Wall clock time and date at job start Tue Mar 31 2020 20:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.70061 * 2 1 4 4 C 1.53199 * 109.58450 * 120.34894 * 2 1 3 5 5 H 1.08995 * 109.49930 * 294.41069 * 4 2 1 6 6 N 1.46500 * 109.49383 * 54.47168 * 4 2 1 7 7 C 1.34774 * 119.99720 * 204.99466 * 6 4 2 8 8 O 1.21277 * 120.00307 * 0.02562 * 7 6 4 9 9 C 1.50708 * 119.99544 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.46688 * 180.02562 * 9 7 6 11 11 C 1.38263 * 119.96537 * 90.00642 * 10 9 7 12 12 C 1.38207 * 120.07024 * 179.74739 * 11 10 9 13 13 C 1.38412 * 120.00261 * 0.24409 * 12 11 10 14 14 F 1.35099 * 120.03554 * 180.02562 * 13 12 11 15 15 C 1.38646 * 119.92590 * 0.02562 * 13 12 11 16 16 F 1.35106 * 120.03154 * 179.97438 * 15 13 12 17 17 C 1.38211 * 119.96667 * 270.25518 * 10 9 7 18 18 C 1.53043 * 109.31356 * 174.42396 * 4 2 1 19 19 C 1.53042 * 109.53739 * 298.63922 * 18 4 2 20 20 C 1.53191 * 109.31395 * 61.36453 * 19 18 4 21 21 N 1.46922 * 109.59116 * 239.63893 * 2 1 3 22 22 C 1.36937 * 120.62766 * 6.58778 * 21 2 1 23 23 H 1.08000 * 120.00090 * 330.17258 * 22 21 2 24 24 C 1.38810 * 120.00042 * 150.17458 * 22 21 2 25 25 N 1.31628 * 119.99728 * 344.48628 * 24 22 21 26 26 Si 1.86803 * 120.00356 * 164.48872 * 24 22 21 27 27 H 1.48495 * 109.46660 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.46943 * 119.99882 * 26 24 22 29 29 H 1.48497 * 109.47252 * 240.00018 * 26 24 22 30 30 H 1.08999 * 109.47425 * 299.64815 * 1 2 3 31 31 H 1.09001 * 109.46386 * 59.65090 * 1 2 3 32 32 H 1.08993 * 109.46945 * 179.64652 * 1 2 3 33 33 H 0.97007 * 120.00023 * 25.00567 * 6 4 2 34 34 H 1.08999 * 109.47018 * 60.01019 * 9 7 6 35 35 H 1.08995 * 109.47162 * 300.00322 * 9 7 6 36 36 H 1.08002 * 119.95787 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.00026 * 180.23105 * 12 11 10 38 38 H 1.07996 * 120.00084 * 359.97438 * 17 10 9 39 39 H 1.09000 * 109.45813 * 58.65360 * 18 4 2 40 40 H 1.08996 * 109.46137 * 178.61510 * 18 4 2 41 41 H 1.09002 * 109.49413 * 301.41041 * 19 18 4 42 42 H 1.08994 * 109.49636 * 181.31328 * 19 18 4 43 43 H 1.09004 * 109.58741 * 185.57947 * 20 19 18 44 44 H 1.08995 * 109.70368 * 65.22097 * 20 19 18 45 45 H 0.97004 * 119.99598 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 1.2456 5 1 1.7654 -0.1670 2.1369 6 7 1.4513 -2.0678 1.3073 7 6 1.3283 -2.6962 2.4933 8 8 1.7075 -2.1534 3.5093 9 6 0.7196 -4.0734 2.5567 10 6 0.6977 -4.5475 3.9870 11 6 -0.3974 -4.2786 4.7870 12 6 -0.4220 -4.7169 6.0975 13 6 0.6526 -5.4214 6.6119 14 9 0.6291 -5.8506 7.8927 15 6 1.7532 -5.6862 5.8113 16 9 2.8035 -6.3732 6.3115 17 6 1.7746 -5.2461 4.4992 18 6 3.5675 -0.8479 1.1704 19 6 3.9570 -1.6657 -0.0632 20 6 3.4652 -0.9470 -1.3235 21 7 2.0226 -0.6996 -1.1943 22 6 1.1538 -1.1136 -2.1684 23 1 0.1399 -1.3808 -1.9096 24 6 1.5762 -1.1897 -3.4885 25 7 2.6867 -0.5886 -3.8599 26 14 0.5686 -2.1453 -4.7380 27 1 -0.6260 -2.7238 -4.0722 28 1 0.1359 -1.2329 -5.8268 29 1 1.3953 -3.2392 -5.3081 30 1 -0.3634 0.5083 0.8931 31 1 -0.3632 0.5193 -0.8869 32 1 -0.3633 -1.0276 -0.0063 33 1 1.1478 -2.5019 0.4946 34 1 1.3135 -4.7612 1.9547 35 1 -0.2989 -4.0386 2.1701 36 1 -1.2364 -3.7294 4.3859 37 1 -1.2796 -4.5094 6.7203 38 1 2.6310 -5.4524 3.8745 39 1 4.0061 0.1475 1.0995 40 1 3.9377 -1.3446 2.0672 41 1 3.4984 -2.6528 -0.0049 42 1 5.0412 -1.7695 -0.1033 43 1 3.6520 -1.5718 -2.1969 44 1 3.9902 0.0018 -1.4340 45 1 2.9817 -0.6415 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993723352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:11 Heat of formation + Delta-G solvation = -86.685607 kcal Electronic energy + Delta-G solvation = -29683.121811 eV Core-core repulsion = 25336.791451 eV Total energy + Delta-G solvation = -4346.330360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.62137 -48.69881 -40.14947 -39.01479 -37.51814 -33.98265 -32.89473 -32.37766 -31.69784 -31.01560 -29.57333 -27.57115 -26.17382 -25.06288 -23.50463 -22.70834 -21.83815 -20.87178 -20.25862 -18.78910 -18.12371 -17.38620 -17.15685 -17.01122 -16.47474 -16.40734 -15.45098 -15.21125 -15.11442 -14.98764 -14.68561 -14.41347 -14.12237 -14.04339 -13.79190 -13.68196 -13.31557 -13.05125 -12.99752 -12.62988 -12.27791 -12.08701 -11.96888 -11.85700 -11.47445 -11.31915 -11.28538 -11.04871 -10.76853 -10.68095 -10.56703 -10.16983 -10.07464 -9.74520 -9.65294 -9.36019 -9.26367 -8.80256 -8.61736 -8.51165 -6.73956 -5.88210 -3.34147 0.68696 0.79894 2.87017 3.05061 3.28695 3.36482 3.38569 3.57325 3.67348 4.12570 4.27410 4.37581 4.38776 4.75421 4.87054 5.05676 5.14599 5.25018 5.26839 5.31888 5.50466 5.52688 5.56287 5.60762 5.68680 5.70651 5.77709 5.90723 6.06328 6.12821 6.16356 6.27052 6.35591 6.47701 6.52868 6.61144 6.61891 6.72240 6.88172 6.90458 7.04555 7.31229 7.59810 7.71214 7.93650 8.35168 8.54201 9.11065 9.74111 10.31627 11.19730 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.002668 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.852914 B =10491.500990 C =10747.749482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.039 0.961 4 C 0.135 3.865 5 H 0.075 0.925 6 N -0.699 5.699 7 C 0.510 3.490 8 O -0.548 6.548 9 C -0.108 4.108 10 C -0.037 4.037 11 C -0.086 4.086 12 C -0.124 4.124 13 C 0.061 3.939 14 F -0.132 7.132 15 C 0.068 3.932 16 F -0.131 7.131 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.139 4.139 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.257 4.257 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.409 0.591 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.018 0.982 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 -7.919 14.355 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.028 3.972 5 H 0.093 0.907 6 N -0.350 5.350 7 C 0.295 3.705 8 O -0.426 6.426 9 C -0.148 4.148 10 C -0.038 4.038 11 C -0.104 4.104 12 C -0.143 4.143 13 C 0.041 3.959 14 F -0.111 7.111 15 C 0.048 3.952 16 F -0.109 7.109 17 C -0.130 4.130 18 C -0.160 4.160 19 C -0.178 4.178 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.387 4.387 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.216 1.216 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.246 0.754 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.581 -7.543 14.946 17.357 hybrid contribution -0.219 -0.804 -0.842 1.185 sum -4.799 -8.347 14.104 17.077 Atomic orbital electron populations 1.21773 0.95628 1.01415 1.00419 1.20725 0.93344 0.93920 0.86844 0.94387 1.21534 0.92869 0.83016 0.99748 0.90652 1.46004 1.61457 1.18654 1.08930 1.20286 0.79293 0.86977 0.83973 1.90698 1.50186 1.67311 1.34413 1.20737 1.04334 0.95870 0.93835 1.19231 0.93199 0.95866 0.95468 1.20957 0.98618 0.98267 0.92549 1.21020 0.97760 0.98766 0.96724 1.17679 0.95978 1.02413 0.79847 1.91514 1.96705 1.88036 1.34833 1.17602 0.85169 0.99233 0.93168 1.91526 1.54813 1.76981 1.87598 1.20933 0.99878 0.99058 0.93147 1.21768 0.95538 1.00469 0.98193 1.22128 0.98921 0.99498 0.97283 1.20787 0.83202 0.97185 0.94270 1.44167 1.03085 1.64861 1.18855 1.19171 0.95202 1.38153 0.86143 0.91152 1.25124 0.97775 0.99346 0.97048 1.70039 1.24025 1.43468 1.16695 0.86281 0.79578 0.79578 0.81622 1.20228 1.21791 1.21630 0.94244 0.91814 0.92772 0.75442 0.87447 0.87317 0.84235 0.83697 0.83758 0.91983 0.93168 0.92865 0.93503 0.89678 0.96399 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.73 37.16 0.29 -1.97 16 2 C 0.16 2.94 3.20 -67.60 -0.22 2.73 16 3 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 4 C 0.13 2.22 2.33 -67.81 -0.16 2.06 16 5 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 6 N -0.70 -10.24 3.46 -53.68 -0.19 -10.43 16 7 C 0.51 7.05 7.79 -10.98 -0.09 6.97 16 8 O -0.55 -9.46 15.70 5.56 0.09 -9.38 16 9 C -0.11 -1.05 5.83 -29.03 -0.17 -1.22 16 10 C -0.04 -0.38 4.37 -104.62 -0.46 -0.84 16 11 C -0.09 -0.80 9.70 -39.58 -0.38 -1.19 16 12 C -0.12 -1.17 10.02 -39.53 -0.40 -1.56 16 13 C 0.06 0.70 7.31 -39.37 -0.29 0.41 16 14 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 15 C 0.07 0.82 7.31 -39.37 -0.29 0.54 16 16 F -0.13 -1.69 17.18 2.25 0.04 -1.65 16 17 C -0.11 -1.23 9.68 -39.53 -0.38 -1.61 16 18 C -0.12 -2.03 5.58 -26.69 -0.15 -2.18 16 19 C -0.14 -2.48 5.93 -26.61 -0.16 -2.64 16 20 C 0.17 3.73 5.28 -3.71 -0.02 3.71 16 21 N -0.59 -12.73 2.64 -164.77 -0.44 -13.17 16 22 C -0.26 -6.13 8.58 -15.06 -0.13 -6.26 16 23 H 0.07 1.61 6.23 -52.49 -0.33 1.29 16 24 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 25 N -0.90 -24.39 11.23 55.49 0.62 -23.76 16 26 Si 0.90 20.01 29.58 -169.99 -5.03 14.98 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 32 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 33 H 0.41 6.04 7.77 -40.82 -0.32 5.72 16 34 H 0.11 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 2.10 6.15 -51.93 -0.32 1.78 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -28.93 370.66 -8.61 -37.54 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.26 Total: 4.84 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -3.08 Total: -2.99 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.00 Total: -47.36 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.93 -8.61 -37.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993723352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.147 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds