Wall clock time and date at job start Tue Mar 31 2020 21:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 C 1.50702 * 109.47107 * 240.00773 * 2 1 3 5 5 O 1.21284 * 119.99591 * 252.13674 * 4 2 1 6 6 N 1.34767 * 120.00257 * 72.12891 * 4 2 1 7 7 C 1.48219 * 119.96961 * 354.89060 * 6 4 2 8 8 C 1.47141 * 110.20182 * 102.58391 * 7 6 4 9 9 C 1.53391 * 112.04823 * 58.39153 * 8 7 6 10 10 N 1.43468 * 107.85946 * 281.54204 * 9 8 7 11 11 C 1.36939 * 118.93545 * 273.58355 * 10 9 8 12 12 H 1.08004 * 120.00084 * 27.62364 * 11 10 9 13 13 C 1.38814 * 119.99551 * 207.61102 * 11 10 9 14 14 N 1.31616 * 120.00175 * 11.20567 * 13 11 10 15 15 Si 1.86802 * 119.99737 * 191.20055 * 13 11 10 16 16 H 1.48504 * 109.47059 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47126 * 120.00258 * 15 13 11 18 18 H 1.48496 * 109.47090 * 240.00465 * 15 13 11 19 19 C 1.48853 * 122.12025 * 93.60634 * 10 9 8 20 20 C 1.43624 * 119.97003 * 174.86765 * 6 4 2 21 21 C 1.50694 * 109.47363 * 120.00286 * 2 1 3 22 22 C 1.38232 * 119.98601 * 59.72601 * 21 2 1 23 23 C 1.38190 * 120.05054 * 179.76945 * 22 21 2 24 24 C 1.38500 * 120.02061 * 0.50638 * 23 22 21 25 25 F 1.35099 * 120.00795 * 179.76845 * 24 23 22 26 26 C 1.38394 * 119.97853 * 359.74487 * 24 23 22 27 27 C 1.38443 * 119.94526 * 0.02562 * 26 24 23 28 28 F 1.35106 * 120.00547 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.47269 * 67.56088 * 1 2 3 30 30 H 1.09004 * 109.47397 * 187.56152 * 1 2 3 31 31 H 1.09005 * 109.47178 * 307.55984 * 1 2 3 32 32 H 1.09001 * 109.32505 * 222.76041 * 7 6 4 33 33 H 1.08993 * 109.32281 * 342.39762 * 7 6 4 34 34 H 1.08993 * 109.00433 * 178.81779 * 8 7 6 35 35 H 1.08996 * 108.99963 * 297.59959 * 8 7 6 36 36 H 1.09003 * 109.83048 * 161.94453 * 9 8 7 37 37 H 1.08996 * 109.83438 * 41.13728 * 9 8 7 38 38 H 0.97001 * 119.99503 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.48016 * 200.63581 * 19 10 9 40 40 H 1.09006 * 109.48706 * 80.61179 * 19 10 9 41 41 H 1.08992 * 108.87386 * 31.43916 * 20 6 4 42 42 H 1.09004 * 108.87429 * 149.88343 * 20 6 4 43 43 H 1.07994 * 119.97289 * 0.02562 * 22 21 2 44 44 H 1.08001 * 119.98816 * 180.25101 * 23 22 21 45 45 H 1.07993 * 120.02813 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5382 -1.8082 -1.1329 6 7 1.9192 -0.1255 -2.4395 7 6 1.2003 1.1637 -2.5741 8 6 2.1614 2.2705 -2.7021 9 6 3.0922 2.0883 -3.9076 10 7 4.1021 1.1363 -3.5439 11 6 5.2308 1.5786 -2.9070 12 1 5.1936 2.4706 -2.2992 13 6 6.4228 0.8802 -3.0424 14 7 6.5298 -0.0698 -3.9470 15 14 7.8751 1.2889 -1.9409 16 1 7.4998 2.3870 -1.0142 17 1 8.2544 0.0870 -1.1556 18 1 9.0252 1.7174 -2.7768 19 6 3.9626 -0.3164 -3.8369 20 6 2.4959 -0.7518 -3.5962 21 6 2.0323 -0.7104 1.2304 22 6 1.6936 -2.0322 1.4516 23 6 2.1574 -2.6864 2.5770 24 6 2.9538 -2.0150 3.4899 25 9 3.4033 -2.6535 4.5924 26 6 3.2893 -0.6902 3.2720 27 6 2.8279 -0.0373 2.1418 28 9 3.1551 1.2559 1.9276 29 1 -0.3634 0.3923 -0.9498 30 1 -0.3634 -1.0187 0.1352 31 1 -0.3634 0.6265 0.8147 32 1 0.5663 1.1323 -3.4602 33 1 0.5801 1.3245 -1.6924 34 1 1.6130 3.2048 -2.8208 35 1 2.7619 2.3258 -1.7941 36 1 3.5578 3.0403 -4.1625 37 1 2.5245 1.7157 -4.7602 38 1 7.3629 -0.5575 -4.0418 39 1 4.6227 -0.8844 -3.1814 40 1 4.2320 -0.5052 -4.8761 41 1 2.4665 -1.8332 -3.4631 42 1 1.9021 -0.4899 -4.4719 43 1 1.0693 -2.5552 0.7424 44 1 1.8955 -3.7203 2.7469 45 1 3.9105 -0.1661 3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989704024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:57 Heat of formation + Delta-G solvation = -80.345256 kcal Electronic energy + Delta-G solvation = -31131.163677 eV Core-core repulsion = 26785.108255 eV Total energy + Delta-G solvation = -4346.055422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.11726 -50.05860 -41.61051 -39.86333 -38.47032 -36.17807 -35.17774 -33.89933 -32.72823 -31.84669 -30.34007 -29.18519 -27.14499 -25.97004 -25.37056 -24.27441 -23.79048 -22.22819 -21.46263 -19.92122 -19.33308 -18.77461 -18.46035 -17.65571 -17.54795 -17.03519 -16.99394 -16.64614 -16.38352 -16.33604 -16.05247 -15.59273 -15.54756 -15.20884 -15.13353 -14.92986 -14.82961 -14.11651 -13.98911 -13.76446 -13.62564 -13.48273 -13.24606 -13.01266 -12.91049 -12.88737 -12.78032 -12.41468 -12.32942 -12.22418 -12.15904 -12.07328 -11.71263 -11.56193 -11.40360 -10.63002 -10.55436 -10.08053 -9.69215 -9.46688 -8.63563 -7.87580 -5.34289 -0.14420 -0.00849 1.34729 1.38530 1.46142 1.68697 2.13824 2.40765 2.46453 2.80736 3.27574 3.28129 3.41906 3.45971 3.65830 3.72997 3.87579 4.02199 4.09903 4.16382 4.26154 4.33770 4.36726 4.55706 4.56893 4.71158 4.77799 4.81862 4.86299 4.86460 4.88222 4.90891 4.97415 5.01566 5.03284 5.21686 5.26799 5.32809 5.34990 5.55673 5.60010 5.69925 5.71831 5.89311 6.39155 6.56122 7.15962 7.30375 7.94123 8.34491 9.16659 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.004899 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.868448 B = 5713.610516 C = 7036.102319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 H 0.101 0.899 4 C 0.515 3.485 5 O -0.581 6.581 6 N -0.584 5.584 7 C 0.105 3.895 8 C -0.161 4.161 9 C 0.153 3.847 10 N -0.604 5.604 11 C -0.250 4.250 12 H 0.060 0.940 13 C -0.049 4.049 14 N -0.935 5.935 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.301 1.301 18 H -0.286 1.286 19 C 0.180 3.820 20 C 0.104 3.896 21 C -0.119 4.119 22 C -0.028 4.028 23 C -0.159 4.159 24 C 0.119 3.881 25 F -0.135 7.135 26 C -0.199 4.199 27 C 0.115 3.885 28 F -0.138 7.138 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.245 0.755 39 H 0.022 0.978 40 H 0.014 0.986 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.153 0.847 44 H 0.167 0.833 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 0.289 10.000 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 H 0.119 0.881 4 C 0.304 3.696 5 O -0.461 6.461 6 N -0.314 5.314 7 C -0.015 4.015 8 C -0.201 4.201 9 C 0.027 3.973 10 N -0.327 5.327 11 C -0.381 4.381 12 H 0.078 0.922 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.779 3.221 16 H -0.192 1.192 17 H -0.228 1.228 18 H -0.213 1.213 19 C 0.054 3.946 20 C -0.022 4.022 21 C -0.121 4.121 22 C -0.046 4.046 23 C -0.177 4.177 24 C 0.099 3.901 25 F -0.113 7.113 26 C -0.219 4.219 27 C 0.096 3.904 28 F -0.116 7.116 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.032 0.968 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.171 0.829 44 H 0.185 0.815 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.301 -0.317 9.998 20.856 hybrid contribution 2.194 0.208 0.484 2.256 sum -16.107 -0.109 10.482 19.217 Atomic orbital electron populations 1.22031 0.88257 1.04417 1.04936 1.20198 1.00507 0.99628 0.88473 0.88104 1.20764 0.78062 0.85529 0.85253 1.90645 1.46537 1.22568 1.86370 1.47458 1.53825 1.23435 1.06645 1.21386 0.93983 0.80928 1.05238 1.21665 0.98732 0.99561 1.00190 1.20458 0.89821 0.92108 0.94944 1.43874 1.18605 1.02138 1.68084 1.19403 0.87622 1.09609 1.21496 0.92192 1.25686 0.99689 0.99907 0.99172 1.70143 1.25741 1.26952 1.35411 0.85462 0.80574 0.77224 0.78881 1.19178 1.22844 1.21260 1.21494 0.92445 0.83940 0.96698 1.21646 0.94890 0.97348 0.88297 1.19687 1.00407 0.96105 0.95854 1.20857 0.96827 0.91805 0.95105 1.21454 0.99568 1.02481 0.94244 1.17375 0.97452 0.90221 0.85012 1.91512 1.87513 1.81486 1.50792 1.21093 1.05882 0.95099 0.99785 1.17341 0.98149 0.79248 0.95687 1.91501 1.91013 1.34394 1.94716 0.88987 0.90879 0.89237 0.88184 0.86875 0.88456 0.94559 0.94617 0.92812 0.94517 0.95902 0.96840 0.91894 0.89219 0.82940 0.81517 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.63 71.98 0.62 -1.63 16 2 C -0.07 -1.77 2.05 -12.29 -0.03 -1.80 16 3 H 0.10 2.83 6.60 -2.39 -0.02 2.81 16 4 C 0.52 17.86 6.87 87.66 0.60 18.46 16 5 O -0.58 -24.69 14.26 -3.04 -0.04 -24.74 16 6 N -0.58 -18.86 2.45 -831.19 -2.04 -20.90 16 7 C 0.10 2.42 5.00 84.23 0.42 2.84 16 8 C -0.16 -4.59 5.60 28.90 0.16 -4.43 16 9 C 0.15 5.71 5.63 87.07 0.49 6.20 16 10 N -0.60 -29.54 2.53 -698.86 -1.77 -31.31 16 11 C -0.25 -14.00 9.25 84.03 0.78 -13.23 16 12 H 0.06 3.33 7.85 -2.91 -0.02 3.30 16 13 C -0.05 -2.90 5.01 84.86 0.43 -2.47 16 14 N -0.94 -57.67 10.87 21.65 0.24 -57.44 16 15 Si 0.95 47.93 29.57 68.60 2.03 49.95 16 16 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.30 -15.62 7.11 99.48 0.71 -14.92 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 C 0.18 8.89 5.16 86.57 0.45 9.34 16 20 C 0.10 3.84 5.30 87.55 0.46 4.30 16 21 C -0.12 -3.35 4.52 -19.82 -0.09 -3.44 16 22 C -0.03 -0.70 7.75 22.26 0.17 -0.52 16 23 C -0.16 -3.60 10.03 22.32 0.22 -3.37 16 24 C 0.12 2.95 7.30 22.37 0.16 3.12 16 25 F -0.13 -3.29 17.27 44.97 0.78 -2.51 16 26 C -0.20 -5.25 10.01 22.36 0.22 -5.03 16 27 C 0.12 3.40 7.24 22.37 0.16 3.56 16 28 F -0.14 -4.39 16.19 44.97 0.73 -3.66 16 29 H 0.09 1.18 5.47 -2.39 -0.01 1.17 16 30 H 0.07 1.10 7.13 -2.38 -0.02 1.08 16 31 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.10 1.75 8.06 -2.39 -0.02 1.73 16 33 H 0.11 1.93 4.00 -2.39 -0.01 1.92 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.28 7.82 -2.39 -0.02 1.26 16 36 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 37 H 0.05 1.78 7.59 -2.39 -0.02 1.76 16 38 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.02 1.35 6.60 -2.39 -0.02 1.33 16 40 H 0.01 0.72 7.97 -2.38 -0.02 0.70 16 41 H 0.06 2.44 7.30 -2.39 -0.02 2.42 16 42 H 0.09 2.71 7.73 -2.39 -0.02 2.69 16 43 H 0.15 3.45 7.18 -2.91 -0.02 3.42 16 44 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 45 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -74.82 359.84 6.18 -68.65 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.02 Total: 10.06 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.24 Total: 11.89 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -3.57 Total: -109.65 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.74 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.50 Total: -6.17 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.95 kcal Total: -74.82 6.18 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989704024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.699 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds