Wall clock time and date at job start Tue Mar 31 2020 21:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99351 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21567 * 120.00056 * 0.02562 * 5 4 2 7 7 C 1.47728 * 120.00075 * 179.97438 * 5 4 2 8 8 C 1.39649 * 120.10789 * 359.73510 * 7 5 4 9 9 C 1.37854 * 119.92318 * 179.69455 * 8 7 5 10 10 C 1.38607 * 120.14756 * 0.57675 * 9 8 7 11 11 F 1.35103 * 119.88794 * 179.69959 * 10 9 8 12 12 C 1.38831 * 120.21981 * 359.71858 * 10 9 8 13 13 F 1.35102 * 119.96331 * 180.02562 * 12 10 9 14 14 C 1.38056 * 120.07296 * 359.97370 * 12 10 9 15 15 C 1.52997 * 109.47441 * 239.99838 * 2 1 3 16 16 C 1.53041 * 109.46332 * 180.02562 * 15 2 1 17 17 C 1.53190 * 109.31361 * 178.60104 * 16 15 2 18 18 N 1.46924 * 108.76422 * 54.65229 * 17 16 15 19 19 C 1.36938 * 120.62707 * 126.40600 * 18 17 16 20 20 H 1.07997 * 120.00548 * 331.82331 * 19 18 17 21 21 C 1.38818 * 119.99900 * 151.82191 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07628 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.07248 * 21 19 18 24 24 H 1.48504 * 109.47271 * 90.00439 * 23 21 19 25 25 H 1.48498 * 109.47246 * 210.00631 * 23 21 19 26 26 H 1.48500 * 109.47104 * 330.00259 * 23 21 19 27 27 C 1.46921 * 118.74105 * 306.38135 * 18 17 16 28 28 C 1.53043 * 109.45889 * 59.96913 * 15 2 1 29 29 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47535 * 60.00571 * 1 2 3 31 31 H 1.09002 * 109.47304 * 299.99807 * 1 2 3 32 32 H 0.97002 * 119.99587 * 95.00574 * 4 2 1 33 33 H 1.08003 * 120.03876 * 359.96310 * 8 7 5 34 34 H 1.08001 * 119.92388 * 180.26906 * 9 8 7 35 35 H 1.08005 * 120.07467 * 180.02562 * 14 12 10 36 36 H 1.08998 * 109.45946 * 299.99944 * 15 2 1 37 37 H 1.09006 * 109.49033 * 298.56713 * 16 15 2 38 38 H 1.09004 * 109.49907 * 58.65693 * 16 15 2 39 39 H 1.09003 * 109.59716 * 294.86739 * 17 16 15 40 40 H 1.08999 * 109.70155 * 174.50222 * 17 16 15 41 41 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.59222 * 293.82594 * 27 18 17 43 43 H 1.09006 * 109.70406 * 173.46617 * 27 18 17 44 44 H 1.08996 * 109.49606 * 301.33993 * 28 15 2 45 45 H 1.08999 * 109.49655 * 61.40257 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8575 1.1613 2.4118 7 6 2.6389 -0.7145 3.5635 8 6 2.9660 -2.0709 3.5050 9 6 3.4306 -2.7155 4.6315 10 6 3.5626 -2.0232 5.8250 11 9 4.0127 -2.6617 6.9273 12 6 3.2334 -0.6762 5.8916 13 9 3.3646 -0.0063 7.0576 14 6 2.7732 -0.0201 4.7675 15 6 2.0401 -0.7213 -1.2492 16 6 3.5705 -0.7217 -1.2486 17 6 4.0774 -1.4748 -2.4825 18 7 3.4748 -0.8771 -3.6817 19 6 4.2607 -0.4516 -4.7193 20 1 5.2718 -0.1221 -4.5310 21 6 3.7578 -0.4439 -6.0131 22 7 2.6779 -1.1381 -6.3035 23 14 4.6135 0.5517 -7.3419 24 1 5.6370 -0.2914 -8.0104 25 1 3.6140 1.0038 -8.3427 26 1 5.2699 1.7344 -6.7289 27 6 2.0130 -0.7449 -3.7468 28 6 1.5292 -0.0001 -2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 2.8591 -2.6132 2.5772 34 1 3.6876 -3.7634 4.5851 35 1 2.5175 1.0280 4.8191 36 1 1.6767 -1.7489 -1.2490 37 1 3.9344 0.3055 -1.2740 38 1 3.9338 -1.2146 -0.3469 39 1 3.7905 -2.5242 -2.4137 40 1 5.1629 -1.3959 -2.5409 41 1 2.3263 -1.1324 -7.2075 42 1 1.5577 -1.7347 -3.7811 43 1 1.7341 -0.1833 -4.6385 44 1 0.4395 0.0205 -2.4867 45 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997136219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:00 Heat of formation + Delta-G solvation = -86.990494 kcal Electronic energy + Delta-G solvation = -28960.952749 eV Core-core repulsion = 24614.609168 eV Total energy + Delta-G solvation = -4346.343581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.93219 -48.99937 -40.60356 -38.83212 -37.79137 -35.45951 -33.11154 -31.81435 -31.52078 -30.65310 -29.71011 -29.00642 -25.54046 -24.68733 -23.63308 -22.94998 -22.07365 -21.02975 -20.57793 -19.32628 -18.70267 -17.98082 -17.56772 -16.79203 -16.78220 -16.57498 -15.96656 -15.40863 -15.17225 -14.95918 -14.90778 -14.58166 -14.41285 -14.10629 -13.63917 -13.49968 -13.43017 -13.37246 -13.12950 -12.96175 -12.53578 -12.38228 -12.26666 -11.87323 -11.84353 -11.42503 -11.17415 -11.02154 -10.71943 -10.47866 -10.31570 -10.21249 -10.17570 -9.92392 -9.67366 -9.60228 -9.49234 -9.31934 -9.05261 -8.48749 -6.68633 -5.81191 -3.23273 0.03001 0.45284 2.28583 2.84844 3.21594 3.24492 3.35869 3.43285 3.45893 3.83286 3.99758 4.23645 4.33623 4.48211 4.53534 4.85476 5.09964 5.15558 5.23482 5.28162 5.29089 5.35769 5.39011 5.48203 5.56005 5.61784 5.66137 5.80487 5.89114 6.02364 6.10873 6.13155 6.21415 6.28587 6.37523 6.44714 6.57549 6.66873 6.72747 6.80508 6.95007 7.29925 7.36811 7.63269 7.77848 7.98991 8.43446 9.19788 9.83249 10.39667 11.27339 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002198 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.545257 B =12734.614311 C =13181.651341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.558 3.442 6 O -0.532 6.532 7 C -0.111 4.111 8 C -0.067 4.067 9 C -0.130 4.130 10 C 0.089 3.911 11 F -0.124 7.124 12 C 0.062 3.938 13 F -0.124 7.124 14 C -0.068 4.068 15 C -0.084 4.084 16 C -0.126 4.126 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.399 0.601 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.015 0.985 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 -3.524 22.053 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.344 3.656 6 O -0.409 6.409 7 C -0.115 4.115 8 C -0.085 4.085 9 C -0.149 4.149 10 C 0.069 3.931 11 F -0.102 7.102 12 C 0.041 3.959 13 F -0.103 7.103 14 C -0.088 4.088 15 C -0.103 4.103 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.751 -2.683 21.971 22.304 hybrid contribution 0.642 -0.078 -0.264 0.698 sum -2.109 -2.761 21.706 21.983 Atomic orbital electron populations 1.22208 0.95286 1.02072 1.02532 1.21254 0.93882 0.97687 0.83146 0.89317 1.46058 1.66372 1.14069 1.09622 1.17952 0.78178 0.86551 0.82917 1.90807 1.50035 1.15280 1.84823 1.19939 1.03118 0.94121 0.94314 1.21308 0.95355 0.93144 0.98737 1.21053 1.01665 1.01717 0.90452 1.17947 1.00957 0.89499 0.84713 1.91561 1.86307 1.81355 1.51021 1.17508 1.05657 0.89210 0.83486 1.91564 1.93752 1.79816 1.45155 1.21188 0.96134 1.01967 0.89522 1.21348 0.96462 0.99312 0.93202 1.22057 0.94457 1.01485 0.98584 1.20883 0.96571 0.93847 0.86767 1.44041 1.02038 1.69876 1.15522 1.19165 0.97236 1.36167 0.85591 0.91819 1.25034 0.98404 0.99141 0.97061 1.70025 1.24558 1.40930 1.19265 0.86325 0.78691 0.80253 0.81686 1.21416 1.21545 1.20492 1.20762 0.83274 0.96807 0.94576 1.22272 0.98895 1.00127 0.96046 0.92565 0.90776 0.92655 0.76581 0.83560 0.82780 0.82226 0.91412 0.92259 0.93462 0.96688 0.92947 0.93651 0.96500 0.89451 0.92733 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.13 37.16 0.34 -1.56 16 2 C 0.14 1.81 2.16 -67.93 -0.15 1.66 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.71 -7.36 4.31 -54.79 -0.24 -7.60 16 5 C 0.56 6.47 7.73 -12.38 -0.10 6.38 16 6 O -0.53 -8.12 16.01 5.31 0.08 -8.03 16 7 C -0.11 -1.01 5.87 -104.97 -0.62 -1.62 16 8 C -0.07 -0.43 9.53 -39.20 -0.37 -0.80 16 9 C -0.13 -0.81 10.01 -39.59 -0.40 -1.20 16 10 C 0.09 0.75 7.31 -39.23 -0.29 0.46 16 11 F -0.12 -1.15 17.18 2.25 0.04 -1.11 16 12 C 0.06 0.57 7.30 -39.43 -0.29 0.28 16 13 F -0.12 -1.29 17.18 2.25 0.04 -1.25 16 14 C -0.07 -0.64 9.57 -39.13 -0.37 -1.01 16 15 C -0.08 -1.21 1.79 -90.58 -0.16 -1.37 16 16 C -0.13 -1.97 5.22 -26.61 -0.14 -2.11 16 17 C 0.15 2.85 6.52 -3.71 -0.02 2.83 16 18 N -0.59 -14.22 2.99 -172.32 -0.52 -14.73 16 19 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 20 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 23 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 28 C -0.13 -2.32 5.04 -26.61 -0.13 -2.45 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.87 6.40 -51.93 -0.33 0.54 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 3.10 6.41 -40.82 -0.26 2.83 16 33 H 0.15 0.58 6.40 -52.48 -0.34 0.24 16 34 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.16 1.50 7.65 -52.48 -0.40 1.10 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.25 6.07 -51.93 -0.31 1.93 16 44 H 0.05 0.84 6.36 -51.93 -0.33 0.51 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 370.19 15.07 5.58 5.58 Total: -1.00 -31.06 370.19 -8.46 -39.52 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.10 Total: -0.09 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.95 Total: -3.61 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.13 Total: -47.37 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.06 -8.46 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997136219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.467 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds