Wall clock time and date at job start Tue Mar 31 2020 21:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47265 * 2 1 4 4 C 1.50701 * 109.46844 * 240.00035 * 2 1 3 5 5 O 1.21289 * 119.99987 * 245.81768 * 4 2 1 6 6 N 1.34776 * 120.00394 * 65.81886 * 4 2 1 7 7 C 1.48212 * 119.96684 * 3.68733 * 6 4 2 8 8 C 1.47603 * 110.03831 * 102.55193 * 7 6 4 9 9 C 1.53797 * 111.84526 * 58.43896 * 8 7 6 10 10 N 1.43465 * 107.95370 * 281.54282 * 9 8 7 11 11 C 1.36937 * 118.93929 * 273.62727 * 10 9 8 12 12 H 1.08004 * 119.99909 * 21.50851 * 11 10 9 13 13 C 1.38808 * 120.00354 * 201.51530 * 11 10 9 14 14 N 1.31619 * 120.00214 * 17.23378 * 13 11 10 15 15 Si 1.86801 * 120.00083 * 197.24360 * 13 11 10 16 16 H 1.48490 * 109.47249 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47267 * 119.99617 * 15 13 11 18 18 H 1.48507 * 109.46898 * 239.99585 * 15 13 11 19 19 C 1.48855 * 122.12194 * 93.61012 * 10 9 8 20 20 C 1.43619 * 119.97206 * 183.96420 * 6 4 2 21 21 C 1.50699 * 109.47218 * 119.99923 * 2 1 3 22 22 C 1.38260 * 119.96133 * 59.99790 * 21 2 1 23 23 C 1.38213 * 120.06774 * 179.97438 * 22 21 2 24 24 C 1.38413 * 120.00110 * 0.02562 * 23 22 21 25 25 F 1.35103 * 120.03592 * 180.02562 * 24 23 22 26 26 C 1.38645 * 119.92749 * 359.97438 * 24 23 22 27 27 F 1.35106 * 120.03518 * 180.02562 * 26 24 23 28 28 C 1.38207 * 119.96739 * 239.99626 * 21 2 1 29 29 H 1.08995 * 109.47431 * 180.78519 * 1 2 3 30 30 H 1.09002 * 109.47092 * 300.78558 * 1 2 3 31 31 H 1.09003 * 109.46925 * 60.78141 * 1 2 3 32 32 H 1.09004 * 109.32416 * 222.78334 * 7 6 4 33 33 H 1.09006 * 109.32846 * 342.24912 * 7 6 4 34 34 H 1.08997 * 109.10888 * 297.75733 * 8 7 6 35 35 H 1.09007 * 108.84216 * 178.93576 * 8 7 6 36 36 H 1.08998 * 109.76984 * 161.92609 * 9 8 7 37 37 H 1.08998 * 109.80802 * 41.17538 * 9 8 7 38 38 H 0.97001 * 120.00733 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.48246 * 200.65800 * 19 10 9 40 40 H 1.08997 * 109.49185 * 80.62916 * 19 10 9 41 41 H 1.09005 * 108.87072 * 31.42661 * 20 6 4 42 42 H 1.09004 * 108.87024 * 149.85312 * 20 6 4 43 43 H 1.07998 * 119.96628 * 359.97438 * 22 21 2 44 44 H 1.08006 * 119.99760 * 180.27307 * 23 22 21 45 45 H 1.08006 * 119.99958 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6401 -1.7544 -1.1224 6 7 1.8061 -0.1857 -2.4511 7 6 1.1357 1.1299 -2.5788 8 6 2.1308 2.1776 -2.8800 9 6 2.9048 1.8766 -4.1745 10 7 3.9023 0.8902 -3.8741 11 6 5.1190 1.3015 -3.3992 12 1 5.2169 2.2703 -2.9320 13 6 6.2267 0.4734 -3.5183 14 7 6.2070 -0.5343 -4.3648 15 14 7.7450 0.7888 -2.4769 16 1 7.5147 1.9737 -1.6121 17 1 8.0185 -0.3985 -1.6280 18 1 8.9093 1.0423 -3.3633 19 6 3.6571 -0.5660 -4.0616 20 6 2.2097 -0.9046 -3.6271 21 6 2.0323 -0.7104 1.2305 22 6 1.6978 -2.0341 1.4485 23 6 2.1578 -2.6879 2.5760 24 6 2.9537 -2.0173 3.4885 25 9 3.4041 -2.6559 4.5906 26 6 3.2891 -0.6900 3.2698 27 9 4.0663 -0.0335 4.1588 28 6 2.8269 -0.0381 2.1397 29 1 -0.3634 -1.0275 0.0141 30 1 -0.3633 0.5260 0.8829 31 1 -0.3633 0.5017 -0.8969 32 1 0.4019 1.0842 -3.3836 33 1 0.6278 1.3682 -1.6442 34 1 2.8367 2.2477 -2.0524 35 1 1.6154 3.1320 -2.9884 36 1 3.3834 2.7859 -4.5378 37 1 2.2221 1.4915 -4.9319 38 1 6.9809 -1.1132 -4.4479 39 1 4.3613 -1.1345 -3.4540 40 1 3.7915 -0.8252 -5.1117 41 1 2.1425 -1.9740 -3.4270 42 1 1.5297 -0.6571 -4.4423 43 1 1.0765 -2.5577 0.7371 44 1 1.8994 -3.7232 2.7430 45 1 3.0872 0.9961 1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989701865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:49 Heat of formation + Delta-G solvation = -78.728656 kcal Electronic energy + Delta-G solvation = -30750.714945 eV Core-core repulsion = 26404.729624 eV Total energy + Delta-G solvation = -4345.985321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.55482 -49.63952 -41.63627 -39.93892 -38.40860 -36.17031 -35.02903 -33.86570 -32.66262 -31.93795 -30.29934 -29.13913 -27.10522 -25.89193 -25.32376 -24.32271 -23.84304 -22.23167 -21.42598 -19.95577 -19.01251 -18.73827 -18.35906 -18.03475 -17.53483 -17.39009 -17.22398 -16.64235 -16.22970 -16.06962 -15.76950 -15.56797 -15.55296 -15.12067 -14.98138 -14.95344 -14.79959 -14.16851 -14.04310 -13.85190 -13.62582 -13.47973 -13.17883 -12.99656 -12.92746 -12.86908 -12.62699 -12.47621 -12.24217 -12.20437 -12.10065 -12.03556 -11.69413 -11.52871 -11.38948 -10.59062 -10.48020 -10.07216 -9.67626 -9.44476 -8.69233 -7.86367 -5.25038 -0.16623 -0.01346 1.35777 1.40920 1.46904 1.76656 2.13835 2.44578 2.49014 2.74467 3.22369 3.28694 3.38803 3.50046 3.70633 3.74526 4.00929 4.05652 4.09113 4.20337 4.27508 4.36599 4.39582 4.59591 4.60962 4.70662 4.75751 4.82474 4.86797 4.88577 4.93237 4.94030 5.00295 5.03103 5.08121 5.29935 5.32019 5.37772 5.42855 5.58887 5.61997 5.70171 5.76410 5.93547 6.38292 6.62625 7.16795 7.37845 7.96982 8.35643 9.18480 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004467 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.754300 B = 6266.287336 C = 7690.860327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 H 0.118 0.882 4 C 0.510 3.490 5 O -0.584 6.584 6 N -0.583 5.583 7 C 0.104 3.896 8 C -0.160 4.160 9 C 0.151 3.849 10 N -0.604 5.604 11 C -0.246 4.246 12 H 0.067 0.933 13 C -0.053 4.053 14 N -0.935 5.935 15 Si 0.945 3.055 16 H -0.265 1.265 17 H -0.305 1.305 18 H -0.290 1.290 19 C 0.177 3.823 20 C 0.107 3.893 21 C -0.050 4.050 22 C -0.064 4.064 23 C -0.123 4.123 24 C 0.048 3.952 25 F -0.139 7.139 26 C 0.045 3.955 27 F -0.140 7.140 28 C -0.121 4.121 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.244 0.756 39 H 0.030 0.970 40 H 0.008 0.992 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.317 2.763 9.993 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 H 0.136 0.864 4 C 0.299 3.701 5 O -0.464 6.464 6 N -0.313 5.313 7 C -0.016 4.016 8 C -0.201 4.201 9 C 0.025 3.975 10 N -0.327 5.327 11 C -0.377 4.377 12 H 0.085 0.915 13 C -0.247 4.247 14 N -0.583 5.583 15 Si 0.775 3.225 16 H -0.189 1.189 17 H -0.233 1.233 18 H -0.217 1.217 19 C 0.051 3.949 20 C -0.019 4.019 21 C -0.051 4.051 22 C -0.082 4.082 23 C -0.142 4.142 24 C 0.028 3.972 25 F -0.118 7.118 26 C 0.025 3.975 27 F -0.119 7.119 28 C -0.139 4.139 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.026 0.974 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.186 0.814 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.873 2.149 10.049 21.489 hybrid contribution 2.334 -0.261 0.605 2.425 sum -16.539 1.887 10.654 19.764 Atomic orbital electron populations 1.22057 0.88483 1.04134 1.05258 1.20324 1.00245 1.00139 0.87833 0.86450 1.20923 0.78667 0.85034 0.85468 1.90692 1.42376 1.26566 1.86772 1.47464 1.57979 1.21179 1.04690 1.21516 0.94551 0.80347 1.05200 1.21816 0.98785 0.99730 0.99751 1.20540 0.90563 0.91408 0.95036 1.43933 1.11623 1.01281 1.75850 1.19466 0.86623 1.01983 1.29606 0.91520 1.25495 0.99941 0.99523 0.99773 1.70188 1.30053 1.20894 1.37159 0.85519 0.80908 0.77123 0.78918 1.18915 1.23293 1.21714 1.21536 0.93015 0.84040 0.96349 1.21590 0.96388 0.96106 0.87843 1.19470 0.96450 0.94580 0.94608 1.21079 0.98337 0.93465 0.95312 1.21295 0.97473 1.02078 0.93308 1.17915 1.01910 0.90133 0.87224 1.91485 1.87811 1.81524 1.50978 1.17805 0.97966 0.90294 0.91448 1.91487 1.72720 1.80770 1.66944 1.21137 0.98241 1.02279 0.92292 0.91580 0.88920 0.88739 0.88442 0.86311 0.94132 0.88390 0.94688 0.92936 0.94703 0.95130 0.97405 0.92216 0.89336 0.83387 0.81383 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.59 71.98 0.62 -1.18 16 2 C -0.06 -1.40 2.06 -12.29 -0.03 -1.43 16 3 H 0.12 2.32 7.39 -2.39 -0.02 2.30 16 4 C 0.51 16.34 6.87 87.66 0.60 16.94 16 5 O -0.58 -24.43 14.49 -3.06 -0.04 -24.48 16 6 N -0.58 -17.41 2.45 -830.40 -2.03 -19.44 16 7 C 0.10 2.09 4.96 84.36 0.42 2.51 16 8 C -0.16 -4.12 5.65 29.17 0.16 -3.96 16 9 C 0.15 5.35 5.63 87.21 0.49 5.84 16 10 N -0.60 -28.61 2.55 -698.09 -1.78 -30.39 16 11 C -0.25 -13.40 9.30 84.03 0.78 -12.62 16 12 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 13 C -0.05 -3.05 4.91 84.86 0.42 -2.63 16 14 N -0.94 -57.39 10.83 21.65 0.23 -57.15 16 15 Si 0.95 47.60 29.59 68.60 2.03 49.63 16 16 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 18 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 19 C 0.18 8.53 5.20 86.56 0.45 8.98 16 20 C 0.11 3.78 5.22 87.55 0.46 4.23 16 21 C -0.05 -1.24 4.46 -19.87 -0.09 -1.33 16 22 C -0.06 -1.51 7.85 22.27 0.17 -1.34 16 23 C -0.12 -2.85 10.02 22.31 0.22 -2.62 16 24 C 0.05 1.31 7.31 22.41 0.16 1.48 16 25 F -0.14 -3.96 17.18 44.97 0.77 -3.19 16 26 C 0.04 1.27 7.31 22.41 0.16 1.43 16 27 F -0.14 -4.23 17.18 44.97 0.77 -3.46 16 28 C -0.12 -3.09 9.65 22.30 0.22 -2.87 16 29 H 0.07 0.86 7.36 -2.39 -0.02 0.84 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.88 5.33 -2.39 -0.01 0.87 16 32 H 0.10 1.47 8.05 -2.39 -0.02 1.45 16 33 H 0.12 1.57 3.98 -2.38 -0.01 1.56 16 34 H 0.04 1.29 7.91 -2.39 -0.02 1.27 16 35 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.03 1.29 8.02 -2.39 -0.02 1.28 16 37 H 0.05 1.66 7.59 -2.39 -0.02 1.64 16 38 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.03 1.79 6.32 -2.39 -0.02 1.78 16 40 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 41 H 0.06 2.23 7.43 -2.38 -0.02 2.22 16 42 H 0.09 2.54 7.73 -2.39 -0.02 2.53 16 43 H 0.15 3.19 7.37 -2.91 -0.02 3.17 16 44 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 45 H 0.16 3.47 7.94 -2.91 -0.02 3.45 16 Total: -1.00 -76.37 361.56 6.20 -70.17 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.02 Total: 6.87 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.23 Total: 11.44 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.58 Total: -106.99 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.04 Total: -24.48 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 1.55 Total: -6.65 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -76.37 6.20 -70.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989701865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.557 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds