Wall clock time and date at job start Tue Mar 31 2020 20:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58580 * 2 1 4 4 C 1.53189 * 109.58371 * 239.72377 * 2 1 3 5 5 H 1.09000 * 109.50005 * 65.45189 * 4 2 1 6 6 N 1.46507 * 109.49750 * 305.38304 * 4 2 1 7 7 C 1.34774 * 119.99850 * 155.00166 * 6 4 2 8 8 O 1.21285 * 120.00346 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00024 * 180.02562 * 7 6 4 10 10 C 1.50692 * 109.47379 * 180.02562 * 9 7 6 11 11 C 1.38208 * 120.00261 * 265.01713 * 10 9 7 12 12 C 1.38428 * 120.00656 * 179.97438 * 11 10 9 13 13 F 1.35089 * 120.00398 * 180.30275 * 12 11 10 14 14 C 1.38476 * 119.99311 * 0.03255 * 12 11 10 15 15 C 1.38155 * 120.00359 * 359.97075 * 14 12 11 16 16 C 1.38429 * 120.00130 * 85.00057 * 10 9 7 17 17 F 1.35103 * 120.00049 * 0.02562 * 16 10 9 18 18 C 1.53044 * 109.31353 * 185.43503 * 4 2 1 19 19 C 1.53040 * 109.53824 * 61.35984 * 18 4 2 20 20 C 1.53182 * 109.31432 * 298.63886 * 19 18 4 21 21 N 1.46922 * 109.70784 * 120.36311 * 2 1 3 22 22 C 1.36936 * 120.63021 * 353.43744 * 21 2 1 23 23 H 1.08010 * 119.99937 * 41.19898 * 22 21 2 24 24 C 1.38809 * 120.00612 * 221.19632 * 22 21 2 25 25 N 1.31617 * 120.00235 * 214.90061 * 24 22 21 26 26 Si 1.86802 * 119.99717 * 34.90047 * 24 22 21 27 27 H 1.48499 * 109.47427 * 84.62293 * 26 24 22 28 28 H 1.48504 * 109.47008 * 204.62902 * 26 24 22 29 29 H 1.48504 * 109.47078 * 324.62435 * 26 24 22 30 30 H 1.08995 * 109.46967 * 180.28119 * 1 2 3 31 31 H 1.09005 * 109.46955 * 300.27524 * 1 2 3 32 32 H 1.09004 * 109.47249 * 60.27617 * 1 2 3 33 33 H 0.96991 * 119.99763 * 335.00374 * 6 4 2 34 34 H 1.08997 * 109.47382 * 59.99534 * 9 7 6 35 35 H 1.09005 * 109.47047 * 300.00033 * 9 7 6 36 36 H 1.08001 * 119.99828 * 0.02590 * 11 10 9 37 37 H 1.07997 * 119.99505 * 179.97438 * 14 12 11 38 38 H 1.07999 * 120.00101 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.46120 * 181.38411 * 18 4 2 40 40 H 1.09004 * 109.45532 * 301.34310 * 18 4 2 41 41 H 1.09002 * 109.49413 * 178.68141 * 19 18 4 42 42 H 1.08995 * 109.49523 * 58.59330 * 19 18 4 43 43 H 1.09000 * 109.58737 * 294.84677 * 20 19 18 44 44 H 1.09004 * 109.70804 * 174.49021 * 20 19 18 45 45 H 0.96998 * 119.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2464 5 1 1.7632 -0.1655 -2.1372 6 7 1.4539 -2.0675 -1.3081 7 6 1.3308 -2.6955 -2.4942 8 8 1.7084 -2.1518 -3.5104 9 6 0.7239 -4.0734 -2.5577 10 6 0.7025 -4.5475 -3.9880 11 6 -0.4319 -4.3715 -4.7575 12 6 -0.4514 -4.8065 -6.0715 13 9 -1.5581 -4.6289 -6.8255 14 6 0.6657 -5.4186 -6.6147 15 6 1.7997 -5.5946 -5.8455 16 6 1.8193 -5.1590 -4.5312 17 9 2.9283 -5.3312 -3.7789 18 6 3.5678 -0.8433 -1.1731 19 6 3.9603 -1.6608 0.0597 20 6 3.4686 -0.9437 1.3208 21 7 2.0254 -0.6992 1.1934 22 6 1.1587 -1.1145 2.1688 23 1 0.2110 -1.5556 1.8970 24 6 1.4980 -0.9688 3.5069 25 7 1.1201 -1.8744 4.3841 26 14 2.4908 0.5128 4.0627 27 1 1.5770 1.6572 4.3086 28 1 3.2166 0.1807 5.3150 29 1 3.4683 0.8781 3.0061 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5181 0.8876 32 1 -0.3634 0.5095 -0.8925 33 1 1.1523 -2.5024 -0.4953 34 1 -0.2944 -4.0402 -2.1703 35 1 1.3190 -4.7607 -1.9563 36 1 -1.3030 -3.8938 -4.3339 37 1 0.6504 -5.7584 -7.6397 38 1 2.6710 -6.0717 -6.2693 39 1 3.9380 -1.3389 -2.0706 40 1 4.0044 0.1530 -1.1023 41 1 5.0449 -1.7625 0.0984 42 1 3.5037 -2.6488 0.0014 43 1 3.9920 0.0063 1.4286 44 1 3.6579 -1.5664 2.1952 45 1 1.3569 -1.7723 5.3192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993732179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:22 Heat of formation + Delta-G solvation = -98.948569 kcal Electronic energy + Delta-G solvation = -30067.727442 eV Core-core repulsion = 25720.865319 eV Total energy + Delta-G solvation = -4346.862122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.96296 -49.93688 -41.27022 -39.97312 -38.96183 -35.55652 -34.27929 -33.95734 -33.44799 -31.74904 -31.11758 -28.90133 -27.74993 -26.62343 -24.29957 -23.94142 -23.21215 -22.36273 -21.52762 -20.35531 -18.73329 -18.41628 -18.28735 -18.24572 -18.09694 -16.99451 -16.78434 -16.75291 -16.34318 -16.26033 -15.87044 -15.41106 -15.33323 -15.19713 -15.06566 -14.97021 -14.48654 -14.32890 -14.29924 -14.06155 -13.84339 -13.67400 -13.46118 -12.90434 -12.85016 -12.83376 -12.71763 -12.62428 -12.32922 -12.15098 -12.02007 -11.90452 -11.55591 -11.45354 -11.11893 -10.93092 -10.42809 -10.12086 -9.89504 -9.54038 -8.59051 -8.20506 -5.46025 -0.08664 0.02291 1.40061 1.49552 1.55451 1.70634 2.17268 2.51668 2.55026 3.01183 3.11968 3.19979 3.40583 3.44127 3.63620 3.88936 4.00167 4.04895 4.07325 4.11912 4.16047 4.32920 4.35412 4.49667 4.55466 4.64582 4.68671 4.75823 4.92342 4.93535 4.95030 4.99221 4.99737 5.03451 5.10418 5.11272 5.14948 5.27666 5.32675 5.45868 5.52567 5.70646 5.77493 5.99150 6.32623 6.68948 7.05900 7.32521 7.70687 8.21800 8.98511 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.002907 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.899336 B = 9630.989476 C = 9925.086351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.045 0.955 4 C 0.142 3.858 5 H 0.080 0.920 6 N -0.699 5.699 7 C 0.516 3.484 8 O -0.579 6.579 9 C -0.104 4.104 10 C -0.077 4.077 11 C -0.120 4.120 12 C 0.078 3.922 13 F -0.140 7.140 14 C -0.120 4.120 15 C -0.122 4.122 16 C 0.082 3.918 17 F -0.143 7.143 18 C -0.116 4.116 19 C -0.122 4.122 20 C 0.142 3.858 21 N -0.602 5.602 22 C -0.251 4.251 23 H 0.060 0.940 24 C 0.005 3.995 25 N -0.923 5.923 26 Si 0.890 3.110 27 H -0.298 1.298 28 H -0.309 1.309 29 H -0.245 1.245 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.025 0.975 44 H 0.044 0.956 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -6.625 -20.000 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.063 0.937 4 C 0.036 3.964 5 H 0.098 0.902 6 N -0.350 5.350 7 C 0.303 3.697 8 O -0.459 6.459 9 C -0.144 4.144 10 C -0.078 4.078 11 C -0.138 4.138 12 C 0.059 3.941 13 F -0.119 7.119 14 C -0.138 4.138 15 C -0.140 4.140 16 C 0.062 3.938 17 F -0.122 7.122 18 C -0.155 4.155 19 C -0.161 4.161 20 C 0.017 3.983 21 N -0.327 5.327 22 C -0.380 4.380 23 H 0.078 0.922 24 C -0.194 4.194 25 N -0.565 5.565 26 Si 0.719 3.281 27 H -0.226 1.226 28 H -0.236 1.236 29 H -0.169 1.169 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.246 0.754 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.173 0.827 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.245 -6.277 -20.531 21.471 hybrid contribution 0.311 0.698 1.544 1.723 sum 0.556 -5.580 -18.987 19.798 Atomic orbital electron populations 1.21670 0.94265 1.01763 1.00720 1.20985 0.94614 0.93805 0.85765 0.93688 1.21320 0.92934 0.83646 0.98529 0.90152 1.45971 1.61649 1.18130 1.09218 1.20702 0.78237 0.87732 0.83064 1.90666 1.51590 1.68343 1.35311 1.20670 1.05783 0.93876 0.94029 1.19247 0.92963 0.99239 0.96369 1.21028 0.99410 1.00743 0.92650 1.17776 0.84395 1.02193 0.89771 1.91502 1.51195 1.93604 1.75605 1.21270 0.90758 0.99421 1.02353 1.21234 1.00510 1.01035 0.91238 1.17852 0.83143 1.01887 0.90878 1.91488 1.51017 1.93526 1.76169 1.21732 0.95487 1.00740 0.97520 1.21845 1.00183 0.99091 0.95008 1.21279 0.84021 0.96724 0.96291 1.44505 1.02535 1.65846 1.19799 1.18497 1.01826 1.32959 0.84696 0.92246 1.25996 0.98557 0.98407 0.96453 1.70140 1.49977 1.32918 1.03466 0.86617 0.79712 0.84174 0.77639 1.22550 1.23619 1.16887 0.92792 0.93544 0.91695 0.75406 0.84716 0.86547 0.82688 0.80961 0.81298 0.92757 0.90859 0.91223 0.92724 0.95715 0.93754 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 7.85 71.98 0.57 -3.58 16 2 C 0.15 5.31 3.19 44.97 0.14 5.45 16 3 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 4 C 0.14 4.40 2.32 45.07 0.10 4.50 16 5 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 6 N -0.70 -20.56 3.47 -442.15 -1.53 -22.09 16 7 C 0.52 14.80 7.79 87.66 0.68 15.48 16 8 O -0.58 -20.22 15.70 -3.05 -0.05 -20.26 16 9 C -0.10 -2.28 5.60 29.10 0.16 -2.11 16 10 C -0.08 -1.72 4.38 -19.83 -0.09 -1.80 16 11 C -0.12 -2.41 9.66 22.31 0.22 -2.20 16 12 C 0.08 1.49 7.30 22.37 0.16 1.66 16 13 F -0.14 -2.81 17.27 44.97 0.78 -2.04 16 14 C -0.12 -1.85 10.02 22.31 0.22 -1.62 16 15 C -0.12 -2.07 10.02 22.31 0.22 -1.84 16 16 C 0.08 1.85 7.24 22.37 0.16 2.02 16 17 F -0.14 -3.69 16.56 44.97 0.74 -2.95 16 18 C -0.12 -3.52 5.58 30.62 0.17 -3.35 16 19 C -0.12 -3.94 5.93 30.67 0.18 -3.76 16 20 C 0.14 5.53 4.60 86.36 0.40 5.93 16 21 N -0.60 -24.70 2.12 -675.26 -1.43 -26.14 16 22 C -0.25 -12.31 8.44 84.03 0.71 -11.60 16 23 H 0.06 3.12 6.83 -2.91 -0.02 3.10 16 24 C 0.01 0.27 4.82 84.86 0.41 0.68 16 25 N -0.92 -53.25 13.97 21.65 0.30 -52.95 16 26 Si 0.89 42.40 27.39 68.60 1.88 44.28 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 29 H -0.24 -10.88 5.25 99.48 0.52 -10.36 16 30 H 0.05 1.79 6.37 -2.39 -0.02 1.77 16 31 H 0.05 1.69 7.72 -2.38 -0.02 1.67 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.41 12.55 7.78 -92.71 -0.72 11.83 16 34 H 0.13 2.25 8.05 -2.39 -0.02 2.23 16 35 H 0.12 2.39 7.79 -2.38 -0.02 2.37 16 36 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.84 7.53 -2.39 -0.02 1.82 16 43 H 0.02 0.97 6.71 -2.39 -0.02 0.96 16 44 H 0.04 1.93 7.01 -2.38 -0.02 1.91 16 45 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -63.11 367.24 5.23 -57.88 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.12 Total: 20.42 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 4.43 Total: 3.84 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -2.66 Total: -101.17 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.26 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 1.52 Total: -4.98 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -63.11 5.23 -57.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993732179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.070 kcal (2) G-P(sol) polarization free energy of solvation -63.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds