Wall clock time and date at job start Tue Mar 31 2020 20:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.58512 * 2 1 4 4 C 1.53188 * 109.58770 * 120.28155 * 2 1 3 5 5 H 1.08997 * 109.49679 * 54.57965 * 4 2 1 6 6 N 1.46506 * 109.49859 * 294.51821 * 4 2 1 7 7 C 1.34772 * 120.00091 * 155.00281 * 6 4 2 8 8 O 1.21281 * 119.99967 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00033 * 180.27427 * 7 6 4 10 10 C 1.50699 * 109.47014 * 179.72071 * 9 7 6 11 11 C 1.38260 * 119.96420 * 269.72036 * 10 9 7 12 12 C 1.38208 * 120.06723 * 179.76695 * 11 10 9 13 13 C 1.38409 * 120.00463 * 0.51521 * 12 11 10 14 14 F 1.35099 * 120.04103 * 179.72318 * 13 12 11 15 15 C 1.38656 * 119.92495 * 359.74041 * 13 12 11 16 16 F 1.35102 * 120.03207 * 180.02562 * 15 13 12 17 17 C 1.38207 * 119.96400 * 89.99959 * 10 9 7 18 18 C 1.53042 * 109.31189 * 174.56625 * 4 2 1 19 19 C 1.53035 * 109.53686 * 298.63468 * 18 4 2 20 20 C 1.53194 * 109.31477 * 61.36585 * 19 18 4 21 21 N 1.46920 * 108.77383 * 305.36411 * 20 19 18 22 22 C 1.36933 * 120.63167 * 233.62793 * 21 20 19 23 23 H 1.08004 * 120.00026 * 150.17097 * 22 21 20 24 24 C 1.38813 * 119.99989 * 330.16846 * 22 21 20 25 25 N 1.31614 * 119.99795 * 344.48608 * 24 22 21 26 26 Si 1.86797 * 119.99864 * 164.47771 * 24 22 21 27 27 H 1.48508 * 109.47200 * 90.00379 * 26 24 22 28 28 H 1.48494 * 109.47374 * 210.00120 * 26 24 22 29 29 H 1.48500 * 109.47629 * 330.00436 * 26 24 22 30 30 H 1.08999 * 109.46649 * 299.71794 * 1 2 3 31 31 H 1.09003 * 109.47252 * 59.71596 * 1 2 3 32 32 H 1.09000 * 109.47198 * 179.72127 * 1 2 3 33 33 H 0.97003 * 119.99597 * 334.99884 * 6 4 2 34 34 H 1.08998 * 109.46828 * 299.72182 * 9 7 6 35 35 H 1.09008 * 109.46977 * 59.72425 * 9 7 6 36 36 H 1.08000 * 119.96678 * 0.03002 * 11 10 9 37 37 H 1.08009 * 120.00233 * 180.25791 * 12 11 10 38 38 H 1.08004 * 120.00278 * 359.95604 * 17 10 9 39 39 H 1.08997 * 109.46149 * 58.66068 * 18 4 2 40 40 H 1.09004 * 109.45652 * 178.61161 * 18 4 2 41 41 H 1.09006 * 109.49848 * 301.41472 * 19 18 4 42 42 H 1.09002 * 109.49846 * 181.32208 * 19 18 4 43 43 H 1.08998 * 109.58721 * 185.58062 * 20 19 18 44 44 H 1.09000 * 109.70143 * 65.21919 * 20 19 18 45 45 H 0.97001 * 119.99807 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.6045 -1.7243 1.2925 6 7 1.6676 0.0281 2.4437 7 6 1.5442 -0.6032 3.6280 8 8 1.7440 -1.7971 3.7025 9 6 1.1514 0.1733 4.8585 10 6 1.0775 -0.7603 6.0391 11 6 -0.1133 -1.3921 6.3464 12 6 -0.1824 -2.2524 7.4258 13 6 0.9385 -2.4741 8.2070 14 9 0.8704 -3.3106 9.2657 15 6 2.1313 -1.8363 7.9020 16 9 3.2269 -2.0515 8.6628 17 6 2.1985 -0.9795 6.8171 18 6 3.5679 -0.8432 1.1729 19 6 3.9604 -1.6607 -0.0599 20 6 3.4685 -0.9435 -1.3211 21 7 2.0254 -0.6991 -1.1936 22 6 1.1585 -1.1152 -2.1685 23 1 0.1448 -1.3842 -1.9107 24 6 1.5826 -1.1912 -3.4880 25 7 2.6923 -0.5882 -3.8584 26 14 0.5784 -2.1496 -4.7380 27 1 -0.4169 -1.2469 -5.3704 28 1 1.4809 -2.6995 -5.7812 29 1 -0.1273 -3.2643 -4.0563 30 1 -0.3632 0.5095 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.5075 0.9830 2.3840 34 1 1.8946 0.9466 5.0527 35 1 0.1776 0.6367 4.7001 36 1 -0.9894 -1.2165 5.7397 37 1 -1.1121 -2.7487 7.6624 38 1 3.1272 -0.4824 6.5784 39 1 4.0046 0.1529 1.1022 40 1 3.9381 -1.3389 2.0703 41 1 3.5037 -2.6488 -0.0018 42 1 5.0450 -1.7625 -0.0988 43 1 3.6575 -1.5684 -2.1940 44 1 3.9917 0.0063 -1.4313 45 1 2.9889 -0.6417 -4.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993723355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:15 Heat of formation + Delta-G solvation = -87.341586 kcal Electronic energy + Delta-G solvation = -29162.261494 eV Core-core repulsion = 24815.902688 eV Total energy + Delta-G solvation = -4346.358806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.67818 -48.75572 -40.21633 -39.00510 -37.57389 -34.34252 -33.00265 -32.50499 -31.67685 -31.08895 -29.44576 -27.64963 -26.09136 -25.01274 -23.57806 -22.81695 -21.77341 -20.73575 -20.23018 -19.39045 -18.18273 -17.46221 -17.22900 -17.06682 -16.49084 -16.37431 -15.77214 -15.19008 -15.16802 -15.02236 -14.74363 -14.43606 -14.20181 -13.99209 -13.82956 -13.70356 -13.40301 -13.30014 -12.84333 -12.62104 -12.33719 -12.17051 -12.07938 -11.71594 -11.58471 -11.54241 -11.15251 -10.96058 -10.77010 -10.61151 -10.34060 -10.17721 -10.07549 -9.95966 -9.67394 -9.42214 -9.32631 -8.87565 -8.72494 -8.48651 -6.70252 -5.83206 -3.27865 0.61159 0.72790 2.72000 2.94476 3.34429 3.41754 3.43137 3.47162 3.53267 4.05051 4.18282 4.28643 4.46073 4.67525 4.77873 4.85504 5.00571 5.15596 5.26064 5.34797 5.43676 5.48135 5.52274 5.56197 5.61859 5.70890 5.75246 5.92661 6.03148 6.04475 6.17018 6.28741 6.35314 6.45725 6.48807 6.59078 6.67671 6.71349 6.81324 6.94352 7.02593 7.36186 7.62890 7.68122 7.78225 8.34874 8.42316 9.16494 9.79229 10.35671 11.25556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.002299 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.483509 B =12174.561918 C =12515.639171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.086 0.914 6 N -0.718 5.718 7 C 0.510 3.490 8 O -0.534 6.534 9 C -0.106 4.106 10 C -0.041 4.041 11 C -0.085 4.085 12 C -0.123 4.123 13 C 0.063 3.937 14 F -0.131 7.131 15 C 0.069 3.931 16 F -0.130 7.130 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.582 5.582 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.397 0.603 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.087 0.913 44 H 0.019 0.981 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.712 3.913 20.972 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.025 3.975 5 H 0.104 0.896 6 N -0.368 5.368 7 C 0.295 3.705 8 O -0.411 6.411 9 C -0.146 4.146 10 C -0.042 4.042 11 C -0.103 4.103 12 C -0.142 4.142 13 C 0.043 3.957 14 F -0.110 7.110 15 C 0.049 3.951 16 F -0.109 7.109 17 C -0.131 4.131 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.305 5.305 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.037 0.963 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.458 3.002 20.885 21.381 hybrid contribution -0.191 -0.217 -0.412 0.503 sum -3.649 2.785 20.473 20.981 Atomic orbital electron populations 1.21813 0.95681 1.01681 1.00189 1.20556 0.93207 0.93544 0.86691 0.95546 1.21804 0.95045 0.96880 0.83774 0.89620 1.46146 1.70049 1.12239 1.08408 1.20317 0.77706 0.88147 0.84306 1.90747 1.49864 1.14957 1.85495 1.20740 1.05201 0.97723 0.90935 1.19197 0.92744 0.97336 0.94911 1.20961 0.98181 0.95215 0.95986 1.21040 0.97604 0.99978 0.95561 1.17696 0.94337 0.94888 0.88807 1.91521 1.96875 1.68878 1.53714 1.17602 0.82726 1.00996 0.93821 1.91529 1.51416 1.93656 1.74261 1.20911 1.00085 0.98473 0.93588 1.21754 0.95419 1.00007 0.98324 1.22181 0.99228 0.99725 0.96883 1.20821 0.83108 0.97202 0.94429 1.44022 1.03098 1.65098 1.18295 1.19134 0.95260 1.37878 0.86013 0.91277 1.25085 0.97877 0.99428 0.96988 1.70022 1.24085 1.43635 1.16811 0.86326 0.79380 0.80031 0.81205 1.21388 1.21561 1.20417 0.94306 0.91784 0.92698 0.76986 0.87510 0.87268 0.84186 0.83608 0.83777 0.92789 0.93255 0.92527 0.93019 0.89510 0.96256 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.85 37.16 0.29 -2.07 16 2 C 0.17 3.19 3.03 -67.60 -0.20 2.98 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.20 2.00 -67.81 -0.14 2.07 16 5 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 6 N -0.72 -8.97 4.57 -53.69 -0.25 -9.21 16 7 C 0.51 6.37 7.79 -10.99 -0.09 6.29 16 8 O -0.53 -9.15 15.70 5.56 0.09 -9.06 16 9 C -0.11 -0.81 5.83 -29.03 -0.17 -0.98 16 10 C -0.04 -0.38 4.37 -104.63 -0.46 -0.84 16 11 C -0.09 -0.73 9.70 -39.58 -0.38 -1.11 16 12 C -0.12 -1.09 10.02 -39.53 -0.40 -1.49 16 13 C 0.06 0.69 7.31 -39.36 -0.29 0.40 16 14 F -0.13 -1.54 17.18 2.25 0.04 -1.51 16 15 C 0.07 0.78 7.31 -39.36 -0.29 0.49 16 16 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 17 C -0.11 -1.11 9.68 -39.53 -0.38 -1.49 16 18 C -0.12 -2.00 5.46 -26.69 -0.15 -2.14 16 19 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 20 C 0.17 3.92 5.28 -3.71 -0.02 3.90 16 21 N -0.58 -13.74 2.99 -164.78 -0.49 -14.23 16 22 C -0.25 -6.58 8.58 -15.06 -0.13 -6.71 16 23 H 0.07 1.76 6.24 -52.48 -0.33 1.43 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.05 16 25 N -0.90 -25.35 11.23 55.49 0.62 -24.73 16 26 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.04 0.53 7.78 -51.93 -0.40 0.12 16 31 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 32 H 0.05 1.02 7.41 -51.93 -0.38 0.63 16 33 H 0.40 3.77 8.61 -40.82 -0.35 3.42 16 34 H 0.11 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.11 0.55 8.08 -51.92 -0.42 0.13 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 2.26 6.14 -51.93 -0.32 1.94 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -31.63 373.90 -8.74 -40.38 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.36 Total: 1.68 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.04 Total: -3.53 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.11 Total: -48.17 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.63 -8.74 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993723355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.964 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds