Wall clock time and date at job start Tue Mar 31 2020 21:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47265 * 2 1 4 4 C 1.50701 * 109.46844 * 240.00035 * 2 1 3 5 5 O 1.21289 * 119.99987 * 245.81768 * 4 2 1 6 6 N 1.34776 * 120.00394 * 65.81886 * 4 2 1 7 7 C 1.48212 * 119.96684 * 3.68733 * 6 4 2 8 8 C 1.47603 * 110.03831 * 102.55193 * 7 6 4 9 9 C 1.53797 * 111.84526 * 58.43896 * 8 7 6 10 10 N 1.43465 * 107.95370 * 281.54282 * 9 8 7 11 11 C 1.36937 * 118.93929 * 273.62727 * 10 9 8 12 12 H 1.08004 * 119.99909 * 21.50851 * 11 10 9 13 13 C 1.38808 * 120.00354 * 201.51530 * 11 10 9 14 14 N 1.31619 * 120.00214 * 17.23378 * 13 11 10 15 15 Si 1.86801 * 120.00083 * 197.24360 * 13 11 10 16 16 H 1.48490 * 109.47249 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47267 * 119.99617 * 15 13 11 18 18 H 1.48507 * 109.46898 * 239.99585 * 15 13 11 19 19 C 1.48855 * 122.12194 * 93.61012 * 10 9 8 20 20 C 1.43619 * 119.97206 * 183.96420 * 6 4 2 21 21 C 1.50699 * 109.47218 * 119.99923 * 2 1 3 22 22 C 1.38260 * 119.96133 * 59.99790 * 21 2 1 23 23 C 1.38213 * 120.06774 * 179.97438 * 22 21 2 24 24 C 1.38413 * 120.00110 * 0.02562 * 23 22 21 25 25 F 1.35103 * 120.03592 * 180.02562 * 24 23 22 26 26 C 1.38645 * 119.92749 * 359.97438 * 24 23 22 27 27 F 1.35106 * 120.03518 * 180.02562 * 26 24 23 28 28 C 1.38207 * 119.96739 * 239.99626 * 21 2 1 29 29 H 1.08995 * 109.47431 * 180.78519 * 1 2 3 30 30 H 1.09002 * 109.47092 * 300.78558 * 1 2 3 31 31 H 1.09003 * 109.46925 * 60.78141 * 1 2 3 32 32 H 1.09004 * 109.32416 * 222.78334 * 7 6 4 33 33 H 1.09006 * 109.32846 * 342.24912 * 7 6 4 34 34 H 1.08997 * 109.10888 * 297.75733 * 8 7 6 35 35 H 1.09007 * 108.84216 * 178.93576 * 8 7 6 36 36 H 1.08998 * 109.76984 * 161.92609 * 9 8 7 37 37 H 1.08998 * 109.80802 * 41.17538 * 9 8 7 38 38 H 0.97001 * 120.00733 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.48246 * 200.65800 * 19 10 9 40 40 H 1.08997 * 109.49185 * 80.62916 * 19 10 9 41 41 H 1.09005 * 108.87072 * 31.42661 * 20 6 4 42 42 H 1.09004 * 108.87024 * 149.85312 * 20 6 4 43 43 H 1.07998 * 119.96628 * 359.97438 * 22 21 2 44 44 H 1.08006 * 119.99760 * 180.27307 * 23 22 21 45 45 H 1.08006 * 119.99958 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6401 -1.7544 -1.1224 6 7 1.8061 -0.1857 -2.4511 7 6 1.1357 1.1299 -2.5788 8 6 2.1308 2.1776 -2.8800 9 6 2.9048 1.8766 -4.1745 10 7 3.9023 0.8902 -3.8741 11 6 5.1190 1.3015 -3.3992 12 1 5.2169 2.2703 -2.9320 13 6 6.2267 0.4734 -3.5183 14 7 6.2070 -0.5343 -4.3648 15 14 7.7450 0.7888 -2.4769 16 1 7.5147 1.9737 -1.6121 17 1 8.0185 -0.3985 -1.6280 18 1 8.9093 1.0423 -3.3633 19 6 3.6571 -0.5660 -4.0616 20 6 2.2097 -0.9046 -3.6271 21 6 2.0323 -0.7104 1.2305 22 6 1.6978 -2.0341 1.4485 23 6 2.1578 -2.6879 2.5760 24 6 2.9537 -2.0173 3.4885 25 9 3.4041 -2.6559 4.5906 26 6 3.2891 -0.6900 3.2698 27 9 4.0663 -0.0335 4.1588 28 6 2.8269 -0.0381 2.1397 29 1 -0.3634 -1.0275 0.0141 30 1 -0.3633 0.5260 0.8829 31 1 -0.3633 0.5017 -0.8969 32 1 0.4019 1.0842 -3.3836 33 1 0.6278 1.3682 -1.6442 34 1 2.8367 2.2477 -2.0524 35 1 1.6154 3.1320 -2.9884 36 1 3.3834 2.7859 -4.5378 37 1 2.2221 1.4915 -4.9319 38 1 6.9809 -1.1132 -4.4479 39 1 4.3613 -1.1345 -3.4540 40 1 3.7915 -0.8252 -5.1117 41 1 2.1425 -1.9740 -3.4270 42 1 1.5297 -0.6571 -4.4423 43 1 1.0765 -2.5577 0.7371 44 1 1.8994 -3.7232 2.7430 45 1 3.0872 0.9961 1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989701865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:50 Heat of formation + Delta-G solvation = -60.435098 kcal Electronic energy + Delta-G solvation = -30749.921677 eV Core-core repulsion = 26404.729624 eV Total energy + Delta-G solvation = -4345.192053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.45654 -48.53425 -40.44913 -38.80159 -36.92119 -34.66325 -33.85981 -32.31023 -31.01984 -30.82637 -29.22805 -27.62490 -25.55244 -24.78365 -23.69681 -23.31375 -22.56671 -21.08624 -19.76328 -18.70948 -17.94801 -17.40263 -16.92902 -16.80607 -16.32247 -16.18957 -15.84211 -15.20456 -14.95623 -14.87974 -14.49459 -14.25716 -14.03781 -13.93998 -13.74190 -13.53203 -13.44370 -13.00936 -12.83608 -12.57967 -12.43117 -12.12380 -11.96695 -11.76476 -11.64707 -11.35117 -11.19644 -11.13699 -10.92928 -10.74108 -10.51867 -10.35502 -10.13584 -9.78512 -9.73137 -9.34190 -9.02027 -8.63003 -8.41124 -8.05148 -6.72721 -5.75687 -3.14483 0.87205 0.98933 3.01781 3.24784 3.40473 3.48548 3.49815 3.55611 3.76697 4.26294 4.38244 4.49555 4.53897 4.73578 4.95285 4.97831 5.02312 5.11832 5.17908 5.37720 5.42447 5.49615 5.58940 5.60710 5.69599 5.74862 5.76463 5.83308 5.85502 5.95827 6.02722 6.14367 6.16924 6.33941 6.35574 6.38215 6.42477 6.70694 6.72993 6.92822 6.98776 7.46779 7.65465 7.81176 7.91813 8.45903 8.65401 9.23361 9.92763 10.35817 11.32276 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004467 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.754300 B = 6266.287336 C = 7690.860327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 H 0.106 0.894 4 C 0.520 3.480 5 O -0.534 6.534 6 N -0.580 5.580 7 C 0.110 3.890 8 C -0.174 4.174 9 C 0.163 3.837 10 N -0.591 5.591 11 C -0.255 4.255 12 H 0.065 0.935 13 C 0.006 3.994 14 N -0.904 5.904 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.291 1.291 19 C 0.166 3.834 20 C 0.091 3.909 21 C -0.042 4.042 22 C -0.062 4.062 23 C -0.128 4.128 24 C 0.063 3.937 25 F -0.133 7.133 26 C 0.064 3.936 27 F -0.131 7.131 28 C -0.116 4.116 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.253 0.747 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.032 0.941 9.458 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 H 0.124 0.876 4 C 0.307 3.693 5 O -0.410 6.410 6 N -0.312 5.312 7 C -0.012 4.012 8 C -0.216 4.216 9 C 0.034 3.966 10 N -0.313 5.313 11 C -0.385 4.385 12 H 0.083 0.917 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.218 1.218 19 C 0.041 3.959 20 C -0.034 4.034 21 C -0.042 4.042 22 C -0.080 4.080 23 C -0.147 4.147 24 C 0.043 3.957 25 F -0.112 7.112 26 C 0.044 3.956 27 F -0.110 7.110 28 C -0.135 4.135 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.532 0.251 9.509 18.213 hybrid contribution 1.350 0.262 0.832 1.607 sum -14.182 0.513 10.340 17.559 Atomic orbital electron populations 1.22024 0.91905 1.03288 1.03316 1.20286 0.97615 1.00708 0.90825 0.87559 1.20055 0.79672 0.85458 0.84156 1.90712 1.40236 1.24169 1.85926 1.47282 1.58334 1.19965 1.05571 1.21150 0.94924 0.83260 1.01869 1.22039 0.99038 0.96750 1.03734 1.20225 0.91021 0.93079 0.92270 1.43719 1.11510 1.00418 1.75628 1.19164 0.85454 1.02484 1.31365 0.91694 1.24870 0.97385 0.98823 0.98180 1.70035 1.29893 1.19709 1.35249 0.86335 0.83251 0.77631 0.80227 1.20423 1.21540 1.21791 1.21893 0.90619 0.84456 0.98971 1.21987 0.99460 0.96167 0.85758 1.19247 0.96506 0.94154 0.94337 1.20874 0.98414 0.93452 0.95242 1.21026 0.98539 1.01051 0.94073 1.17683 1.01173 0.90006 0.86876 1.91507 1.87617 1.81443 1.50598 1.17553 0.97315 0.89838 0.90936 1.91518 1.72348 1.80560 1.66565 1.20959 0.98415 1.01527 0.92585 0.91720 0.91258 0.90443 0.91624 0.90102 0.91431 0.92550 0.93710 0.94849 0.93727 0.89770 0.94603 0.91259 0.92696 0.84360 0.83791 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.59 37.16 0.32 -0.97 16 2 C -0.07 -0.91 2.06 -92.92 -0.19 -1.10 16 3 H 0.11 1.25 7.39 -51.93 -0.38 0.87 16 4 C 0.52 8.79 6.87 -10.99 -0.08 8.71 16 5 O -0.53 -11.13 14.49 5.55 0.08 -11.05 16 6 N -0.58 -9.44 2.45 -176.40 -0.43 -9.87 16 7 C 0.11 1.39 4.96 -5.71 -0.03 1.37 16 8 C -0.17 -2.62 5.65 -28.92 -0.16 -2.78 16 9 C 0.16 3.08 5.63 -5.23 -0.03 3.05 16 10 N -0.59 -14.04 2.55 -172.00 -0.44 -14.47 16 11 C -0.26 -6.88 9.30 -15.06 -0.14 -7.02 16 12 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 13 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 14 N -0.90 -26.48 10.83 55.49 0.60 -25.88 16 15 Si 0.90 22.53 29.59 -169.99 -5.03 17.50 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 C 0.17 3.91 5.20 -1.75 -0.01 3.90 16 20 C 0.09 1.67 5.22 -4.58 -0.02 1.64 16 21 C -0.04 -0.55 4.46 -104.63 -0.47 -1.02 16 22 C -0.06 -0.78 7.85 -39.58 -0.31 -1.09 16 23 C -0.13 -1.56 10.02 -39.53 -0.40 -1.95 16 24 C 0.06 0.87 7.31 -39.37 -0.29 0.58 16 25 F -0.13 -1.90 17.18 2.25 0.04 -1.86 16 26 C 0.06 0.91 7.31 -39.37 -0.29 0.62 16 27 F -0.13 -1.97 17.18 2.25 0.04 -1.93 16 28 C -0.12 -1.55 9.65 -39.53 -0.38 -1.93 16 29 H 0.06 0.56 7.36 -51.93 -0.38 0.17 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.60 5.33 -51.93 -0.28 0.33 16 32 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 33 H 0.08 0.80 3.98 -51.93 -0.21 0.59 16 34 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 37 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.08 2.36 6.32 -51.93 -0.33 2.03 16 40 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 41 H 0.07 1.29 7.43 -51.93 -0.39 0.91 16 42 H 0.05 0.87 7.73 -51.93 -0.40 0.47 16 43 H 0.14 1.61 7.37 -52.49 -0.39 1.23 16 44 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.15 1.70 7.94 -52.48 -0.42 1.28 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -32.56 361.56 -8.29 -40.85 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.04 Total: -0.81 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -2.56 Total: 2.09 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.27 Total: -50.23 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.08 Total: -3.79 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.56 -8.29 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989701865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.583 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds