Wall clock time and date at job start Tue Mar 31 2020 20:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.70061 * 2 1 4 4 C 1.53199 * 109.58450 * 120.34894 * 2 1 3 5 5 H 1.08995 * 109.49930 * 294.41069 * 4 2 1 6 6 N 1.46500 * 109.49383 * 54.47168 * 4 2 1 7 7 C 1.34774 * 119.99720 * 204.99466 * 6 4 2 8 8 O 1.21277 * 120.00307 * 0.02562 * 7 6 4 9 9 C 1.50708 * 119.99544 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.46688 * 180.02562 * 9 7 6 11 11 C 1.38263 * 119.96537 * 90.00642 * 10 9 7 12 12 C 1.38207 * 120.07024 * 179.74739 * 11 10 9 13 13 C 1.38412 * 120.00261 * 0.24409 * 12 11 10 14 14 F 1.35099 * 120.03554 * 180.02562 * 13 12 11 15 15 C 1.38646 * 119.92590 * 0.02562 * 13 12 11 16 16 F 1.35106 * 120.03154 * 179.97438 * 15 13 12 17 17 C 1.38211 * 119.96667 * 270.25518 * 10 9 7 18 18 C 1.53043 * 109.31356 * 174.42396 * 4 2 1 19 19 C 1.53042 * 109.53739 * 298.63922 * 18 4 2 20 20 C 1.53191 * 109.31395 * 61.36453 * 19 18 4 21 21 N 1.46922 * 109.59116 * 239.63893 * 2 1 3 22 22 C 1.36937 * 120.62766 * 6.58778 * 21 2 1 23 23 H 1.08000 * 120.00090 * 330.17258 * 22 21 2 24 24 C 1.38810 * 120.00042 * 150.17458 * 22 21 2 25 25 N 1.31628 * 119.99728 * 344.48628 * 24 22 21 26 26 Si 1.86803 * 120.00356 * 164.48872 * 24 22 21 27 27 H 1.48495 * 109.46660 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.46943 * 119.99882 * 26 24 22 29 29 H 1.48497 * 109.47252 * 240.00018 * 26 24 22 30 30 H 1.08999 * 109.47425 * 299.64815 * 1 2 3 31 31 H 1.09001 * 109.46386 * 59.65090 * 1 2 3 32 32 H 1.08993 * 109.46945 * 179.64652 * 1 2 3 33 33 H 0.97007 * 120.00023 * 25.00567 * 6 4 2 34 34 H 1.08999 * 109.47018 * 60.01019 * 9 7 6 35 35 H 1.08995 * 109.47162 * 300.00322 * 9 7 6 36 36 H 1.08002 * 119.95787 * 0.02562 * 11 10 9 37 37 H 1.08002 * 120.00026 * 180.23105 * 12 11 10 38 38 H 1.07996 * 120.00084 * 359.97438 * 17 10 9 39 39 H 1.09000 * 109.45813 * 58.65360 * 18 4 2 40 40 H 1.08996 * 109.46137 * 178.61510 * 18 4 2 41 41 H 1.09002 * 109.49413 * 301.41041 * 19 18 4 42 42 H 1.08994 * 109.49636 * 181.31328 * 19 18 4 43 43 H 1.09004 * 109.58741 * 185.57947 * 20 19 18 44 44 H 1.08995 * 109.70368 * 65.22097 * 20 19 18 45 45 H 0.97004 * 119.99598 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 1.2456 5 1 1.7654 -0.1670 2.1369 6 7 1.4513 -2.0678 1.3073 7 6 1.3283 -2.6962 2.4933 8 8 1.7075 -2.1534 3.5093 9 6 0.7196 -4.0734 2.5567 10 6 0.6977 -4.5475 3.9870 11 6 -0.3974 -4.2786 4.7870 12 6 -0.4220 -4.7169 6.0975 13 6 0.6526 -5.4214 6.6119 14 9 0.6291 -5.8506 7.8927 15 6 1.7532 -5.6862 5.8113 16 9 2.8035 -6.3732 6.3115 17 6 1.7746 -5.2461 4.4992 18 6 3.5675 -0.8479 1.1704 19 6 3.9570 -1.6657 -0.0632 20 6 3.4652 -0.9470 -1.3235 21 7 2.0226 -0.6996 -1.1943 22 6 1.1538 -1.1136 -2.1684 23 1 0.1399 -1.3808 -1.9096 24 6 1.5762 -1.1897 -3.4885 25 7 2.6867 -0.5886 -3.8599 26 14 0.5686 -2.1453 -4.7380 27 1 -0.6260 -2.7238 -4.0722 28 1 0.1359 -1.2329 -5.8268 29 1 1.3953 -3.2392 -5.3081 30 1 -0.3634 0.5083 0.8931 31 1 -0.3632 0.5193 -0.8869 32 1 -0.3633 -1.0276 -0.0063 33 1 1.1478 -2.5019 0.4946 34 1 1.3135 -4.7612 1.9547 35 1 -0.2989 -4.0386 2.1701 36 1 -1.2364 -3.7294 4.3859 37 1 -1.2796 -4.5094 6.7203 38 1 2.6310 -5.4524 3.8745 39 1 4.0061 0.1475 1.0995 40 1 3.9377 -1.3446 2.0672 41 1 3.4984 -2.6528 -0.0049 42 1 5.0412 -1.7695 -0.1033 43 1 3.6520 -1.5718 -2.1969 44 1 3.9902 0.0018 -1.4340 45 1 2.9817 -0.6415 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993723352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:10 Heat of formation + Delta-G solvation = -101.128067 kcal Electronic energy + Delta-G solvation = -29683.748083 eV Core-core repulsion = 25336.791451 eV Total energy + Delta-G solvation = -4346.956632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.51605 -49.60249 -41.24595 -40.03590 -38.83286 -35.52956 -34.05350 -33.62142 -33.20686 -31.79878 -31.10120 -28.56730 -27.58917 -26.76469 -24.29641 -23.95028 -23.07841 -22.33110 -21.45199 -20.22011 -18.98647 -18.26257 -18.19601 -18.12860 -17.90172 -17.32323 -17.01051 -16.46749 -16.24895 -16.03426 -15.66865 -15.56138 -15.43642 -15.08787 -14.95178 -14.91122 -14.74796 -14.37986 -14.21068 -14.01124 -13.53932 -13.05829 -12.93065 -12.88017 -12.86815 -12.73249 -12.61306 -12.39291 -12.26900 -12.22743 -12.11153 -11.85527 -11.63333 -11.32251 -10.98298 -10.80069 -10.47185 -10.04818 -9.81545 -9.63612 -8.56827 -7.77866 -5.24807 -0.12649 0.03526 1.52374 1.56291 1.64089 1.81699 2.19406 2.57370 2.64619 2.79790 3.29307 3.39278 3.50003 3.63276 3.65312 3.97282 4.03684 4.12165 4.13750 4.18276 4.25740 4.43547 4.44680 4.62983 4.65208 4.71669 4.77863 4.82021 4.88524 4.94166 5.00777 5.03879 5.04881 5.08767 5.17972 5.28325 5.37690 5.39793 5.53127 5.59236 5.72689 5.75542 5.79944 5.84352 6.48474 6.80445 7.23396 7.44104 7.93758 8.47529 9.29074 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.002668 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.852914 B =10491.500990 C =10747.749482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.023 0.977 4 C 0.146 3.854 5 H 0.078 0.922 6 N -0.698 5.698 7 C 0.512 3.488 8 O -0.582 6.582 9 C -0.100 4.100 10 C -0.044 4.044 11 C -0.082 4.082 12 C -0.118 4.118 13 C 0.044 3.956 14 F -0.142 7.142 15 C 0.045 3.955 16 F -0.143 7.143 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.124 4.124 20 C 0.179 3.821 21 N -0.595 5.595 22 C -0.242 4.242 23 H 0.086 0.914 24 C -0.052 4.052 25 N -0.939 5.939 26 Si 0.958 3.042 27 H -0.256 1.256 28 H -0.305 1.305 29 H -0.298 1.298 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.411 0.589 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.054 0.946 44 H -0.011 1.011 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 -8.852 15.361 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.041 0.959 4 C 0.039 3.961 5 H 0.096 0.904 6 N -0.349 5.349 7 C 0.300 3.700 8 O -0.463 6.463 9 C -0.139 4.139 10 C -0.045 4.045 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.024 3.976 14 F -0.120 7.120 15 C 0.025 3.975 16 F -0.122 7.122 17 C -0.137 4.137 18 C -0.155 4.155 19 C -0.163 4.163 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.372 4.372 23 H 0.103 0.897 24 C -0.247 4.247 25 N -0.586 5.586 26 Si 0.788 3.212 27 H -0.180 1.180 28 H -0.233 1.233 29 H -0.226 1.226 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.248 0.752 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.169 0.831 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.007 0.993 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.856 -8.496 15.983 19.356 hybrid contribution 0.473 -0.442 -1.087 1.265 sum -6.383 -8.938 14.896 18.508 Atomic orbital electron populations 1.21694 0.93885 1.02133 1.00701 1.20848 0.94768 0.93126 0.86315 0.95937 1.21218 0.92462 0.84089 0.98298 0.90442 1.45945 1.61523 1.17902 1.09522 1.20906 0.78295 0.88016 0.82797 1.90695 1.51616 1.68509 1.35442 1.20770 1.06115 0.93168 0.93827 1.19414 0.93285 0.95756 0.96049 1.21334 0.98988 0.97429 0.92226 1.21343 0.97701 0.97461 0.97173 1.17987 0.96703 1.03292 0.79614 1.91486 1.96796 1.88290 1.35455 1.17885 0.85371 1.00277 0.93993 1.91484 1.55463 1.77435 1.87843 1.21099 1.00568 0.99203 0.92829 1.21716 0.96033 1.00173 0.97531 1.21928 0.99511 0.99270 0.95580 1.20557 0.83514 0.95569 0.95050 1.44353 1.02801 1.65343 1.19406 1.19566 0.95705 1.35755 0.86214 0.89664 1.25816 0.98931 1.00976 0.98997 1.70202 1.26105 1.45913 1.16364 0.85334 0.78814 0.77795 0.79251 1.17994 1.23282 1.22568 0.91820 0.93729 0.91709 0.75215 0.85573 0.84154 0.81513 0.81117 0.83119 0.92217 0.92705 0.92192 0.92471 0.92781 0.99275 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 7.73 71.98 0.56 -3.36 16 2 C 0.16 5.56 3.20 44.98 0.14 5.71 16 3 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 4 C 0.15 4.51 2.33 45.07 0.10 4.62 16 5 H 0.08 2.43 7.58 -2.39 -0.02 2.41 16 6 N -0.70 -18.28 3.46 -442.15 -1.53 -19.81 16 7 C 0.51 12.44 7.79 87.66 0.68 13.13 16 8 O -0.58 -18.55 15.70 -3.02 -0.05 -18.60 16 9 C -0.10 -1.52 5.83 29.10 0.17 -1.35 16 10 C -0.04 -0.78 4.37 -19.86 -0.09 -0.87 16 11 C -0.08 -1.23 9.70 22.27 0.22 -1.02 16 12 C -0.12 -1.90 10.02 22.30 0.22 -1.68 16 13 C 0.04 0.96 7.31 22.41 0.16 1.12 16 14 F -0.14 -3.37 17.18 44.97 0.77 -2.60 16 15 C 0.04 1.05 7.31 22.41 0.16 1.21 16 16 F -0.14 -3.75 17.18 44.97 0.77 -2.98 16 17 C -0.12 -2.42 9.68 22.30 0.22 -2.20 16 18 C -0.12 -3.72 5.58 30.62 0.17 -3.55 16 19 C -0.12 -4.30 5.93 30.67 0.18 -4.11 16 20 C 0.18 7.90 5.28 86.36 0.46 8.35 16 21 N -0.60 -25.54 2.64 -675.21 -1.78 -27.32 16 22 C -0.24 -11.29 8.58 84.03 0.72 -10.57 16 23 H 0.09 3.69 6.23 -2.91 -0.02 3.67 16 24 C -0.05 -2.64 4.94 84.86 0.42 -2.22 16 25 N -0.94 -52.40 11.23 21.65 0.24 -52.16 16 26 Si 0.96 41.04 29.58 68.60 2.03 43.07 16 27 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.54 7.67 -2.39 -0.02 1.53 16 32 H 0.06 1.86 6.37 -2.39 -0.02 1.84 16 33 H 0.41 10.70 7.77 -92.70 -0.72 9.98 16 34 H 0.13 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.14 1.32 8.08 -2.39 -0.02 1.30 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 2.74 6.15 -2.38 -0.01 2.72 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.24 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -63.90 370.66 5.26 -58.65 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.30 Total: 18.55 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.50 Total: 3.20 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -3.07 Total: -99.29 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.55 Total: -5.58 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.90 5.26 -58.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993723352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.482 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds