Wall clock time and date at job start Tue Mar 31 2020 20:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58580 * 2 1 4 4 C 1.53189 * 109.58371 * 239.72377 * 2 1 3 5 5 H 1.09000 * 109.50005 * 65.45189 * 4 2 1 6 6 N 1.46507 * 109.49750 * 305.38304 * 4 2 1 7 7 C 1.34774 * 119.99850 * 155.00166 * 6 4 2 8 8 O 1.21285 * 120.00346 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00024 * 180.02562 * 7 6 4 10 10 C 1.50692 * 109.47379 * 180.02562 * 9 7 6 11 11 C 1.38208 * 120.00261 * 265.01713 * 10 9 7 12 12 C 1.38428 * 120.00656 * 179.97438 * 11 10 9 13 13 F 1.35089 * 120.00398 * 180.30275 * 12 11 10 14 14 C 1.38476 * 119.99311 * 0.03255 * 12 11 10 15 15 C 1.38155 * 120.00359 * 359.97075 * 14 12 11 16 16 C 1.38429 * 120.00130 * 85.00057 * 10 9 7 17 17 F 1.35103 * 120.00049 * 0.02562 * 16 10 9 18 18 C 1.53044 * 109.31353 * 185.43503 * 4 2 1 19 19 C 1.53040 * 109.53824 * 61.35984 * 18 4 2 20 20 C 1.53182 * 109.31432 * 298.63886 * 19 18 4 21 21 N 1.46922 * 109.70784 * 120.36311 * 2 1 3 22 22 C 1.36936 * 120.63021 * 353.43744 * 21 2 1 23 23 H 1.08010 * 119.99937 * 41.19898 * 22 21 2 24 24 C 1.38809 * 120.00612 * 221.19632 * 22 21 2 25 25 N 1.31617 * 120.00235 * 214.90061 * 24 22 21 26 26 Si 1.86802 * 119.99717 * 34.90047 * 24 22 21 27 27 H 1.48499 * 109.47427 * 84.62293 * 26 24 22 28 28 H 1.48504 * 109.47008 * 204.62902 * 26 24 22 29 29 H 1.48504 * 109.47078 * 324.62435 * 26 24 22 30 30 H 1.08995 * 109.46967 * 180.28119 * 1 2 3 31 31 H 1.09005 * 109.46955 * 300.27524 * 1 2 3 32 32 H 1.09004 * 109.47249 * 60.27617 * 1 2 3 33 33 H 0.96991 * 119.99763 * 335.00374 * 6 4 2 34 34 H 1.08997 * 109.47382 * 59.99534 * 9 7 6 35 35 H 1.09005 * 109.47047 * 300.00033 * 9 7 6 36 36 H 1.08001 * 119.99828 * 0.02590 * 11 10 9 37 37 H 1.07997 * 119.99505 * 179.97438 * 14 12 11 38 38 H 1.07999 * 120.00101 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46120 * 181.38411 * 18 4 2 40 40 H 1.09004 * 109.45532 * 301.34310 * 18 4 2 41 41 H 1.09002 * 109.49413 * 178.68141 * 19 18 4 42 42 H 1.08995 * 109.49523 * 58.59330 * 19 18 4 43 43 H 1.09000 * 109.58737 * 294.84677 * 20 19 18 44 44 H 1.09004 * 109.70804 * 174.49021 * 20 19 18 45 45 H 0.96998 * 119.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2464 5 1 1.7632 -0.1655 -2.1372 6 7 1.4539 -2.0675 -1.3081 7 6 1.3308 -2.6955 -2.4942 8 8 1.7084 -2.1518 -3.5104 9 6 0.7239 -4.0734 -2.5577 10 6 0.7025 -4.5475 -3.9880 11 6 -0.4319 -4.3715 -4.7575 12 6 -0.4514 -4.8065 -6.0715 13 9 -1.5581 -4.6289 -6.8255 14 6 0.6657 -5.4186 -6.6147 15 6 1.7997 -5.5946 -5.8455 16 6 1.8193 -5.1590 -4.5312 17 9 2.9283 -5.3312 -3.7789 18 6 3.5678 -0.8433 -1.1731 19 6 3.9603 -1.6608 0.0597 20 6 3.4686 -0.9437 1.3208 21 7 2.0254 -0.6992 1.1934 22 6 1.1587 -1.1145 2.1688 23 1 0.2110 -1.5556 1.8970 24 6 1.4980 -0.9688 3.5069 25 7 1.1201 -1.8744 4.3841 26 14 2.4908 0.5128 4.0627 27 1 1.5770 1.6572 4.3086 28 1 3.2166 0.1807 5.3150 29 1 3.4683 0.8781 3.0061 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5181 0.8876 32 1 -0.3634 0.5095 -0.8925 33 1 1.1523 -2.5024 -0.4953 34 1 -0.2944 -4.0402 -2.1703 35 1 1.3190 -4.7607 -1.9563 36 1 -1.3030 -3.8938 -4.3339 37 1 0.6504 -5.7584 -7.6397 38 1 2.6710 -6.0717 -6.2693 39 1 3.9380 -1.3389 -2.0706 40 1 4.0044 0.1530 -1.1023 41 1 5.0449 -1.7625 0.0984 42 1 3.5037 -2.6488 0.0014 43 1 3.9920 0.0063 1.4286 44 1 3.6579 -1.5664 2.1952 45 1 1.3569 -1.7723 5.3192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993732179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:23 Heat of formation + Delta-G solvation = -83.825848 kcal Electronic energy + Delta-G solvation = -30067.071671 eV Core-core repulsion = 25720.865319 eV Total energy + Delta-G solvation = -4346.206352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.12543 -49.04102 -40.05587 -38.97273 -37.64378 -33.97829 -33.21423 -32.59721 -31.77455 -30.48009 -30.08335 -27.89017 -26.32489 -24.90475 -23.35027 -22.76197 -22.01560 -20.96440 -20.23065 -18.90555 -17.86463 -17.42970 -17.40291 -17.05912 -16.56360 -15.92700 -15.47131 -15.42650 -15.17169 -15.01580 -14.61545 -14.48479 -14.17521 -13.81608 -13.76644 -13.54519 -13.49086 -13.14455 -12.97832 -12.81686 -12.53353 -12.23536 -12.03050 -11.95478 -11.76220 -11.36606 -11.26896 -11.24356 -10.80844 -10.68777 -10.57386 -10.29917 -9.98516 -9.75929 -9.70697 -9.51636 -9.28427 -8.70637 -8.61166 -8.40731 -6.79431 -6.16923 -3.48323 0.73195 0.79324 2.88094 3.05844 3.35717 3.46642 3.51978 3.61897 3.92757 4.00063 4.24611 4.41227 4.50985 4.69907 4.85345 4.89732 5.05919 5.15118 5.17246 5.30999 5.42839 5.45470 5.53471 5.56992 5.68387 5.74432 5.77029 5.83465 5.91985 5.98824 6.10831 6.14052 6.31100 6.33385 6.41743 6.49239 6.55664 6.57563 6.76337 6.86196 6.90165 6.95701 7.07481 7.92913 7.95051 8.30848 8.54057 8.91255 9.63439 10.12319 10.98121 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.002907 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.899336 B = 9630.989476 C = 9925.086351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.155 3.845 3 H 0.040 0.960 4 C 0.136 3.864 5 H 0.078 0.922 6 N -0.699 5.699 7 C 0.514 3.486 8 O -0.549 6.549 9 C -0.109 4.109 10 C -0.062 4.062 11 C -0.113 4.113 12 C 0.088 3.912 13 F -0.137 7.137 14 C -0.128 4.128 15 C -0.125 4.125 16 C 0.106 3.894 17 F -0.130 7.130 18 C -0.122 4.122 19 C -0.134 4.134 20 C 0.143 3.857 21 N -0.595 5.595 22 C -0.281 4.281 23 H 0.077 0.923 24 C 0.054 3.946 25 N -0.878 5.878 26 Si 0.843 3.157 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.260 1.260 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.411 0.589 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -6.664 -17.662 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 H 0.058 0.942 4 C 0.029 3.971 5 H 0.096 0.904 6 N -0.351 5.351 7 C 0.299 3.701 8 O -0.427 6.427 9 C -0.149 4.149 10 C -0.063 4.063 11 C -0.132 4.132 12 C 0.069 3.931 13 F -0.116 7.116 14 C -0.147 4.147 15 C -0.144 4.144 16 C 0.086 3.914 17 F -0.109 7.109 18 C -0.161 4.161 19 C -0.173 4.173 20 C 0.018 3.982 21 N -0.320 5.320 22 C -0.408 4.408 23 H 0.095 0.905 24 C -0.150 4.150 25 N -0.516 5.516 26 Si 0.670 3.330 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.185 1.185 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.248 0.752 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.217 -6.334 -18.161 19.235 hybrid contribution 0.488 0.729 0.953 1.296 sum 0.270 -5.604 -17.208 18.100 Atomic orbital electron populations 1.21737 0.94968 1.01877 1.00435 1.20856 0.93981 0.93691 0.86598 0.94224 1.21478 0.92728 0.83193 0.99658 0.90427 1.45975 1.61638 1.18436 1.09024 1.20210 0.79061 0.86868 0.83957 1.90684 1.50276 1.67311 1.34443 1.20663 1.04660 0.96091 0.93446 1.19186 0.92498 0.98430 0.96224 1.20874 0.99261 1.00709 0.92358 1.17574 0.83998 1.01793 0.89736 1.91509 1.50927 1.93526 1.75592 1.20938 0.91776 1.00829 1.01176 1.20933 0.99484 1.01799 0.92192 1.17490 0.83319 1.00707 0.89862 1.91526 1.50386 1.93284 1.75693 1.21776 0.95710 1.00343 0.98224 1.21986 0.99108 0.99844 0.96337 1.21303 0.84606 0.96782 0.95558 1.44419 1.02458 1.65282 1.19798 1.18536 1.02506 1.35499 0.84292 0.90524 1.25575 0.96706 0.96719 0.95951 1.70063 1.46911 1.31235 1.03374 0.87385 0.80736 0.86774 0.78071 1.21566 1.22485 1.18488 0.92474 0.91615 0.94211 0.75180 0.87047 0.87184 0.83742 0.83869 0.83728 0.92692 0.91942 0.93154 0.92051 0.95843 0.91505 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 7.85 37.16 0.29 -1.98 16 2 C 0.16 2.81 3.19 -67.60 -0.22 2.60 16 3 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 4 C 0.14 2.23 2.32 -67.81 -0.16 2.08 16 5 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 6 N -0.70 -10.79 3.47 -53.69 -0.19 -10.98 16 7 C 0.51 7.73 7.79 -10.99 -0.09 7.65 16 8 O -0.55 -9.95 15.70 5.55 0.09 -9.87 16 9 C -0.11 -1.26 5.60 -29.04 -0.16 -1.42 16 10 C -0.06 -0.73 4.38 -104.57 -0.46 -1.19 16 11 C -0.11 -1.22 9.66 -39.52 -0.38 -1.61 16 12 C 0.09 0.93 7.30 -39.42 -0.29 0.64 16 13 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 14 C -0.13 -1.16 10.02 -39.52 -0.40 -1.56 16 15 C -0.13 -1.20 10.02 -39.52 -0.40 -1.60 16 16 C 0.11 1.27 7.24 -39.42 -0.29 0.98 16 17 F -0.13 -1.73 16.56 2.25 0.04 -1.70 16 18 C -0.12 -1.99 5.58 -26.69 -0.15 -2.14 16 19 C -0.13 -2.28 5.93 -26.62 -0.16 -2.44 16 20 C 0.14 2.88 4.60 -3.72 -0.02 2.86 16 21 N -0.59 -12.52 2.12 -164.78 -0.35 -12.87 16 22 C -0.28 -6.90 8.44 -15.06 -0.13 -7.03 16 23 H 0.08 1.99 6.83 -52.48 -0.36 1.63 16 24 C 0.05 1.42 4.82 -17.43 -0.08 1.34 16 25 N -0.88 -24.75 13.97 55.49 0.78 -23.97 16 26 Si 0.84 20.40 27.39 -169.99 -4.66 15.75 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.26 -6.06 5.25 56.52 0.30 -5.76 16 30 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 31 H 0.06 1.23 7.72 -51.93 -0.40 0.83 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.41 6.53 7.78 -40.82 -0.32 6.21 16 34 H 0.11 1.03 8.05 -51.93 -0.42 0.61 16 35 H 0.11 1.19 7.79 -51.93 -0.40 0.78 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 43 H 0.02 0.49 6.71 -51.93 -0.35 0.14 16 44 H 0.07 1.47 7.01 -51.93 -0.36 1.11 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -29.46 367.24 -8.14 -37.60 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.35 Total: 4.77 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -3.07 Total: -2.81 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.24 Total: -47.83 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.66 Total: 15.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.46 -8.14 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993732179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.230 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds