Wall clock time and date at job start Tue Mar 31 2020 20:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.70487 * 2 1 4 4 C 1.53191 * 109.59129 * 239.64071 * 2 1 3 5 5 H 1.09005 * 109.49710 * 305.56285 * 4 2 1 6 6 N 1.46500 * 109.49808 * 65.62604 * 4 2 1 7 7 C 1.34778 * 120.00311 * 205.00252 * 6 4 2 8 8 O 1.21284 * 119.99341 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00129 * 180.02562 * 7 6 4 10 10 C 1.50700 * 109.47108 * 179.97438 * 9 7 6 11 11 C 1.38207 * 119.99932 * 99.99944 * 10 9 7 12 12 C 1.38425 * 120.00176 * 180.02562 * 11 10 9 13 13 F 1.35095 * 120.00125 * 179.97438 * 12 11 10 14 14 C 1.38475 * 119.99697 * 0.02562 * 12 11 10 15 15 C 1.38162 * 120.00037 * 0.02562 * 14 12 11 16 16 C 1.38420 * 120.00004 * 280.04413 * 10 9 7 17 17 F 1.35100 * 120.00044 * 359.97435 * 16 10 9 18 18 C 1.53038 * 109.31395 * 185.57953 * 4 2 1 19 19 C 1.53040 * 109.54042 * 61.36610 * 18 4 2 20 20 C 1.53193 * 109.31058 * 298.63455 * 19 18 4 21 21 N 1.46928 * 109.58488 * 120.35046 * 2 1 3 22 22 C 1.36939 * 120.63239 * 353.37726 * 21 2 1 23 23 H 1.08004 * 119.99569 * 41.20758 * 22 21 2 24 24 C 1.38812 * 119.99957 * 221.21136 * 22 21 2 25 25 N 1.31621 * 119.99849 * 214.86897 * 24 22 21 26 26 Si 1.86801 * 120.00159 * 34.87542 * 24 22 21 27 27 H 1.48495 * 109.47352 * 84.62029 * 26 24 22 28 28 H 1.48505 * 109.46987 * 204.62405 * 26 24 22 29 29 H 1.48502 * 109.46676 * 324.62328 * 26 24 22 30 30 H 1.09002 * 109.46942 * 180.35706 * 1 2 3 31 31 H 1.09000 * 109.47457 * 300.35989 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.36149 * 1 2 3 33 33 H 0.97003 * 119.99300 * 25.00068 * 6 4 2 34 34 H 1.09000 * 109.46757 * 59.99621 * 9 7 6 35 35 H 1.09004 * 109.46876 * 300.00261 * 9 7 6 36 36 H 1.08008 * 119.99931 * 0.04391 * 11 10 9 37 37 H 1.07998 * 119.99710 * 179.97438 * 14 12 11 38 38 H 1.07999 * 119.99838 * 179.69851 * 15 14 12 39 39 H 1.09001 * 109.45893 * 181.38534 * 18 4 2 40 40 H 1.09000 * 109.46134 * 301.34653 * 18 4 2 41 41 H 1.09000 * 109.49774 * 178.68303 * 19 18 4 42 42 H 1.09004 * 109.49623 * 58.57920 * 19 18 4 43 43 H 1.08997 * 109.58953 * 294.84362 * 20 19 18 44 44 H 1.09004 * 109.70139 * 174.49285 * 20 19 18 45 45 H 0.97001 * 119.99865 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 1 1.6026 -1.7252 -1.2915 6 7 1.6706 0.0266 -2.4435 7 6 1.5473 -0.6051 -3.6277 8 8 1.7457 -1.7993 -3.7014 9 6 1.1643 0.1727 -4.8603 10 6 1.0956 -0.7602 -6.0418 11 6 -0.1275 -1.2314 -6.4801 12 6 -0.1905 -2.0887 -7.5651 13 9 -1.3861 -2.5497 -7.9932 14 6 0.9720 -2.4747 -8.2109 15 6 2.1948 -2.0046 -7.7720 16 6 2.2577 -1.1460 -6.6874 17 9 3.4533 -0.6857 -6.2587 18 6 3.5675 -0.8480 -1.1699 19 6 3.9569 -1.6657 0.0637 20 6 3.4650 -0.9468 1.3239 21 7 2.0224 -0.6995 1.1946 22 6 1.1536 -1.1126 2.1691 23 1 0.2055 -1.5521 1.8962 24 6 1.4914 -0.9664 3.5075 25 7 1.1103 -1.8704 4.3850 26 14 2.4867 0.5134 4.0634 27 1 1.5750 1.6600 4.3070 28 1 3.2099 0.1809 5.3170 29 1 3.4664 0.8757 3.0078 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 1.5124 0.9818 -2.3844 34 1 1.9107 0.9441 -5.0496 35 1 0.1908 0.6388 -4.7077 36 1 -1.0342 -0.9304 -5.9763 37 1 0.9228 -3.1440 -9.0571 38 1 3.1018 -2.3095 -8.2727 39 1 3.9379 -1.3449 -2.0666 40 1 4.0062 0.1473 -1.0991 41 1 5.0412 -1.7695 0.1040 42 1 3.4982 -2.6528 0.0055 43 1 3.9902 0.0021 1.4319 44 1 3.6520 -1.5695 2.1988 45 1 1.3460 -1.7680 5.3203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993732172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:18 Heat of formation + Delta-G solvation = -103.487289 kcal Electronic energy + Delta-G solvation = -29568.702169 eV Core-core repulsion = 25221.643233 eV Total energy + Delta-G solvation = -4347.058936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.95819 -49.94216 -41.21299 -39.93880 -39.05769 -35.85944 -34.46986 -34.02110 -33.47481 -31.66602 -31.10581 -28.94400 -27.70591 -26.66360 -24.39526 -23.94818 -22.97069 -22.35419 -21.43200 -21.08490 -18.73951 -18.47359 -18.27507 -18.25304 -17.98886 -17.33941 -16.79957 -16.57402 -16.34372 -16.13084 -16.10508 -15.40293 -15.37959 -15.30531 -15.09007 -14.89135 -14.71842 -14.41068 -14.32491 -14.05761 -13.74014 -13.68603 -13.38442 -12.99687 -12.90669 -12.80631 -12.69646 -12.61565 -12.38299 -12.04709 -12.02189 -11.83163 -11.74068 -11.55135 -11.28263 -10.95110 -10.49312 -10.12689 -9.98561 -9.54146 -8.64607 -8.24116 -5.51862 -0.09110 0.01591 1.40625 1.47254 1.55707 1.68770 2.08387 2.46274 2.50110 2.96413 3.12265 3.20246 3.43044 3.45164 3.63172 3.85039 3.94760 3.99771 4.05981 4.12623 4.14982 4.30151 4.37652 4.46132 4.49900 4.58380 4.72922 4.74264 4.79862 4.93782 4.93848 4.99420 5.00505 5.02276 5.07132 5.10893 5.11384 5.23083 5.28378 5.41838 5.50516 5.64501 5.77193 5.95024 6.27660 6.63613 7.01713 7.33722 7.66496 8.15761 8.95778 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.002605 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.402947 B =10745.849037 C =11293.300374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.161 3.839 3 H 0.055 0.945 4 C 0.146 3.854 5 H 0.050 0.950 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.582 6.582 9 C -0.097 4.097 10 C -0.081 4.081 11 C -0.120 4.120 12 C 0.074 3.926 13 F -0.142 7.142 14 C -0.122 4.122 15 C -0.126 4.126 16 C 0.085 3.915 17 F -0.142 7.142 18 C -0.110 4.110 19 C -0.127 4.127 20 C 0.138 3.862 21 N -0.605 5.605 22 C -0.262 4.262 23 H 0.040 0.960 24 C -0.001 4.001 25 N -0.930 5.930 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.305 1.305 29 H -0.238 1.238 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.417 0.583 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 7.851 -26.876 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 H 0.072 0.928 4 C 0.039 3.961 5 H 0.068 0.932 6 N -0.358 5.358 7 C 0.299 3.701 8 O -0.461 6.461 9 C -0.136 4.136 10 C -0.083 4.083 11 C -0.139 4.139 12 C 0.055 3.945 13 F -0.121 7.121 14 C -0.140 4.140 15 C -0.144 4.144 16 C 0.066 3.934 17 F -0.120 7.120 18 C -0.149 4.149 19 C -0.167 4.167 20 C 0.013 3.987 21 N -0.330 5.330 22 C -0.392 4.392 23 H 0.058 0.942 24 C -0.200 4.200 25 N -0.572 5.572 26 Si 0.735 3.265 27 H -0.217 1.217 28 H -0.232 1.232 29 H -0.161 1.161 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.254 0.746 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.084 6.958 -26.749 27.718 hybrid contribution 0.132 0.421 1.190 1.270 sum 2.216 7.379 -25.559 26.695 Atomic orbital electron populations 1.21698 0.94653 1.00613 1.01387 1.20885 0.94277 0.94059 0.85246 0.92783 1.21233 0.94913 0.95425 0.84514 0.93204 1.45851 1.70009 1.12891 1.07065 1.20996 0.76121 0.87743 0.85213 1.90727 1.51768 1.17361 1.86269 1.20713 1.07942 0.97282 0.87695 1.19326 0.91645 1.00142 0.97179 1.21095 0.98850 0.97616 0.96292 1.17830 0.81262 0.98643 0.96792 1.91504 1.43943 1.87377 1.89227 1.21265 0.89856 1.01233 1.01687 1.21237 1.00055 0.97048 0.96109 1.17821 0.80457 0.98593 0.96525 1.91485 1.43867 1.87227 1.89438 1.21692 0.95249 1.00725 0.97190 1.21926 1.00788 0.98636 0.95301 1.21374 0.83912 0.97174 0.96192 1.44398 1.02713 1.66298 1.19580 1.18404 1.01546 1.33937 0.85269 0.94214 1.26095 0.98959 0.98950 0.96016 1.70190 1.50198 1.33189 1.03583 0.86325 0.79590 0.82842 0.77724 1.21684 1.23195 1.16116 0.95292 0.93349 0.90061 0.74609 0.84969 0.83637 0.82234 0.81322 0.81572 0.92867 0.90482 0.90033 0.94101 0.94312 0.93991 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 7.96 71.98 0.57 -3.79 16 2 C 0.16 5.71 3.03 44.97 0.14 5.85 16 3 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.15 4.70 2.00 45.07 0.09 4.79 16 5 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 6 N -0.71 -16.26 4.57 -442.16 -2.02 -18.29 16 7 C 0.51 12.67 7.78 87.66 0.68 13.35 16 8 O -0.58 -20.50 15.61 -3.04 -0.05 -20.55 16 9 C -0.10 -1.45 5.55 29.10 0.16 -1.29 16 10 C -0.08 -1.52 4.43 -19.83 -0.09 -1.61 16 11 C -0.12 -2.10 9.65 22.31 0.22 -1.88 16 12 C 0.07 1.33 7.30 22.37 0.16 1.49 16 13 F -0.14 -2.75 17.27 44.97 0.78 -1.97 16 14 C -0.12 -1.80 10.02 22.31 0.22 -1.58 16 15 C -0.13 -2.00 10.02 22.31 0.22 -1.78 16 16 C 0.09 1.72 7.12 22.37 0.16 1.88 16 17 F -0.14 -3.19 16.66 44.97 0.75 -2.44 16 18 C -0.11 -3.41 5.46 30.62 0.17 -3.24 16 19 C -0.13 -4.45 6.08 30.67 0.19 -4.26 16 20 C 0.14 5.72 4.60 86.36 0.40 6.11 16 21 N -0.60 -27.29 2.47 -675.22 -1.67 -28.96 16 22 C -0.26 -14.33 8.43 84.03 0.71 -13.62 16 23 H 0.04 2.42 6.81 -2.91 -0.02 2.40 16 24 C 0.00 -0.07 4.82 84.86 0.41 0.33 16 25 N -0.93 -56.97 13.97 21.65 0.30 -56.67 16 26 Si 0.91 43.36 27.39 68.60 1.88 45.23 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 29 H -0.24 -10.31 5.24 99.48 0.52 -9.79 16 30 H 0.03 1.14 7.38 -2.39 -0.02 1.13 16 31 H 0.05 1.83 7.71 -2.39 -0.02 1.81 16 32 H 0.08 2.07 7.78 -2.39 -0.02 2.05 16 33 H 0.42 6.39 8.61 -92.71 -0.80 5.59 16 34 H 0.13 1.39 7.94 -2.39 -0.02 1.37 16 35 H 0.15 1.16 8.01 -2.39 -0.02 1.14 16 36 H 0.16 2.17 8.04 -2.91 -0.02 2.15 16 37 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.51 6.71 -2.39 -0.02 1.49 16 44 H 0.04 1.94 7.01 -2.39 -0.02 1.92 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.00 370.37 4.42 -69.58 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.04 Total: 13.30 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.41 Total: 0.75 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -3.39 Total: -103.91 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.53 Total: -4.41 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.23 kcal Total: -74.00 4.42 -69.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993732172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.903 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds