Wall clock time and date at job start Tue Mar 31 2020 20:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.70207 * 2 1 4 4 C 1.53186 * 109.59198 * 120.35704 * 2 1 3 5 5 H 1.09004 * 109.49568 * 54.43428 * 4 2 1 6 6 N 1.46499 * 109.49738 * 294.37867 * 4 2 1 7 7 C 1.34777 * 120.00315 * 155.06318 * 6 4 2 8 8 O 1.21283 * 119.99749 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00427 * 179.97438 * 7 6 4 10 10 C 1.50699 * 109.47223 * 179.97438 * 9 7 6 11 11 C 1.38232 * 119.98512 * 100.00019 * 10 9 7 12 12 C 1.38181 * 120.04806 * 180.02562 * 11 10 9 13 13 C 1.38493 * 120.02926 * 359.95580 * 12 11 10 14 14 F 1.35099 * 120.01597 * 180.02562 * 13 12 11 15 15 C 1.38406 * 119.97167 * 0.02725 * 13 12 11 16 16 C 1.38440 * 119.94906 * 359.74157 * 15 13 12 17 17 F 1.35095 * 120.01116 * 180.25559 * 16 15 13 18 18 C 1.53033 * 109.34316 * 174.40576 * 4 2 1 19 19 C 1.53044 * 109.53872 * 298.65168 * 18 4 2 20 20 C 1.53198 * 109.31057 * 61.36662 * 19 18 4 21 21 N 1.46929 * 108.77434 * 305.36423 * 20 19 18 22 22 C 1.36934 * 120.63076 * 233.61235 * 21 20 19 23 23 H 1.08001 * 119.99793 * 150.17318 * 22 21 20 24 24 C 1.38812 * 120.00048 * 330.17557 * 22 21 20 25 25 N 1.31621 * 119.99601 * 344.48779 * 24 22 21 26 26 Si 1.86798 * 120.00211 * 164.48526 * 24 22 21 27 27 H 1.48506 * 109.46835 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47029 * 119.99886 * 26 24 22 29 29 H 1.48503 * 109.47440 * 240.00277 * 26 24 22 30 30 H 1.08998 * 109.47275 * 299.63927 * 1 2 3 31 31 H 1.09004 * 109.47674 * 59.64247 * 1 2 3 32 32 H 1.09005 * 109.47444 * 179.64409 * 1 2 3 33 33 H 0.97001 * 119.99707 * 335.05696 * 6 4 2 34 34 H 1.09003 * 109.46977 * 300.00273 * 9 7 6 35 35 H 1.09001 * 109.46801 * 59.99636 * 9 7 6 36 36 H 1.08000 * 119.97494 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.99078 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.02091 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.45809 * 58.67445 * 18 4 2 40 40 H 1.09000 * 109.46552 * 178.63468 * 18 4 2 41 41 H 1.09003 * 109.49905 * 181.31232 * 19 18 4 42 42 H 1.08999 * 109.49579 * 301.41493 * 19 18 4 43 43 H 1.08995 * 109.58514 * 65.15081 * 20 19 18 44 44 H 1.09003 * 109.58396 * 185.43787 * 20 19 18 45 45 H 0.97005 * 119.99353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 1 1.6025 -1.7251 1.2915 6 7 1.6705 0.0266 2.4434 7 6 1.5485 -0.6048 3.6279 8 8 1.7472 -1.7989 3.7018 9 6 1.1653 0.1730 4.8605 10 6 1.0971 -0.7599 6.0421 11 6 2.1524 -0.8252 6.9326 12 6 2.0914 -1.6805 8.0161 13 6 0.9724 -2.4727 8.2117 14 9 0.9128 -3.3085 9.2715 15 6 -0.0849 -2.4079 7.3209 16 6 -0.0248 -1.5471 6.2383 17 9 -1.0583 -1.4790 5.3710 18 6 3.5674 -0.8486 1.1704 19 6 3.9568 -1.6663 -0.0633 20 6 3.4656 -0.9471 -1.3235 21 7 2.0232 -0.6990 -1.1946 22 6 1.1544 -1.1120 -2.1692 23 1 0.1402 -1.3786 -1.9108 24 6 1.5772 -1.1880 -3.4891 25 7 2.6883 -0.5876 -3.8598 26 14 0.5695 -2.1425 -4.7392 27 1 -0.6265 -2.7194 -4.0742 28 1 0.1378 -1.2295 -5.8279 29 1 1.3956 -3.2369 -5.3094 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3634 -1.0277 -0.0064 33 1 1.5114 0.9817 2.3843 34 1 1.9111 0.9452 5.0493 35 1 0.1913 0.6380 4.7084 36 1 3.0251 -0.2073 6.7813 37 1 2.9166 -1.7311 8.7111 38 1 -0.9578 -3.0256 7.4724 39 1 4.0065 0.1465 1.0999 40 1 3.9374 -1.3458 2.0671 41 1 5.0411 -1.7706 -0.1032 42 1 3.4977 -2.6532 -0.0053 43 1 3.9914 0.0017 -1.4311 44 1 3.6546 -1.5707 -2.1973 45 1 2.9840 -0.6411 -4.7821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993366178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:45 Heat of formation + Delta-G solvation = -87.003148 kcal Electronic energy + Delta-G solvation = -29474.655817 eV Core-core repulsion = 25128.311687 eV Total energy + Delta-G solvation = -4346.344130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.27329 -49.17508 -40.06459 -38.93716 -37.56518 -34.31004 -33.05563 -32.50114 -31.64988 -31.09195 -29.41322 -27.56399 -26.04923 -24.98950 -23.51674 -22.81870 -21.76713 -20.70821 -20.19069 -19.35643 -18.46708 -17.53100 -17.08086 -16.54185 -16.25969 -16.08956 -15.90035 -15.47770 -15.33463 -15.03730 -14.78742 -14.62886 -14.15734 -13.92697 -13.77055 -13.63418 -13.38427 -13.08146 -12.87082 -12.57486 -12.23717 -12.20151 -12.02172 -11.67658 -11.64542 -11.55091 -11.11818 -10.93908 -10.76489 -10.56624 -10.31119 -10.15186 -10.03573 -9.93541 -9.65328 -9.40017 -9.31671 -8.86485 -8.68822 -8.46901 -6.68202 -5.81169 -3.25767 0.63973 0.73659 2.76945 2.96745 3.36103 3.43380 3.45412 3.49273 3.60657 4.11834 4.23174 4.27374 4.47999 4.53351 4.77643 4.90526 5.10175 5.18191 5.28375 5.38061 5.48606 5.50692 5.52074 5.59511 5.65468 5.72781 5.77595 5.89923 5.95187 6.07383 6.20096 6.32522 6.39637 6.46550 6.51617 6.61561 6.70738 6.73490 6.83687 6.97984 7.06190 7.37959 7.64674 7.72123 7.81067 8.38688 8.44913 9.18748 9.81289 10.37743 11.27571 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002481 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.381752 B =11284.944822 C =11694.453005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.131 3.869 5 H 0.085 0.915 6 N -0.718 5.718 7 C 0.512 3.488 8 O -0.535 6.535 9 C -0.104 4.104 10 C -0.106 4.106 11 C -0.051 4.051 12 C -0.163 4.163 13 C 0.126 3.874 14 F -0.134 7.134 15 C -0.192 4.192 16 C 0.149 3.851 17 F -0.126 7.126 18 C -0.116 4.116 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.252 4.252 23 H 0.071 0.929 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.289 1.289 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.087 0.913 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 3.622 22.815 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.103 0.897 6 N -0.368 5.368 7 C 0.297 3.703 8 O -0.412 6.412 9 C -0.144 4.144 10 C -0.107 4.107 11 C -0.069 4.069 12 C -0.182 4.182 13 C 0.107 3.893 14 F -0.112 7.112 15 C -0.212 4.212 16 C 0.130 3.870 17 F -0.104 7.104 18 C -0.154 4.154 19 C -0.180 4.180 20 C 0.045 3.955 21 N -0.305 5.305 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.105 0.895 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.125 2.726 22.663 22.854 hybrid contribution -0.666 -0.195 -0.713 0.996 sum -1.792 2.531 21.950 22.168 Atomic orbital electron populations 1.21815 0.95646 1.01738 1.00195 1.20559 0.93236 0.93525 0.86648 0.95512 1.21794 0.95044 0.96886 0.83757 0.89669 1.46116 1.70150 1.12185 1.08336 1.20291 0.77526 0.88139 0.84346 1.90729 1.49897 1.14934 1.85593 1.20635 1.05203 0.97720 0.90871 1.19426 0.93937 0.99655 0.97729 1.20750 0.97119 0.96986 0.92080 1.21142 0.98142 0.98344 1.00607 1.17287 0.95102 0.91382 0.85541 1.91526 1.96617 1.69260 1.53805 1.20992 1.01146 1.03006 0.96007 1.17078 0.85233 0.96522 0.88215 1.91543 1.56199 1.94924 1.67736 1.21750 0.95418 0.99977 0.98300 1.22187 0.99204 0.99735 0.96907 1.20818 0.83128 0.97154 0.94431 1.44039 1.03142 1.65131 1.18231 1.19205 0.95185 1.37737 0.85998 0.91184 1.25088 0.97895 0.99476 0.96979 1.70040 1.24085 1.43787 1.16689 0.86246 0.79672 0.79590 0.81412 1.20194 1.21741 1.21550 0.94290 0.91778 0.92682 0.77013 0.87262 0.87515 0.83895 0.83978 0.83447 0.92795 0.93258 0.93024 0.92540 0.96290 0.89498 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.84 37.15 0.29 -2.20 16 2 C 0.17 3.30 3.03 -67.60 -0.21 3.10 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.13 2.30 1.99 -67.82 -0.14 2.17 16 5 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 6 N -0.72 -9.71 4.57 -53.69 -0.25 -9.96 16 7 C 0.51 7.06 7.78 -10.99 -0.09 6.97 16 8 O -0.54 -9.75 15.62 5.55 0.09 -9.66 16 9 C -0.10 -0.96 5.56 -29.04 -0.16 -1.12 16 10 C -0.11 -1.09 4.43 -104.55 -0.46 -1.55 16 11 C -0.05 -0.43 9.66 -39.60 -0.38 -0.81 16 12 C -0.16 -1.37 10.02 -39.51 -0.40 -1.77 16 13 C 0.13 1.25 7.30 -39.43 -0.29 0.96 16 14 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 15 C -0.19 -2.00 10.01 -39.45 -0.39 -2.39 16 16 C 0.15 1.73 7.14 -39.43 -0.28 1.44 16 17 F -0.13 -1.62 16.65 2.25 0.04 -1.59 16 18 C -0.12 -2.03 5.46 -26.69 -0.15 -2.18 16 19 C -0.14 -2.74 6.08 -26.61 -0.16 -2.91 16 20 C 0.17 3.98 5.28 -3.71 -0.02 3.96 16 21 N -0.58 -14.03 2.99 -164.77 -0.49 -14.52 16 22 C -0.25 -6.66 8.58 -15.06 -0.13 -6.79 16 23 H 0.07 1.83 6.23 -52.49 -0.33 1.50 16 24 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 25 N -0.90 -25.62 11.23 55.49 0.62 -25.00 16 26 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.04 0.58 7.78 -51.93 -0.40 0.17 16 31 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 32 H 0.05 1.08 7.40 -51.93 -0.38 0.69 16 33 H 0.40 4.18 8.60 -40.82 -0.35 3.82 16 34 H 0.11 0.65 8.00 -51.93 -0.42 0.23 16 35 H 0.11 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.14 0.83 8.04 -52.49 -0.42 0.41 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 2.28 6.15 -51.93 -0.32 1.97 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -31.83 373.01 -8.75 -40.58 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.34 Total: 2.48 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.04 Total: -3.08 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.11 Total: -49.47 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.83 -8.75 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993366178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.425 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds