Wall clock time and date at job start Tue Mar 31 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70051 * 2 1 4 4 C 1.53192 * 109.58715 * 120.35767 * 2 1 3 5 5 H 1.09002 * 109.49761 * 54.43840 * 4 2 1 6 6 N 1.46495 * 109.49605 * 294.37499 * 4 2 1 7 7 C 1.34778 * 120.00537 * 155.06591 * 6 4 2 8 8 O 1.21284 * 119.99277 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00364 * 179.97438 * 7 6 4 10 10 C 1.50700 * 109.46966 * 179.97438 * 9 7 6 11 11 C 1.38257 * 120.00461 * 99.99990 * 10 9 7 12 12 C 1.38208 * 120.07643 * 179.97438 * 11 10 9 13 13 C 1.38264 * 120.06664 * 0.03772 * 12 11 10 14 14 C 1.38361 * 119.99990 * 359.97438 * 13 12 11 15 15 F 1.35099 * 120.03347 * 179.97438 * 14 13 12 16 16 C 1.38371 * 120.00216 * 279.72332 * 10 9 7 17 17 F 1.35100 * 120.03274 * 0.02562 * 16 10 9 18 18 C 1.53036 * 109.33845 * 174.40626 * 4 2 1 19 19 C 1.53039 * 109.53989 * 298.64614 * 18 4 2 20 20 C 1.53193 * 109.30814 * 61.36916 * 19 18 4 21 21 N 1.46932 * 108.77667 * 305.36304 * 20 19 18 22 22 C 1.36939 * 120.62788 * 233.61352 * 21 20 19 23 23 H 1.07996 * 119.99465 * 151.57578 * 22 21 20 24 24 C 1.38810 * 120.00133 * 331.56330 * 22 21 20 25 25 N 1.31624 * 119.99756 * 160.52050 * 24 22 21 26 26 Si 1.86799 * 120.00143 * 340.53167 * 24 22 21 27 27 H 1.48499 * 109.47513 * 94.85773 * 26 24 22 28 28 H 1.48501 * 109.46829 * 214.85489 * 26 24 22 29 29 H 1.48497 * 109.46959 * 334.85239 * 26 24 22 30 30 H 1.08997 * 109.47426 * 299.64524 * 1 2 3 31 31 H 1.09001 * 109.46976 * 59.64242 * 1 2 3 32 32 H 1.09000 * 109.47163 * 179.64132 * 1 2 3 33 33 H 0.97001 * 120.00160 * 335.06212 * 6 4 2 34 34 H 1.09000 * 109.47002 * 299.99635 * 9 7 6 35 35 H 1.09000 * 109.47054 * 60.00151 * 9 7 6 36 36 H 1.07999 * 119.95797 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.96586 * 180.02562 * 12 11 10 38 38 H 1.07996 * 119.99466 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.46507 * 58.67196 * 18 4 2 40 40 H 1.09006 * 109.45818 * 178.63908 * 18 4 2 41 41 H 1.09004 * 109.49796 * 181.31559 * 19 18 4 42 42 H 1.08992 * 109.50206 * 301.41815 * 19 18 4 43 43 H 1.09001 * 109.58721 * 65.15373 * 20 19 18 44 44 H 1.09003 * 109.58768 * 185.57488 * 20 19 18 45 45 H 0.96992 * 120.00117 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.6025 -1.7252 1.2916 6 7 1.6705 0.0266 2.4434 7 6 1.5484 -0.6047 3.6279 8 8 1.7470 -1.7989 3.7018 9 6 1.1652 0.1732 4.8604 10 6 1.0969 -0.7596 6.0421 11 6 2.1521 -0.8253 6.9330 12 6 2.0908 -1.6799 8.0175 13 6 0.9743 -2.4716 8.2133 14 6 -0.0833 -2.4084 7.3234 15 9 -1.1743 -3.1821 7.5138 16 6 -0.0243 -1.5463 6.2386 17 9 -1.0580 -1.4791 5.3713 18 6 3.5674 -0.8487 1.1705 19 6 3.9568 -1.6665 -0.0631 20 6 3.4657 -0.9472 -1.3233 21 7 2.0232 -0.6992 -1.1945 22 6 1.1545 -1.1122 -2.1692 23 1 0.1340 -1.3571 -1.9143 24 6 1.5855 -1.2159 -3.4846 25 7 0.9121 -1.9539 -4.3415 26 14 3.1214 -0.3084 -4.0385 27 1 4.2920 -1.2181 -3.9528 28 1 2.9490 0.1455 -5.4419 29 1 3.3441 0.8689 -3.1613 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 1.5114 0.9816 2.3843 34 1 1.9111 0.9453 5.0493 35 1 0.1912 0.6382 4.7083 36 1 3.0253 -0.2081 6.7813 37 1 2.9159 -1.7295 8.7125 38 1 0.9274 -3.1386 9.0613 39 1 4.0066 0.1464 1.1000 40 1 3.9372 -1.3460 2.0672 41 1 5.0411 -1.7708 -0.1030 42 1 3.4978 -2.6533 -0.0052 43 1 3.9915 0.0015 -1.4310 44 1 3.6525 -1.5719 -2.1968 45 1 1.2134 -2.0267 -5.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993888280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:45 Heat of formation + Delta-G solvation = -79.057132 kcal Electronic energy + Delta-G solvation = -29723.447560 eV Core-core repulsion = 25377.447995 eV Total energy + Delta-G solvation = -4345.999565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.62636 -48.70502 -40.17069 -39.07650 -37.82473 -34.47085 -33.24330 -32.72801 -31.72545 -30.58849 -30.13864 -28.05765 -26.30403 -24.90180 -23.22508 -23.11435 -22.07924 -20.89757 -20.28890 -19.59084 -18.11818 -17.56588 -17.21548 -17.13761 -16.51336 -16.30733 -15.90270 -15.23213 -15.19283 -15.09114 -15.02541 -14.57802 -14.41825 -13.92774 -13.78255 -13.70267 -13.52569 -13.31534 -13.14502 -12.52585 -12.43698 -12.30293 -12.08419 -11.93969 -11.83646 -11.53792 -11.37271 -11.29840 -10.92154 -10.68745 -10.45874 -10.35929 -9.99156 -9.89752 -9.57672 -9.44669 -9.18379 -8.98334 -8.83078 -8.61629 -6.99535 -5.94727 -3.33369 0.64631 0.67555 2.69054 2.94427 3.31606 3.37763 3.47127 3.49326 3.53340 4.05800 4.16042 4.35435 4.52030 4.60157 4.73490 4.76926 4.92616 4.98047 5.08651 5.20327 5.35224 5.42157 5.44725 5.50956 5.54277 5.64585 5.70104 5.76465 5.86784 5.90971 5.99621 6.17618 6.20980 6.28147 6.39981 6.44359 6.45406 6.49020 6.59502 6.68491 6.78632 6.94369 7.03209 7.61706 7.94429 8.30628 8.35295 8.91793 9.70970 10.06414 11.20643 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002660 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.668796 B =10523.323178 C =11035.316201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 H 0.032 0.968 4 C 0.130 3.870 5 H 0.090 0.910 6 N -0.718 5.718 7 C 0.514 3.486 8 O -0.532 6.532 9 C -0.106 4.106 10 C -0.070 4.070 11 C -0.091 4.091 12 C -0.101 4.101 13 C -0.128 4.128 14 C 0.067 3.933 15 F -0.129 7.129 16 C 0.086 3.914 17 F -0.123 7.123 18 C -0.117 4.117 19 C -0.133 4.133 20 C 0.124 3.876 21 N -0.597 5.597 22 C -0.261 4.261 23 H 0.092 0.908 24 C 0.025 3.975 25 N -0.908 5.908 26 Si 0.882 3.118 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.270 1.270 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.397 0.603 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 6.585 25.622 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.064 3.936 3 H 0.050 0.950 4 C 0.024 3.976 5 H 0.108 0.892 6 N -0.368 5.368 7 C 0.298 3.702 8 O -0.408 6.408 9 C -0.146 4.146 10 C -0.071 4.071 11 C -0.109 4.109 12 C -0.119 4.119 13 C -0.147 4.147 14 C 0.047 3.953 15 F -0.108 7.108 16 C 0.066 3.934 17 F -0.102 7.102 18 C -0.156 4.156 19 C -0.173 4.173 20 C -0.001 4.001 21 N -0.322 5.322 22 C -0.389 4.389 23 H 0.110 0.890 24 C -0.174 4.174 25 N -0.551 5.551 26 Si 0.713 3.287 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.195 1.195 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.467 5.627 25.431 26.276 hybrid contribution 0.453 0.716 -0.651 1.068 sum 3.919 6.342 24.780 25.877 Atomic orbital electron populations 1.21828 0.94829 1.02366 1.00439 1.20567 0.93942 0.93293 0.85755 0.95003 1.21757 0.94865 0.97236 0.83731 0.89180 1.46056 1.70374 1.12184 1.08236 1.20253 0.77486 0.88117 0.84301 1.90743 1.49668 1.14867 1.85557 1.20659 1.05389 0.97732 0.90797 1.19267 0.92915 0.97912 0.97052 1.20990 0.97374 0.98945 0.93608 1.21023 0.97581 0.95331 0.97973 1.21083 0.92675 1.01393 0.99575 1.17656 0.86385 0.94347 0.96958 1.91532 1.51684 1.72739 1.94839 1.17485 0.87068 0.99377 0.89472 1.91542 1.55912 1.95080 1.67637 1.21762 0.95629 0.99954 0.98244 1.22003 0.99527 1.00097 0.95627 1.21402 0.85059 0.97139 0.96541 1.44346 1.02166 1.65879 1.19762 1.18925 0.95491 1.38725 0.85794 0.89012 1.25279 0.97610 0.98697 0.95775 1.69822 1.41225 1.39103 1.04928 0.86949 0.83475 0.81260 0.77032 1.21694 1.23257 1.19473 0.94055 0.91471 0.92200 0.76925 0.87025 0.87335 0.84300 0.84184 0.83784 0.92627 0.92594 0.92517 0.91498 0.95557 0.90883 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.83 37.16 0.29 -2.18 16 2 C 0.17 3.20 3.03 -67.60 -0.21 2.99 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.13 2.17 1.99 -67.82 -0.14 2.03 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 6 N -0.72 -9.18 4.57 -53.69 -0.25 -9.42 16 7 C 0.51 6.87 7.78 -10.99 -0.09 6.78 16 8 O -0.53 -9.54 15.62 5.55 0.09 -9.45 16 9 C -0.11 -0.95 5.56 -29.04 -0.16 -1.11 16 10 C -0.07 -0.72 4.42 -104.57 -0.46 -1.18 16 11 C -0.09 -0.71 9.67 -39.59 -0.38 -1.10 16 12 C -0.10 -0.70 10.04 -39.58 -0.40 -1.10 16 13 C -0.13 -1.07 10.02 -39.53 -0.40 -1.46 16 14 C 0.07 0.76 7.31 -39.37 -0.29 0.48 16 15 F -0.13 -1.63 17.18 2.25 0.04 -1.60 16 16 C 0.09 1.07 7.14 -39.37 -0.28 0.79 16 17 F -0.12 -1.77 16.57 2.25 0.04 -1.73 16 18 C -0.12 -1.89 5.46 -26.69 -0.15 -2.04 16 19 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 20 C 0.12 2.66 4.19 -3.71 -0.02 2.64 16 21 N -0.60 -13.75 2.76 -164.76 -0.45 -14.20 16 22 C -0.26 -7.09 9.07 -15.06 -0.14 -7.22 16 23 H 0.09 2.64 6.36 -52.49 -0.33 2.31 16 24 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 25 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 26 Si 0.88 22.06 24.35 -169.99 -4.14 17.92 16 27 H -0.29 -7.04 6.72 56.52 0.38 -6.66 16 28 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 29 H -0.27 -6.54 6.44 56.52 0.36 -6.18 16 30 H 0.04 0.60 7.78 -51.93 -0.40 0.19 16 31 H 0.07 1.30 7.65 -51.93 -0.40 0.90 16 32 H 0.06 1.20 7.41 -51.93 -0.38 0.81 16 33 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 34 H 0.11 0.61 8.00 -51.93 -0.42 0.19 16 35 H 0.11 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.14 0.73 8.04 -52.49 -0.42 0.31 16 37 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.03 0.55 6.95 -51.93 -0.36 0.19 16 44 H 0.07 1.73 4.61 -51.93 -0.24 1.49 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -34.06 366.21 -7.71 -41.77 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.27 Total: 1.66 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.06 Total: -3.60 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.07 Total: -50.49 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.06 -7.71 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993888280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.287 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds