6.4142 29 9 4.6627 -0.3578 -5.7702 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5296 -0.8806 32 1 -0.3633 -1.0275 -0.0183 33 1 2.6849 1.1118 2.0518 34 1 3.1616 2.2171 3.3379 35 1 4.1665 -0.8735 0.6661 36 1 3.4812 -2.4128 1.2873 37 1 2.1887 -2.7724 -0.7093 38 1 3.6706 -2.0368 -1.3909 39 1 3.4698 -1.2126 -3.5008 40 1 1.9970 -2.2120 -3.5180 41 1 0.8974 -0.5669 -5.0119 42 1 2.3700 0.4328 -4.9952 43 1 0.7288 -2.4482 -6.4275 44 1 1.6671 -3.8032 -8.2549 45 1 4.0262 -3.5324 -8.9054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987620431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:06 Heat of formation + Delta-G solvation = -112.644518 kcal Electronic energy + Delta-G solvation = -28773.447455 eV Core-core repulsion = 24425.991432 eV Total energy + Delta-G solvation = -4347.456023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.52853 -49.62113 -41.38320 -40.07054 -38.94180 -36.26180 -35.14694 -33.44609 -32.37711 -31.28026 -31.16727 -30.15626 -26.69375 -26.24403 -24.92163 -23.81228 -23.72660 -22.50968 -21.66963 -20.07992 -19.37415 -18.93883 -18.33052 -18.24250 -17.69021 -17.46982 -17.30199 -16.77388 -16.38691 -16.06326 -15.91343 -15.73435 -15.58518 -15.39778 -14.99044 -14.72481 -14.45746 -14.33737 -14.27118 -13.72998 -13.68604 -13.55573 -13.42065 -13.07856 -12.93150 -12.75865 -12.72246 -12.67310 -12.39931 -12.18119 -12.12672 -12.09000 -11.87976 -11.71841 -11.29398 -10.96870 -10.85291 -9.89696 -9.75659 -9.73489 -9.15602 -8.39502 -5.35337 -0.07190 -0.03020 1.56633 1.59440 1.69589 1.84998 1.87382 2.40248 2.72258 2.78154 3.23343 3.35950 3.41077 3.56850 3.61471 3.73461 3.75967 3.88551 3.92163 4.07166 4.07676 4.18662 4.23114 4.27139 4.30019 4.40713 4.48878 4.58776 4.62887 4.69140 4.80812 4.84508 4.93950 4.96191 5.00936 5.07480 5.13841 5.14194 5.21762 5.26455 5.32947 5.36622 5.60554 5.78207 6.46122 6.52108 7.04117 7.09425 7.93407 8.07416 9.11632 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022775 B = 0.002116 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.107122 B =13228.354121 C =13668.127248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.131 3.869 3 H 0.038 0.962 4 C 0.175 3.825 5 H 0.071 0.929 6 N -0.742 5.742 7 C -0.325 4.325 8 H 0.075 0.925 9 C -0.107 4.107 10 N -0.978 5.978 11 Si 1.129 2.871 12 H -0.298 1.298 13 H -0.274 1.274 14 H -0.276 1.276 15 C -0.149 4.149 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.522 3.478 19 O -0.583 6.583 20 C -0.120 4.120 21 C -0.061 4.061 22 C -0.092 4.092 23 C -0.089 4.089 24 C -0.083 4.083 25 C -0.124 4.124 26 C 0.043 3.957 27 F -0.145 7.145 28 C 0.040 3.960 29 F -0.147 7.147 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.356 0.644 34 H 0.241 0.759 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.169 0.831 44 H 0.180 0.820 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 -17.580 -27.257 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.057 0.943 4 C 0.065 3.935 5 H 0.089 0.911 6 N -0.383 5.383 7 C -0.456 4.456 8 H 0.093 0.907 9 C -0.298 4.298 10 N -0.626 5.626 11 Si 0.953 3.047 12 H -0.225 1.225 13 H -0.200 1.200 14 H -0.202 1.202 15 C -0.190 4.190 16 C -0.016 4.016 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.463 6.463 20 C -0.159 4.159 21 C -0.099 4.099 22 C -0.093 4.093 23 C -0.106 4.106 24 C -0.101 4.101 25 C -0.143 4.143 26 C 0.023 3.977 27 F -0.124 7.124 28 C 0.020 3.980 29 F -0.126 7.126 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.188 0.812 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.186 0.814 44 H 0.197 0.803 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.418 -16.756 -25.833 30.981 hybrid contribution 0.682 0.999 -1.244 1.735 sum -2.736 -15.757 -27.077 31.447 Atomic orbital electron populations 1.21913 0.93948 1.02592 1.01548 1.21605 0.95109 0.95132 0.85541 0.94333 1.21387 0.94989 0.90860 0.86238 0.91109 1.42567 1.81847 1.10209 1.03716 1.20362 1.41817 0.98022 0.85418 0.90669 1.27245 0.99863 0.94169 1.08535 1.71000 1.54208 1.18456 1.18904 0.82621 0.77115 0.74614 0.70323 1.22457 1.20039 1.20178 1.23409 0.98738 1.01195 0.95648 1.22559 0.95933 0.88156 0.94934 1.48657 1.52234 1.29034 1.04516 1.20955 0.79810 0.85132 0.82787 1.90673 1.42267 1.29615 1.83758 1.21618 1.02636 1.00992 0.90655 1.20216 1.02462 0.97452 0.89737 1.19880 0.90790 0.99529 0.99068 1.21477 1.01304 0.93211 0.94648 1.21559 0.93843 0.98778 0.95901 1.21485 0.94635 0.97340 1.00797 1.18086 0.79884 1.01280 0.98403 1.91492 1.34710 1.95107 1.91110 1.17973 0.90646 0.93320 0.96092 1.91482 1.74728 1.65822 1.80541 0.92795 0.92616 0.90910 0.81191 0.94814 0.93157 0.89249 0.88230 0.88447 0.88568 0.85191 0.88250 0.92187 0.81366 0.80258 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.09 71.98 0.65 -4.04 16 2 C 0.13 4.66 3.21 45.34 0.15 4.81 16 3 H 0.04 1.64 7.70 -2.39 -0.02 1.62 16 4 C 0.17 6.64 3.12 46.18 0.14 6.78 16 5 H 0.07 2.64 7.81 -2.38 -0.02 2.62 16 6 N -0.74 -36.93 5.24 -317.34 -1.66 -38.59 16 7 C -0.33 -17.72 9.97 84.03 0.84 -16.88 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 C -0.11 -6.18 5.50 84.86 0.47 -5.71 16 10 N -0.98 -61.87 13.70 21.65 0.30 -61.57 16 11 Si 1.13 51.24 29.92 68.60 2.05 53.29 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 15 C -0.15 -4.64 6.79 32.06 0.22 -4.42 16 16 C 0.11 2.36 6.70 86.93 0.58 2.95 16 17 N -0.61 -17.50 3.07 -787.62 -2.42 -19.92 16 18 C 0.52 14.71 7.64 87.66 0.67 15.38 16 19 O -0.58 -21.01 15.03 -3.03 -0.05 -21.06 16 20 C -0.12 -2.20 4.68 29.85 0.14 -2.06 16 21 C -0.06 -1.12 4.36 29.85 0.13 -0.99 16 22 C -0.09 -1.38 5.14 -19.83 -0.10 -1.48 16 23 C -0.09 -0.71 9.67 22.27 0.22 -0.49 16 24 C -0.08 -0.44 10.04 22.27 0.22 -0.21 16 25 C -0.12 -1.16 10.02 22.30 0.22 -0.93 16 26 C 0.04 0.75 7.31 22.41 0.16 0.92 16 27 F -0.15 -3.10 17.18 44.97 0.77 -2.33 16 28 C 0.04 0.78 7.25 22.41 0.16 0.94 16 29 F -0.15 -3.75 16.57 44.97 0.75 -3.01 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.91 6.90 -2.39 -0.02 1.90 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.36 19.24 6.37 -92.71 -0.59 18.65 16 34 H 0.24 15.40 6.77 -92.71 -0.63 14.77 16 35 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.70 7.47 -2.38 -0.02 1.69 16 39 H 0.10 1.77 7.85 -2.39 -0.02 1.75 16 40 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.64 7.96 -2.39 -0.02 1.62 16 42 H 0.06 1.43 7.89 -2.38 -0.02 1.41 16 43 H 0.17 0.47 8.04 -2.91 -0.02 0.44 16 44 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 45 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -76.70 380.08 5.19 -71.52 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.57 Total: 27.11 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.87 Total: -5.45 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -3.78 Total: -120.08 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.52 Total: -5.33 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -76.70 5.19 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987620431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.126 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds