Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.70207 * 2 1 4 4 C 1.53186 * 109.59198 * 120.35704 * 2 1 3 5 5 H 1.09004 * 109.49568 * 54.43428 * 4 2 1 6 6 N 1.46499 * 109.49738 * 294.37867 * 4 2 1 7 7 C 1.34777 * 120.00315 * 155.06318 * 6 4 2 8 8 O 1.21283 * 119.99749 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00427 * 179.97438 * 7 6 4 10 10 C 1.50699 * 109.47223 * 179.97438 * 9 7 6 11 11 C 1.38232 * 119.98512 * 100.00019 * 10 9 7 12 12 C 1.38181 * 120.04806 * 180.02562 * 11 10 9 13 13 C 1.38493 * 120.02926 * 359.95580 * 12 11 10 14 14 F 1.35099 * 120.01597 * 180.02562 * 13 12 11 15 15 C 1.38406 * 119.97167 * 0.02725 * 13 12 11 16 16 C 1.38440 * 119.94906 * 359.74157 * 15 13 12 17 17 F 1.35095 * 120.01116 * 180.25559 * 16 15 13 18 18 C 1.53033 * 109.34316 * 174.40576 * 4 2 1 19 19 C 1.53044 * 109.53872 * 298.65168 * 18 4 2 20 20 C 1.53198 * 109.31057 * 61.36662 * 19 18 4 21 21 N 1.46929 * 108.77434 * 305.36423 * 20 19 18 22 22 C 1.36934 * 120.63076 * 233.61235 * 21 20 19 23 23 H 1.08001 * 119.99793 * 150.17318 * 22 21 20 24 24 C 1.38812 * 120.00048 * 330.17557 * 22 21 20 25 25 N 1.31621 * 119.99601 * 344.48779 * 24 22 21 26 26 Si 1.86798 * 120.00211 * 164.48526 * 24 22 21 27 27 H 1.48506 * 109.46835 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47029 * 119.99886 * 26 24 22 29 29 H 1.48503 * 109.47440 * 240.00277 * 26 24 22 30 30 H 1.08998 * 109.47275 * 299.63927 * 1 2 3 31 31 H 1.09004 * 109.47674 * 59.64247 * 1 2 3 32 32 H 1.09005 * 109.47444 * 179.64409 * 1 2 3 33 33 H 0.97001 * 119.99707 * 335.05696 * 6 4 2 34 34 H 1.09003 * 109.46977 * 300.00273 * 9 7 6 35 35 H 1.09001 * 109.46801 * 59.99636 * 9 7 6 36 36 H 1.08000 * 119.97494 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.99078 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.02091 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.45809 * 58.67445 * 18 4 2 40 40 H 1.09000 * 109.46552 * 178.63468 * 18 4 2 41 41 H 1.09003 * 109.49905 * 181.31232 * 19 18 4 42 42 H 1.08999 * 109.49579 * 301.41493 * 19 18 4 43 43 H 1.08995 * 109.58514 * 65.15081 * 20 19 18 44 44 H 1.09003 * 109.58396 * 185.43787 * 20 19 18 45 45 H 0.97005 * 119.99353 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 1 1.6025 -1.7251 1.2915 6 7 1.6705 0.0266 2.4434 7 6 1.5485 -0.6048 3.6279 8 8 1.7472 -1.7989 3.7018 9 6 1.1653 0.1730 4.8605 10 6 1.0971 -0.7599 6.0421 11 6 2.1524 -0.8252 6.9326 12 6 2.0914 -1.6805 8.0161 13 6 0.9724 -2.4727 8.2117 14 9 0.9128 -3.3085 9.2715 15 6 -0.0849 -2.4079 7.3209 16 6 -0.0248 -1.5471 6.2383 17 9 -1.0583 -1.4790 5.3710 18 6 3.5674 -0.8486 1.1704 19 6 3.9568 -1.6663 -0.0633 20 6 3.4656 -0.9471 -1.3235 21 7 2.0232 -0.6990 -1.1946 22 6 1.1544 -1.1120 -2.1692 23 1 0.1402 -1.3786 -1.9108 24 6 1.5772 -1.1880 -3.4891 25 7 2.6883 -0.5876 -3.8598 26 14 0.5695 -2.1425 -4.7392 27 1 -0.6265 -2.7194 -4.0742 28 1 0.1378 -1.2295 -5.8279 29 1 1.3956 -3.2369 -5.3094 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3634 -1.0277 -0.0064 33 1 1.5114 0.9817 2.3843 34 1 1.9111 0.9452 5.0493 35 1 0.1913 0.6380 4.7084 36 1 3.0251 -0.2073 6.7813 37 1 2.9166 -1.7311 8.7111 38 1 -0.9578 -3.0256 7.4724 39 1 4.0065 0.1465 1.0999 40 1 3.9374 -1.3458 2.0671 41 1 5.0411 -1.7706 -0.1032 42 1 3.4977 -2.6532 -0.0053 43 1 3.9914 0.0017 -1.4311 44 1 3.6546 -1.5707 -2.1973 45 1 2.9840 -0.6411 -4.7821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993366178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = -105.440161 kcal Electronic energy + Delta-G solvation = -29475.455305 eV Core-core repulsion = 25128.311687 eV Total energy + Delta-G solvation = -4347.143619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.05294 -50.02052 -41.16701 -39.89806 -38.97586 -35.85025 -34.30661 -33.73670 -33.32462 -31.79745 -31.00641 -28.59492 -27.56068 -26.79872 -24.24780 -24.08098 -22.93071 -22.31196 -21.36670 -20.94549 -19.24371 -18.39908 -18.29113 -17.98491 -17.45590 -16.98151 -16.90435 -16.74229 -16.32166 -16.11625 -16.07421 -15.58917 -15.53137 -15.42842 -15.03907 -14.82319 -14.66995 -14.51413 -14.27172 -13.87143 -13.36637 -13.28234 -12.99894 -12.91429 -12.84089 -12.72250 -12.67038 -12.51036 -12.36500 -12.31487 -12.00376 -11.80867 -11.75176 -11.60787 -11.17355 -10.86244 -10.53763 -10.05739 -9.94854 -9.62644 -8.63999 -7.86246 -5.32137 -0.09577 0.03089 1.44523 1.47819 1.56805 1.72721 2.11056 2.45661 2.58044 2.87405 3.29487 3.39183 3.53029 3.59173 3.63551 3.88946 3.90346 4.01228 4.10304 4.15097 4.23727 4.38108 4.47147 4.54493 4.57248 4.63787 4.77901 4.81577 4.87294 4.90308 4.93922 4.95689 5.05800 5.05917 5.14726 5.22040 5.25840 5.31500 5.46350 5.52012 5.62877 5.70905 5.76681 5.77769 6.42166 6.67344 7.16690 7.37050 7.87223 8.38292 9.20683 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002481 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.381752 B =11284.944822 C =11694.453005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.037 0.963 4 C 0.147 3.853 5 H 0.050 0.950 6 N -0.707 5.707 7 C 0.511 3.489 8 O -0.583 6.583 9 C -0.095 4.095 10 C -0.117 4.117 11 C -0.047 4.047 12 C -0.157 4.157 13 C 0.113 3.887 14 F -0.139 7.139 15 C -0.204 4.204 16 C 0.121 3.879 17 F -0.141 7.141 18 C -0.107 4.107 19 C -0.131 4.131 20 C 0.177 3.823 21 N -0.602 5.602 22 C -0.252 4.252 23 H 0.069 0.931 24 C -0.048 4.048 25 N -0.932 5.932 26 Si 0.958 3.042 27 H -0.270 1.270 28 H -0.291 1.291 29 H -0.293 1.293 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.415 0.585 34 H 0.153 0.847 35 H 0.124 0.876 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.006 0.994 44 H 0.051 0.949 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 5.148 25.037 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.058 3.942 3 H 0.055 0.945 4 C 0.041 3.959 5 H 0.069 0.931 6 N -0.359 5.359 7 C 0.298 3.702 8 O -0.462 6.462 9 C -0.134 4.134 10 C -0.118 4.118 11 C -0.065 4.065 12 C -0.176 4.176 13 C 0.094 3.906 14 F -0.117 7.117 15 C -0.223 4.223 16 C 0.102 3.898 17 F -0.120 7.120 18 C -0.145 4.145 19 C -0.171 4.171 20 C 0.051 3.949 21 N -0.325 5.325 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.243 4.243 25 N -0.578 5.578 26 Si 0.787 3.213 27 H -0.194 1.194 28 H -0.218 1.218 29 H -0.220 1.220 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.252 0.748 34 H 0.171 0.829 35 H 0.142 0.858 36 H 0.195 0.805 37 H 0.186 0.814 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.678 4.289 24.925 25.301 hybrid contribution -0.812 -0.679 -1.313 1.686 sum -1.490 3.610 23.612 23.933 Atomic orbital electron populations 1.21731 0.94682 1.00798 1.01334 1.20730 0.94089 0.93621 0.85725 0.94516 1.21233 0.94840 0.95340 0.84537 0.93147 1.45887 1.69978 1.12879 1.07122 1.21090 0.76061 0.87781 0.85229 1.90721 1.51887 1.17311 1.86316 1.20697 1.07407 0.97597 0.87695 1.19697 0.93882 0.99702 0.98527 1.21174 0.97388 0.96772 0.91140 1.21509 0.98036 0.97151 1.00868 1.17494 0.95702 0.91941 0.85499 1.91512 1.96686 1.69533 1.53987 1.21120 1.01791 1.03180 0.96216 1.17409 0.85806 0.97936 0.88683 1.91495 1.57007 1.95174 1.68302 1.21660 0.95300 1.00383 0.97185 1.22030 1.00266 0.98669 0.96094 1.20613 0.83196 0.96135 0.94948 1.44281 1.03142 1.65972 1.19155 1.19446 0.95414 1.36739 0.86656 0.91306 1.25742 0.99097 1.00798 0.98673 1.70166 1.25613 1.45417 1.16633 0.85339 0.78499 0.78151 0.79280 1.19430 1.21776 1.21985 0.90437 0.93328 0.94574 0.74786 0.82927 0.85793 0.80527 0.81356 0.83131 0.91193 0.92541 0.90931 0.94144 0.97574 0.93050 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.84 71.98 0.56 -3.98 16 2 C 0.16 6.32 3.03 44.97 0.14 6.45 16 3 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.15 5.00 1.99 45.06 0.09 5.09 16 5 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 6 N -0.71 -17.06 4.57 -442.18 -2.02 -19.08 16 7 C 0.51 12.71 7.78 87.66 0.68 13.40 16 8 O -0.58 -20.52 15.62 -3.04 -0.05 -20.57 16 9 C -0.09 -1.37 5.56 29.10 0.16 -1.21 16 10 C -0.12 -2.09 4.43 -19.82 -0.09 -2.18 16 11 C -0.05 -0.62 9.66 22.25 0.22 -0.40 16 12 C -0.16 -2.19 10.02 22.32 0.22 -1.96 16 13 C 0.11 2.09 7.30 22.37 0.16 2.25 16 14 F -0.14 -2.69 17.27 44.97 0.78 -1.92 16 15 C -0.20 -4.17 10.01 22.36 0.22 -3.95 16 16 C 0.12 2.70 7.14 22.37 0.16 2.86 16 17 F -0.14 -3.62 16.65 44.97 0.75 -2.87 16 18 C -0.11 -3.54 5.46 30.62 0.17 -3.38 16 19 C -0.13 -5.07 6.08 30.68 0.19 -4.88 16 20 C 0.18 8.41 5.28 86.36 0.46 8.86 16 21 N -0.60 -29.28 2.99 -675.21 -2.02 -31.30 16 22 C -0.25 -13.56 8.58 84.03 0.72 -12.84 16 23 H 0.07 3.65 6.23 -2.91 -0.02 3.63 16 24 C -0.05 -2.63 4.94 84.86 0.42 -2.22 16 25 N -0.93 -54.34 11.23 21.65 0.24 -54.10 16 26 Si 0.96 45.01 29.58 68.60 2.03 47.04 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 29 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 30 H 0.08 2.11 7.78 -2.39 -0.02 2.09 16 31 H 0.05 1.86 7.67 -2.38 -0.02 1.84 16 32 H 0.04 1.40 7.40 -2.38 -0.02 1.38 16 33 H 0.42 7.03 8.60 -92.71 -0.80 6.24 16 34 H 0.15 0.90 8.00 -2.39 -0.02 0.88 16 35 H 0.12 1.43 7.93 -2.39 -0.02 1.41 16 36 H 0.18 1.08 8.04 -2.91 -0.02 1.06 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 44 H 0.05 2.80 6.15 -2.39 -0.01 2.78 16 45 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -72.30 373.01 4.42 -67.88 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.22 Total: 13.00 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.48 Total: 1.92 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.80 Total: -104.48 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.53 Total: -4.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.30 4.42 -67.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993366178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.560 kcal (2) G-P(sol) polarization free energy of solvation -72.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds