Wall clock time and date at job start Tue Mar 31 2020 21:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 C 1.50702 * 109.47107 * 240.00773 * 2 1 3 5 5 O 1.21284 * 119.99591 * 252.13674 * 4 2 1 6 6 N 1.34767 * 120.00257 * 72.12891 * 4 2 1 7 7 C 1.48219 * 119.96961 * 354.89060 * 6 4 2 8 8 C 1.47141 * 110.20182 * 102.58391 * 7 6 4 9 9 C 1.53391 * 112.04823 * 58.39153 * 8 7 6 10 10 N 1.43468 * 107.85946 * 281.54204 * 9 8 7 11 11 C 1.36939 * 118.93545 * 273.58355 * 10 9 8 12 12 H 1.08004 * 120.00084 * 27.62364 * 11 10 9 13 13 C 1.38814 * 119.99551 * 207.61102 * 11 10 9 14 14 N 1.31616 * 120.00175 * 11.20567 * 13 11 10 15 15 Si 1.86802 * 119.99737 * 191.20055 * 13 11 10 16 16 H 1.48504 * 109.47059 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47126 * 120.00258 * 15 13 11 18 18 H 1.48496 * 109.47090 * 240.00465 * 15 13 11 19 19 C 1.48853 * 122.12025 * 93.60634 * 10 9 8 20 20 C 1.43624 * 119.97003 * 174.86765 * 6 4 2 21 21 C 1.50694 * 109.47363 * 120.00286 * 2 1 3 22 22 C 1.38232 * 119.98601 * 59.72601 * 21 2 1 23 23 C 1.38190 * 120.05054 * 179.76945 * 22 21 2 24 24 C 1.38500 * 120.02061 * 0.50638 * 23 22 21 25 25 F 1.35099 * 120.00795 * 179.76845 * 24 23 22 26 26 C 1.38394 * 119.97853 * 359.74487 * 24 23 22 27 27 C 1.38443 * 119.94526 * 0.02562 * 26 24 23 28 28 F 1.35106 * 120.00547 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.47269 * 67.56088 * 1 2 3 30 30 H 1.09004 * 109.47397 * 187.56152 * 1 2 3 31 31 H 1.09005 * 109.47178 * 307.55984 * 1 2 3 32 32 H 1.09001 * 109.32505 * 222.76041 * 7 6 4 33 33 H 1.08993 * 109.32281 * 342.39762 * 7 6 4 34 34 H 1.08993 * 109.00433 * 178.81779 * 8 7 6 35 35 H 1.08996 * 108.99963 * 297.59959 * 8 7 6 36 36 H 1.09003 * 109.83048 * 161.94453 * 9 8 7 37 37 H 1.08996 * 109.83438 * 41.13728 * 9 8 7 38 38 H 0.97001 * 119.99503 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.48016 * 200.63581 * 19 10 9 40 40 H 1.09006 * 109.48706 * 80.61179 * 19 10 9 41 41 H 1.08992 * 108.87386 * 31.43916 * 20 6 4 42 42 H 1.09004 * 108.87429 * 149.88343 * 20 6 4 43 43 H 1.07994 * 119.97289 * 0.02562 * 22 21 2 44 44 H 1.08001 * 119.98816 * 180.25101 * 23 22 21 45 45 H 1.07993 * 120.02813 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5382 -1.8082 -1.1329 6 7 1.9192 -0.1255 -2.4395 7 6 1.2003 1.1637 -2.5741 8 6 2.1614 2.2705 -2.7021 9 6 3.0922 2.0883 -3.9076 10 7 4.1021 1.1363 -3.5439 11 6 5.2308 1.5786 -2.9070 12 1 5.1936 2.4706 -2.2992 13 6 6.4228 0.8802 -3.0424 14 7 6.5298 -0.0698 -3.9470 15 14 7.8751 1.2889 -1.9409 16 1 7.4998 2.3870 -1.0142 17 1 8.2544 0.0870 -1.1556 18 1 9.0252 1.7174 -2.7768 19 6 3.9626 -0.3164 -3.8369 20 6 2.4959 -0.7518 -3.5962 21 6 2.0323 -0.7104 1.2304 22 6 1.6936 -2.0322 1.4516 23 6 2.1574 -2.6864 2.5770 24 6 2.9538 -2.0150 3.4899 25 9 3.4033 -2.6535 4.5924 26 6 3.2893 -0.6902 3.2720 27 6 2.8279 -0.0373 2.1418 28 9 3.1551 1.2559 1.9276 29 1 -0.3634 0.3923 -0.9498 30 1 -0.3634 -1.0187 0.1352 31 1 -0.3634 0.6265 0.8147 32 1 0.5663 1.1323 -3.4602 33 1 0.5801 1.3245 -1.6924 34 1 1.6130 3.2048 -2.8208 35 1 2.7619 2.3258 -1.7941 36 1 3.5578 3.0403 -4.1625 37 1 2.5245 1.7157 -4.7602 38 1 7.3629 -0.5575 -4.0418 39 1 4.6227 -0.8844 -3.1814 40 1 4.2320 -0.5052 -4.8761 41 1 2.4665 -1.8332 -3.4631 42 1 1.9021 -0.4899 -4.4719 43 1 1.0693 -2.5552 0.7424 44 1 1.8955 -3.7203 2.7469 45 1 3.9105 -0.1661 3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989704024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:58 Heat of formation + Delta-G solvation = -62.467465 kcal Electronic energy + Delta-G solvation = -31130.388437 eV Core-core repulsion = 26785.108255 eV Total energy + Delta-G solvation = -4345.280183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.04375 -48.95329 -40.32869 -38.70593 -36.93835 -34.61795 -33.92781 -32.28823 -30.95134 -30.78105 -29.23593 -27.60670 -25.53113 -24.79019 -23.69241 -23.16633 -22.52225 -21.02110 -19.74230 -18.60083 -18.25664 -17.47879 -16.78150 -16.37915 -16.21057 -15.93609 -15.67687 -15.27453 -15.23276 -15.05604 -14.49991 -14.34765 -14.06601 -13.87325 -13.81488 -13.47189 -13.41915 -12.81573 -12.75596 -12.52909 -12.31228 -12.08262 -12.04584 -11.72681 -11.60151 -11.27947 -11.24269 -11.11629 -10.90185 -10.71629 -10.52286 -10.30250 -10.13723 -9.77781 -9.68495 -9.27926 -9.03896 -8.61144 -8.44083 -8.02006 -6.62782 -5.74036 -3.19880 0.90982 1.02852 3.02708 3.29375 3.39966 3.48161 3.49037 3.58041 3.85466 4.35046 4.45003 4.51287 4.54090 4.72303 4.84422 5.04662 5.10994 5.16621 5.22837 5.40757 5.46807 5.52442 5.64011 5.67467 5.76026 5.80601 5.83156 5.85640 5.90301 5.97730 6.06670 6.18108 6.20034 6.27152 6.40091 6.42032 6.46061 6.73638 6.78174 6.97825 7.01320 7.47165 7.66840 7.83316 7.92324 8.50723 8.66500 9.26002 9.93144 10.39054 11.33629 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.004899 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.868448 B = 5713.610516 C = 7036.102319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 H 0.108 0.892 4 C 0.525 3.475 5 O -0.539 6.539 6 N -0.580 5.580 7 C 0.110 3.890 8 C -0.175 4.175 9 C 0.163 3.837 10 N -0.591 5.591 11 C -0.255 4.255 12 H 0.063 0.937 13 C 0.008 3.992 14 N -0.906 5.906 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.169 3.831 20 C 0.089 3.911 21 C -0.106 4.106 22 C -0.024 4.024 23 C -0.167 4.167 24 C 0.125 3.875 25 F -0.135 7.135 26 C -0.196 4.196 27 C 0.140 3.860 28 F -0.126 7.126 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.253 0.747 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.705 -0.612 9.297 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 H 0.126 0.874 4 C 0.312 3.688 5 O -0.417 6.417 6 N -0.311 5.311 7 C -0.012 4.012 8 C -0.216 4.216 9 C 0.035 3.965 10 N -0.313 5.313 11 C -0.385 4.385 12 H 0.081 0.919 13 C -0.191 4.191 14 N -0.551 5.551 15 Si 0.728 3.272 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.217 1.217 19 C 0.043 3.957 20 C -0.036 4.036 21 C -0.108 4.108 22 C -0.042 4.042 23 C -0.186 4.186 24 C 0.106 3.894 25 F -0.114 7.114 26 C -0.216 4.216 27 C 0.120 3.880 28 F -0.105 7.105 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.263 -1.281 9.291 17.914 hybrid contribution 1.283 0.466 0.709 1.538 sum -13.980 -0.815 10.000 17.208 Atomic orbital electron populations 1.22002 0.91882 1.03184 1.03240 1.20193 0.97640 1.01016 0.90671 0.87356 1.20015 0.78881 0.85814 0.84118 1.90672 1.44819 1.20533 1.85637 1.47281 1.54159 1.22273 1.07395 1.21042 0.94370 0.83769 1.01969 1.21884 0.99204 0.96497 1.04037 1.20176 0.90166 0.93713 0.92493 1.43671 1.18311 1.01314 1.67960 1.19150 0.86602 1.10354 1.22361 0.91939 1.25039 0.97297 0.99188 0.97569 1.69987 1.25720 1.25674 1.33674 0.86294 0.82888 0.77804 0.80261 1.20285 1.21598 1.21661 1.21850 0.89883 0.84324 0.99638 1.22025 0.97853 0.97714 0.86026 1.19470 1.00208 0.95367 0.95713 1.20691 0.96607 0.92226 0.94664 1.21150 1.00864 1.01393 0.95179 1.17280 0.97141 0.90266 0.84721 1.91509 1.87481 1.81580 1.50828 1.20920 1.06049 0.94715 0.99921 1.17115 0.96957 0.79326 0.94607 1.91538 1.90728 1.33649 1.94539 0.90575 0.91657 0.91298 0.91557 0.90183 0.92529 0.91408 0.93627 0.94890 0.93722 0.90524 0.94286 0.91036 0.92641 0.83942 0.84147 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.63 37.16 0.32 -1.13 16 2 C -0.07 -1.04 2.05 -92.93 -0.19 -1.23 16 3 H 0.11 1.60 6.60 -51.93 -0.34 1.26 16 4 C 0.52 9.36 6.87 -10.99 -0.08 9.29 16 5 O -0.54 -11.38 14.26 5.55 0.08 -11.30 16 6 N -0.58 -9.95 2.45 -176.65 -0.43 -10.38 16 7 C 0.11 1.51 5.00 -5.91 -0.03 1.48 16 8 C -0.17 -2.78 5.60 -29.34 -0.16 -2.94 16 9 C 0.16 3.19 5.63 -5.44 -0.03 3.16 16 10 N -0.59 -14.33 2.53 -172.25 -0.44 -14.76 16 11 C -0.25 -6.99 9.25 -15.06 -0.14 -7.12 16 12 H 0.06 1.71 7.85 -52.48 -0.41 1.30 16 13 C 0.01 0.21 5.01 -17.43 -0.09 0.13 16 14 N -0.91 -26.72 10.87 55.49 0.60 -26.12 16 15 Si 0.90 22.65 29.57 -169.99 -5.03 17.62 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 C 0.17 4.04 5.16 -1.75 -0.01 4.03 16 20 C 0.09 1.68 5.30 -4.58 -0.02 1.65 16 21 C -0.11 -1.54 4.52 -104.55 -0.47 -2.02 16 22 C -0.02 -0.31 7.75 -39.60 -0.31 -0.62 16 23 C -0.17 -2.03 10.03 -39.50 -0.40 -2.43 16 24 C 0.13 1.63 7.30 -39.43 -0.29 1.34 16 25 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 26 C -0.20 -2.64 10.01 -39.45 -0.39 -3.04 16 27 C 0.14 2.08 7.24 -39.43 -0.29 1.80 16 28 F -0.13 -2.01 16.19 2.25 0.04 -1.97 16 29 H 0.08 0.68 5.47 -51.93 -0.28 0.40 16 30 H 0.06 0.61 7.13 -51.93 -0.37 0.24 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.78 8.06 -51.93 -0.42 0.37 16 33 H 0.08 0.89 4.00 -51.93 -0.21 0.68 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.26 7.82 -51.93 -0.41 0.86 16 36 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 37 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.08 2.17 6.60 -51.93 -0.34 1.83 16 40 H 0.04 0.99 7.97 -51.93 -0.41 0.58 16 41 H 0.07 1.38 7.30 -51.93 -0.38 1.00 16 42 H 0.06 0.92 7.73 -51.93 -0.40 0.51 16 43 H 0.14 1.73 7.18 -52.49 -0.38 1.35 16 44 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -32.27 359.84 -8.28 -40.55 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.99 Total: 0.30 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.57 Total: 2.34 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.27 Total: -51.26 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.27 -8.28 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989704024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.913 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds