Wall clock time and date at job start Tue Mar 31 2020 20:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.70487 * 2 1 4 4 C 1.53191 * 109.59129 * 239.64071 * 2 1 3 5 5 H 1.09005 * 109.49710 * 305.56285 * 4 2 1 6 6 N 1.46500 * 109.49808 * 65.62604 * 4 2 1 7 7 C 1.34778 * 120.00311 * 205.00252 * 6 4 2 8 8 O 1.21284 * 119.99341 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00129 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.47108 * 179.97438 * 9 7 6 11 11 C 1.38207 * 119.99932 * 99.99944 * 10 9 7 12 12 C 1.38425 * 120.00176 * 180.02562 * 11 10 9 13 13 F 1.35095 * 120.00125 * 179.97438 * 12 11 10 14 14 C 1.38475 * 119.99697 * 0.02562 * 12 11 10 15 15 C 1.38162 * 120.00037 * 0.02562 * 14 12 11 16 16 C 1.38420 * 120.00004 * 280.04413 * 10 9 7 17 17 F 1.35100 * 120.00044 * 359.97435 * 16 10 9 18 18 C 1.53038 * 109.31395 * 185.57953 * 4 2 1 19 19 C 1.53040 * 109.54042 * 61.36610 * 18 4 2 20 20 C 1.53193 * 109.31058 * 298.63455 * 19 18 4 21 21 N 1.46928 * 109.58488 * 120.35046 * 2 1 3 22 22 C 1.36939 * 120.63239 * 353.37726 * 21 2 1 23 23 H 1.08004 * 119.99569 * 41.20758 * 22 21 2 24 24 C 1.38812 * 119.99957 * 221.21136 * 22 21 2 25 25 N 1.31621 * 119.99849 * 214.86897 * 24 22 21 26 26 Si 1.86801 * 120.00159 * 34.87542 * 24 22 21 27 27 H 1.48495 * 109.47352 * 84.62029 * 26 24 22 28 28 H 1.48505 * 109.46987 * 204.62405 * 26 24 22 29 29 H 1.48502 * 109.46676 * 324.62328 * 26 24 22 30 30 H 1.09002 * 109.46942 * 180.35706 * 1 2 3 31 31 H 1.09000 * 109.47457 * 300.35989 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.36149 * 1 2 3 33 33 H 0.97003 * 119.99300 * 25.00068 * 6 4 2 34 34 H 1.09000 * 109.46757 * 59.99621 * 9 7 6 35 35 H 1.09004 * 109.46876 * 300.00261 * 9 7 6 36 36 H 1.08008 * 119.99931 * 0.04391 * 11 10 9 37 37 H 1.07998 * 119.99710 * 179.97438 * 14 12 11 38 38 H 1.07999 * 119.99838 * 179.69851 * 15 14 12 39 39 H 1.09001 * 109.45893 * 181.38534 * 18 4 2 40 40 H 1.09000 * 109.46134 * 301.34653 * 18 4 2 41 41 H 1.09000 * 109.49774 * 178.68303 * 19 18 4 42 42 H 1.09004 * 109.49623 * 58.57920 * 19 18 4 43 43 H 1.08997 * 109.58953 * 294.84362 * 20 19 18 44 44 H 1.09004 * 109.70139 * 174.49285 * 20 19 18 45 45 H 0.97001 * 119.99865 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 1 1.6026 -1.7252 -1.2915 6 7 1.6706 0.0266 -2.4435 7 6 1.5473 -0.6051 -3.6277 8 8 1.7457 -1.7993 -3.7014 9 6 1.1643 0.1727 -4.8603 10 6 1.0956 -0.7602 -6.0418 11 6 -0.1275 -1.2314 -6.4801 12 6 -0.1905 -2.0887 -7.5651 13 9 -1.3861 -2.5497 -7.9932 14 6 0.9720 -2.4747 -8.2109 15 6 2.1948 -2.0046 -7.7720 16 6 2.2577 -1.1460 -6.6874 17 9 3.4533 -0.6857 -6.2587 18 6 3.5675 -0.8480 -1.1699 19 6 3.9569 -1.6657 0.0637 20 6 3.4650 -0.9468 1.3239 21 7 2.0224 -0.6995 1.1946 22 6 1.1536 -1.1126 2.1691 23 1 0.2055 -1.5521 1.8962 24 6 1.4914 -0.9664 3.5075 25 7 1.1103 -1.8704 4.3850 26 14 2.4867 0.5134 4.0634 27 1 1.5750 1.6600 4.3070 28 1 3.2099 0.1809 5.3170 29 1 3.4664 0.8757 3.0078 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.5124 0.9818 -2.3844 34 1 1.9107 0.9441 -5.0496 35 1 0.1908 0.6388 -4.7077 36 1 -1.0342 -0.9304 -5.9763 37 1 0.9228 -3.1440 -9.0571 38 1 3.1018 -2.3095 -8.2727 39 1 3.9379 -1.3449 -2.0666 40 1 4.0062 0.1473 -1.0991 41 1 5.0412 -1.7695 0.1040 42 1 3.4982 -2.6528 0.0055 43 1 3.9902 0.0021 1.4319 44 1 3.6520 -1.5695 2.1988 45 1 1.3460 -1.7680 5.3203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993732172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:19 Heat of formation + Delta-G solvation = -83.997955 kcal Electronic energy + Delta-G solvation = -29567.857048 eV Core-core repulsion = 25221.643233 eV Total energy + Delta-G solvation = -4346.213815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.19369 -49.14293 -40.12262 -38.99015 -37.72433 -34.38045 -33.34765 -32.71252 -31.73342 -30.54642 -30.00402 -28.00801 -26.24324 -24.87848 -23.44399 -22.90586 -21.87385 -20.82914 -20.25554 -19.56397 -17.95710 -17.52819 -17.48739 -17.14105 -16.45588 -15.98654 -15.89883 -15.53376 -15.14550 -14.86274 -14.68023 -14.52672 -14.39002 -13.83038 -13.81743 -13.68279 -13.44659 -13.34831 -13.08948 -12.90490 -12.51645 -12.16366 -12.09536 -11.94630 -11.85069 -11.41107 -11.37016 -11.17954 -10.77703 -10.59474 -10.41290 -10.36371 -10.11367 -9.91055 -9.72300 -9.52975 -9.37570 -8.79742 -8.77815 -8.37446 -6.76594 -6.11071 -3.42562 0.63604 0.70098 2.71078 2.93659 3.37917 3.39071 3.48833 3.53009 3.82959 3.90549 4.12440 4.29531 4.54763 4.60797 4.77957 4.81582 4.92912 4.98306 5.11614 5.24313 5.35814 5.38319 5.46461 5.59651 5.62037 5.66183 5.73326 5.78634 5.79650 5.92960 6.07339 6.23182 6.31505 6.33609 6.45367 6.46663 6.52527 6.57660 6.65243 6.86512 6.89632 6.99985 7.09944 7.64451 7.99901 8.32632 8.40459 8.96140 9.68309 10.16103 11.04168 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.002605 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.402947 B =10745.849037 C =11293.300374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.163 3.837 3 H 0.029 0.971 4 C 0.132 3.868 5 H 0.089 0.911 6 N -0.718 5.718 7 C 0.514 3.486 8 O -0.533 6.533 9 C -0.106 4.106 10 C -0.068 4.068 11 C -0.114 4.114 12 C 0.089 3.911 13 F -0.136 7.136 14 C -0.126 4.126 15 C -0.125 4.125 16 C 0.108 3.892 17 F -0.131 7.131 18 C -0.118 4.118 19 C -0.134 4.134 20 C 0.141 3.859 21 N -0.590 5.590 22 C -0.278 4.278 23 H 0.077 0.923 24 C 0.052 3.948 25 N -0.878 5.878 26 Si 0.843 3.157 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.260 1.260 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.397 0.603 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.025 0.975 44 H 0.068 0.932 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 5.307 -24.427 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.369 5.369 7 C 0.299 3.701 8 O -0.409 6.409 9 C -0.146 4.146 10 C -0.069 4.069 11 C -0.133 4.133 12 C 0.070 3.930 13 F -0.114 7.114 14 C -0.145 4.145 15 C -0.144 4.144 16 C 0.089 3.911 17 F -0.109 7.109 18 C -0.156 4.156 19 C -0.174 4.174 20 C 0.016 3.984 21 N -0.314 5.314 22 C -0.405 4.405 23 H 0.094 0.906 24 C -0.151 4.151 25 N -0.516 5.516 26 Si 0.670 3.330 27 H -0.215 1.215 28 H -0.224 1.224 29 H -0.185 1.185 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.230 0.770 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.025 4.350 -24.253 24.661 hybrid contribution 0.514 1.317 0.547 1.516 sum 1.539 5.667 -23.706 24.422 Atomic orbital electron populations 1.21772 0.94990 1.02166 1.00164 1.20702 0.93887 0.93270 0.86481 0.95369 1.21734 0.94898 0.97076 0.83661 0.89279 1.46084 1.70296 1.12149 1.08327 1.20233 0.77509 0.88115 0.84281 1.90739 1.49725 1.14911 1.85521 1.20662 1.05432 0.97772 0.90755 1.19147 0.91636 0.99505 0.96638 1.20880 0.98383 0.97798 0.96244 1.17577 0.81033 0.98160 0.96260 1.91519 1.43544 1.87251 1.89131 1.20971 0.90544 1.01580 1.01414 1.20952 0.98998 0.97801 0.96615 1.17463 0.80576 0.97598 0.95488 1.91520 1.43258 1.86965 1.89183 1.21760 0.95599 0.99956 0.98317 1.22031 0.99384 1.00009 0.95944 1.21352 0.84593 0.96765 0.95717 1.44276 1.02507 1.65438 1.19206 1.18564 1.02382 1.35344 0.84251 0.90562 1.25565 0.96765 0.96890 0.95855 1.70086 1.46955 1.31262 1.03313 0.87366 0.80731 0.86791 0.78092 1.21523 1.22376 1.18485 0.92357 0.91593 0.94332 0.76968 0.87316 0.87098 0.83675 0.83762 0.83653 0.92752 0.92743 0.92710 0.91727 0.95739 0.91330 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.96 37.15 0.30 -2.07 16 2 C 0.16 3.04 3.03 -67.60 -0.21 2.84 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.22 2.00 -67.81 -0.14 2.08 16 5 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 6 N -0.72 -9.33 4.57 -53.69 -0.25 -9.58 16 7 C 0.51 6.93 7.78 -10.99 -0.09 6.85 16 8 O -0.53 -9.55 15.61 5.55 0.09 -9.46 16 9 C -0.11 -0.97 5.55 -29.04 -0.16 -1.13 16 10 C -0.07 -0.70 4.43 -104.57 -0.46 -1.17 16 11 C -0.11 -1.10 9.65 -39.52 -0.38 -1.48 16 12 C 0.09 0.87 7.30 -39.43 -0.29 0.58 16 13 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 14 C -0.13 -1.05 10.02 -39.52 -0.40 -1.45 16 15 C -0.12 -1.10 10.02 -39.52 -0.40 -1.50 16 16 C 0.11 1.18 7.12 -39.43 -0.28 0.90 16 17 F -0.13 -1.57 16.66 2.25 0.04 -1.54 16 18 C -0.12 -1.96 5.46 -26.69 -0.15 -2.11 16 19 C -0.13 -2.43 6.08 -26.61 -0.16 -2.59 16 20 C 0.14 3.00 4.60 -3.71 -0.02 2.98 16 21 N -0.59 -13.42 2.47 -164.77 -0.41 -13.82 16 22 C -0.28 -7.38 8.43 -15.06 -0.13 -7.51 16 23 H 0.08 2.19 6.81 -52.48 -0.36 1.83 16 24 C 0.05 1.45 4.82 -17.43 -0.08 1.37 16 25 N -0.88 -25.90 13.97 55.49 0.78 -25.12 16 26 Si 0.84 20.82 27.39 -169.99 -4.66 16.17 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.26 -6.13 5.24 56.52 0.30 -5.84 16 30 H 0.06 1.14 7.38 -51.93 -0.38 0.75 16 31 H 0.07 1.26 7.71 -51.93 -0.40 0.86 16 32 H 0.04 0.54 7.78 -51.93 -0.40 0.14 16 33 H 0.40 3.94 8.61 -40.82 -0.35 3.59 16 34 H 0.11 0.80 7.94 -51.93 -0.41 0.38 16 35 H 0.11 0.69 8.01 -51.93 -0.42 0.28 16 36 H 0.15 1.14 8.04 -52.48 -0.42 0.72 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.52 6.71 -51.93 -0.35 0.17 16 44 H 0.07 1.58 7.01 -51.93 -0.36 1.22 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -32.35 370.37 -8.27 -40.63 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.45 Total: 1.93 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.03 Total: -3.42 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.12 Total: -48.52 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.66 Total: 16.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.35 -8.27 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993732172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.373 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds