Wall clock time and date at job start Tue Mar 31 2020 20:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.70051 * 2 1 4 4 C 1.53192 * 109.58715 * 120.35767 * 2 1 3 5 5 H 1.09002 * 109.49761 * 54.43840 * 4 2 1 6 6 N 1.46495 * 109.49605 * 294.37499 * 4 2 1 7 7 C 1.34778 * 120.00537 * 155.06591 * 6 4 2 8 8 O 1.21284 * 119.99277 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00364 * 179.97438 * 7 6 4 10 10 C 1.50700 * 109.46966 * 179.97438 * 9 7 6 11 11 C 1.38257 * 120.00461 * 99.99990 * 10 9 7 12 12 C 1.38208 * 120.07643 * 179.97438 * 11 10 9 13 13 C 1.38264 * 120.06664 * 0.03772 * 12 11 10 14 14 C 1.38361 * 119.99990 * 359.97438 * 13 12 11 15 15 F 1.35099 * 120.03347 * 179.97438 * 14 13 12 16 16 C 1.38371 * 120.00216 * 279.72332 * 10 9 7 17 17 F 1.35100 * 120.03274 * 0.02562 * 16 10 9 18 18 C 1.53036 * 109.33845 * 174.40626 * 4 2 1 19 19 C 1.53039 * 109.53989 * 298.64614 * 18 4 2 20 20 C 1.53193 * 109.30814 * 61.36916 * 19 18 4 21 21 N 1.46932 * 108.77667 * 305.36304 * 20 19 18 22 22 C 1.36939 * 120.62788 * 233.61352 * 21 20 19 23 23 H 1.07996 * 119.99465 * 151.57578 * 22 21 20 24 24 C 1.38810 * 120.00133 * 331.56330 * 22 21 20 25 25 N 1.31624 * 119.99756 * 160.52050 * 24 22 21 26 26 Si 1.86799 * 120.00143 * 340.53167 * 24 22 21 27 27 H 1.48499 * 109.47513 * 94.85773 * 26 24 22 28 28 H 1.48501 * 109.46829 * 214.85489 * 26 24 22 29 29 H 1.48497 * 109.46959 * 334.85239 * 26 24 22 30 30 H 1.08997 * 109.47426 * 299.64524 * 1 2 3 31 31 H 1.09001 * 109.46976 * 59.64242 * 1 2 3 32 32 H 1.09000 * 109.47163 * 179.64132 * 1 2 3 33 33 H 0.97001 * 120.00160 * 335.06212 * 6 4 2 34 34 H 1.09000 * 109.47002 * 299.99635 * 9 7 6 35 35 H 1.09000 * 109.47054 * 60.00151 * 9 7 6 36 36 H 1.07999 * 119.95797 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.96586 * 180.02562 * 12 11 10 38 38 H 1.07996 * 119.99466 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.46507 * 58.67196 * 18 4 2 40 40 H 1.09006 * 109.45818 * 178.63908 * 18 4 2 41 41 H 1.09004 * 109.49796 * 181.31559 * 19 18 4 42 42 H 1.08992 * 109.50206 * 301.41815 * 19 18 4 43 43 H 1.09001 * 109.58721 * 65.15373 * 20 19 18 44 44 H 1.09003 * 109.58768 * 185.57488 * 20 19 18 45 45 H 0.96992 * 120.00117 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.6025 -1.7252 1.2916 6 7 1.6705 0.0266 2.4434 7 6 1.5484 -0.6047 3.6279 8 8 1.7470 -1.7989 3.7018 9 6 1.1652 0.1732 4.8604 10 6 1.0969 -0.7596 6.0421 11 6 2.1521 -0.8253 6.9330 12 6 2.0908 -1.6799 8.0175 13 6 0.9743 -2.4716 8.2133 14 6 -0.0833 -2.4084 7.3234 15 9 -1.1743 -3.1821 7.5138 16 6 -0.0243 -1.5463 6.2386 17 9 -1.0580 -1.4791 5.3713 18 6 3.5674 -0.8487 1.1705 19 6 3.9568 -1.6665 -0.0631 20 6 3.4657 -0.9472 -1.3233 21 7 2.0232 -0.6992 -1.1945 22 6 1.1545 -1.1122 -2.1692 23 1 0.1340 -1.3571 -1.9143 24 6 1.5855 -1.2159 -3.4846 25 7 0.9121 -1.9539 -4.3415 26 14 3.1214 -0.3084 -4.0385 27 1 4.2920 -1.2181 -3.9528 28 1 2.9490 0.1455 -5.4419 29 1 3.3441 0.8689 -3.1613 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 1.5114 0.9816 2.3843 34 1 1.9111 0.9453 5.0493 35 1 0.1912 0.6382 4.7083 36 1 3.0253 -0.2081 6.7813 37 1 2.9159 -1.7295 8.7125 38 1 0.9274 -3.1386 9.0613 39 1 4.0066 0.1464 1.1000 40 1 3.9372 -1.3460 2.0672 41 1 5.0411 -1.7708 -0.1030 42 1 3.4978 -2.6533 -0.0052 43 1 3.9915 0.0015 -1.4310 44 1 3.6525 -1.5719 -2.1968 45 1 1.2134 -2.0267 -5.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993888280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:44 Heat of formation + Delta-G solvation = -101.821623 kcal Electronic energy + Delta-G solvation = -29724.434702 eV Core-core repulsion = 25377.447995 eV Total energy + Delta-G solvation = -4346.986707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.52052 -49.61708 -41.24347 -40.01437 -39.13549 -35.93928 -34.46099 -33.91363 -33.48918 -31.66956 -31.26399 -28.98096 -27.75900 -26.71137 -24.51688 -23.81873 -23.15864 -22.40802 -21.44818 -21.09571 -18.94947 -18.48857 -18.34591 -18.13430 -17.93484 -17.43148 -17.24340 -16.77894 -16.20046 -16.13810 -16.02073 -15.72917 -15.46192 -15.29381 -15.14038 -15.07061 -14.80240 -14.43134 -14.28649 -14.01361 -13.67197 -13.51802 -13.16287 -13.00368 -12.94748 -12.91770 -12.65657 -12.57085 -12.45350 -12.21314 -12.04949 -11.89030 -11.63759 -11.44490 -11.31062 -10.99369 -10.68350 -10.01068 -9.89119 -9.72169 -8.91165 -8.12828 -5.47447 -0.03581 -0.01956 1.32891 1.42875 1.52437 1.68317 2.10337 2.44892 2.51214 2.83195 3.07771 3.29546 3.32925 3.46988 3.77893 3.81877 3.91006 3.96061 4.03433 4.09039 4.21239 4.22787 4.36237 4.39140 4.50151 4.53881 4.65473 4.70490 4.83536 4.86102 4.89548 4.90285 5.01259 5.02196 5.03354 5.16648 5.18525 5.23801 5.29330 5.36586 5.43499 5.60994 5.79809 5.90112 6.18914 6.63075 6.92390 7.33590 7.64475 8.02416 9.06683 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002660 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.668796 B =10523.323178 C =11035.316201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.168 3.832 3 H 0.063 0.937 4 C 0.143 3.857 5 H 0.045 0.955 6 N -0.705 5.705 7 C 0.511 3.489 8 O -0.583 6.583 9 C -0.097 4.097 10 C -0.084 4.084 11 C -0.086 4.086 12 C -0.090 4.090 13 C -0.126 4.126 14 C 0.034 3.966 15 F -0.147 7.147 16 C 0.047 3.953 17 F -0.147 7.147 18 C -0.108 4.108 19 C -0.127 4.127 20 C 0.118 3.882 21 N -0.614 5.614 22 C -0.243 4.243 23 H 0.058 0.942 24 C -0.039 4.039 25 N -0.962 5.962 26 Si 0.948 3.052 27 H -0.280 1.280 28 H -0.316 1.316 29 H -0.249 1.249 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.025 0.975 33 H 0.417 0.583 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.167 0.833 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 9.621 28.745 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.062 3.938 3 H 0.080 0.920 4 C 0.036 3.964 5 H 0.063 0.937 6 N -0.358 5.358 7 C 0.299 3.701 8 O -0.462 6.462 9 C -0.136 4.136 10 C -0.085 4.085 11 C -0.103 4.103 12 C -0.108 4.108 13 C -0.144 4.144 14 C 0.014 3.986 15 F -0.126 7.126 16 C 0.027 3.973 17 F -0.126 7.126 18 C -0.146 4.146 19 C -0.167 4.167 20 C -0.007 4.007 21 N -0.339 5.339 22 C -0.372 4.372 23 H 0.076 0.924 24 C -0.233 4.233 25 N -0.609 5.609 26 Si 0.777 3.223 27 H -0.207 1.207 28 H -0.245 1.245 29 H -0.173 1.173 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.255 0.745 34 H 0.177 0.823 35 H 0.139 0.861 36 H 0.192 0.808 37 H 0.198 0.802 38 H 0.185 0.815 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.914 8.723 28.617 30.706 hybrid contribution -0.658 -0.292 -1.470 1.637 sum 6.256 8.432 27.147 29.107 Atomic orbital electron populations 1.21749 0.95013 1.00479 1.01497 1.20800 0.93930 0.94341 0.84705 0.91984 1.21249 0.95364 0.95269 0.84490 0.93653 1.45824 1.70084 1.12929 1.06922 1.21047 0.76054 0.87728 0.85303 1.90733 1.51815 1.17359 1.86343 1.20730 1.07417 0.97677 0.87740 1.19567 0.92789 0.98009 0.98165 1.21502 0.97324 0.98763 0.92738 1.21554 0.97682 0.93554 0.97992 1.21475 0.91999 1.01635 0.99312 1.18130 0.87149 0.95100 0.98243 1.91474 1.52782 1.73324 1.95034 1.18012 0.87823 1.01376 0.90082 1.91464 1.57165 1.95443 1.68546 1.21689 0.94700 1.01035 0.97210 1.21922 1.01103 0.98662 0.95025 1.21489 0.84169 0.97837 0.97199 1.44491 1.02558 1.66742 1.20093 1.18837 0.94845 1.36718 0.86838 0.92445 1.25946 1.01384 0.99932 0.96020 1.69975 1.44058 1.41619 1.05234 0.85872 0.79963 0.80481 0.75940 1.20686 1.24493 1.17293 0.90107 0.93227 0.95561 0.74523 0.82287 0.86138 0.80765 0.80202 0.81520 0.89833 0.92076 0.89489 0.94094 0.93599 0.93521 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.83 71.98 0.56 -4.12 16 2 C 0.17 6.00 3.03 44.97 0.14 6.13 16 3 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.14 4.57 1.99 45.07 0.09 4.66 16 5 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 6 N -0.71 -15.93 4.57 -442.18 -2.02 -17.96 16 7 C 0.51 12.52 7.78 87.66 0.68 13.20 16 8 O -0.58 -20.62 15.62 -3.04 -0.05 -20.67 16 9 C -0.10 -1.39 5.56 29.10 0.16 -1.23 16 10 C -0.08 -1.53 4.42 -19.83 -0.09 -1.62 16 11 C -0.09 -0.98 9.67 22.27 0.22 -0.77 16 12 C -0.09 -0.88 10.04 22.27 0.22 -0.66 16 13 C -0.13 -1.84 10.02 22.31 0.22 -1.62 16 14 C 0.03 0.78 7.31 22.41 0.16 0.94 16 15 F -0.15 -3.95 17.18 44.97 0.77 -3.18 16 16 C 0.05 1.18 7.14 22.41 0.16 1.34 16 17 F -0.15 -4.47 16.57 44.97 0.75 -3.73 16 18 C -0.11 -3.14 5.46 30.62 0.17 -2.97 16 19 C -0.13 -4.35 6.08 30.67 0.19 -4.16 16 20 C 0.12 4.83 4.19 86.36 0.36 5.19 16 21 N -0.61 -28.01 2.76 -675.20 -1.86 -29.87 16 22 C -0.24 -13.61 9.07 84.03 0.76 -12.84 16 23 H 0.06 3.54 6.36 -2.91 -0.02 3.52 16 24 C -0.04 -2.27 5.24 84.86 0.45 -1.82 16 25 N -0.96 -61.30 13.97 21.65 0.30 -60.99 16 26 Si 0.95 46.00 24.35 68.60 1.67 47.67 16 27 H -0.28 -13.00 6.72 99.48 0.67 -12.33 16 28 H -0.32 -15.75 7.11 99.48 0.71 -15.05 16 29 H -0.25 -11.09 6.44 99.48 0.64 -10.45 16 30 H 0.08 2.22 7.78 -2.39 -0.02 2.20 16 31 H 0.05 1.94 7.65 -2.39 -0.02 1.92 16 32 H 0.03 1.09 7.41 -2.39 -0.02 1.07 16 33 H 0.42 6.13 8.60 -92.71 -0.80 5.33 16 34 H 0.16 0.75 8.00 -2.39 -0.02 0.74 16 35 H 0.12 1.49 7.94 -2.39 -0.02 1.47 16 36 H 0.17 0.74 8.04 -2.91 -0.02 0.71 16 37 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.73 6.95 -2.39 -0.02 1.72 16 44 H 0.05 2.16 4.61 -2.39 -0.01 2.15 16 45 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -81.88 366.21 4.14 -77.74 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.12 Total: 11.33 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.46 Total: -0.34 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -3.58 Total: -108.83 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 1.52 Total: -6.91 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -81.88 4.14 -77.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993888280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.078 kcal (2) G-P(sol) polarization free energy of solvation -81.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds