Wall clock time and date at job start Tue Mar 31 2020 21:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99351 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21567 * 120.00056 * 0.02562 * 5 4 2 7 7 C 1.47728 * 120.00075 * 179.97438 * 5 4 2 8 8 C 1.39649 * 120.10789 * 359.73510 * 7 5 4 9 9 C 1.37854 * 119.92318 * 179.69455 * 8 7 5 10 10 C 1.38607 * 120.14756 * 0.57675 * 9 8 7 11 11 F 1.35103 * 119.88794 * 179.69959 * 10 9 8 12 12 C 1.38831 * 120.21981 * 359.71858 * 10 9 8 13 13 F 1.35102 * 119.96331 * 180.02562 * 12 10 9 14 14 C 1.38056 * 120.07296 * 359.97370 * 12 10 9 15 15 C 1.52997 * 109.47441 * 239.99838 * 2 1 3 16 16 C 1.53041 * 109.46332 * 180.02562 * 15 2 1 17 17 C 1.53190 * 109.31361 * 178.60104 * 16 15 2 18 18 N 1.46924 * 108.76422 * 54.65229 * 17 16 15 19 19 C 1.36938 * 120.62707 * 126.40600 * 18 17 16 20 20 H 1.07997 * 120.00548 * 331.82331 * 19 18 17 21 21 C 1.38818 * 119.99900 * 151.82191 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07628 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.07248 * 21 19 18 24 24 H 1.48504 * 109.47271 * 90.00439 * 23 21 19 25 25 H 1.48498 * 109.47246 * 210.00631 * 23 21 19 26 26 H 1.48500 * 109.47104 * 330.00259 * 23 21 19 27 27 C 1.46921 * 118.74105 * 306.38135 * 18 17 16 28 28 C 1.53043 * 109.45889 * 59.96913 * 15 2 1 29 29 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47535 * 60.00571 * 1 2 3 31 31 H 1.09002 * 109.47304 * 299.99807 * 1 2 3 32 32 H 0.97002 * 119.99587 * 95.00574 * 4 2 1 33 33 H 1.08003 * 120.03876 * 359.96310 * 8 7 5 34 34 H 1.08001 * 119.92388 * 180.26906 * 9 8 7 35 35 H 1.08005 * 120.07467 * 180.02562 * 14 12 10 36 36 H 1.08998 * 109.45946 * 299.99944 * 15 2 1 37 37 H 1.09006 * 109.49033 * 298.56713 * 16 15 2 38 38 H 1.09004 * 109.49907 * 58.65693 * 16 15 2 39 39 H 1.09003 * 109.59716 * 294.86739 * 17 16 15 40 40 H 1.08999 * 109.70155 * 174.50222 * 17 16 15 41 41 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.59222 * 293.82594 * 27 18 17 43 43 H 1.09006 * 109.70406 * 173.46617 * 27 18 17 44 44 H 1.08996 * 109.49606 * 301.33993 * 28 15 2 45 45 H 1.08999 * 109.49655 * 61.40257 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8575 1.1613 2.4118 7 6 2.6389 -0.7145 3.5635 8 6 2.9660 -2.0709 3.5050 9 6 3.4306 -2.7155 4.6315 10 6 3.5626 -2.0232 5.8250 11 9 4.0127 -2.6617 6.9273 12 6 3.2334 -0.6762 5.8916 13 9 3.3646 -0.0063 7.0576 14 6 2.7732 -0.0201 4.7675 15 6 2.0401 -0.7213 -1.2492 16 6 3.5705 -0.7217 -1.2486 17 6 4.0774 -1.4748 -2.4825 18 7 3.4748 -0.8771 -3.6817 19 6 4.2607 -0.4516 -4.7193 20 1 5.2718 -0.1221 -4.5310 21 6 3.7578 -0.4439 -6.0131 22 7 2.6779 -1.1381 -6.3035 23 14 4.6135 0.5517 -7.3419 24 1 5.6370 -0.2914 -8.0104 25 1 3.6140 1.0038 -8.3427 26 1 5.2699 1.7344 -6.7289 27 6 2.0130 -0.7449 -3.7468 28 6 1.5292 -0.0001 -2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 2.8591 -2.6132 2.5772 34 1 3.6876 -3.7634 4.5851 35 1 2.5175 1.0280 4.8191 36 1 1.6767 -1.7489 -1.2490 37 1 3.9344 0.3055 -1.2740 38 1 3.9338 -1.2146 -0.3469 39 1 3.7905 -2.5242 -2.4137 40 1 5.1629 -1.3959 -2.5409 41 1 2.3263 -1.1324 -7.2075 42 1 1.5577 -1.7347 -3.7811 43 1 1.7341 -0.1833 -4.6385 44 1 0.4395 0.0205 -2.4867 45 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997136219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:59 Heat of formation + Delta-G solvation = -104.342761 kcal Electronic energy + Delta-G solvation = -28961.705199 eV Core-core repulsion = 24614.609168 eV Total energy + Delta-G solvation = -4347.096032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.62575 -49.70380 -41.47073 -39.82179 -38.92031 -36.81634 -34.58066 -33.15359 -32.16446 -31.70348 -31.29595 -30.18487 -27.14321 -25.66140 -24.32710 -24.19744 -23.60255 -22.16654 -21.57945 -20.74290 -19.54133 -18.81205 -18.50731 -18.25225 -17.47485 -17.41079 -16.93153 -16.77243 -16.14415 -16.07328 -15.76913 -15.62120 -15.31845 -15.26586 -15.13962 -14.84927 -14.75067 -14.35837 -14.13791 -13.98519 -13.75270 -13.53444 -13.35957 -13.13452 -12.88105 -12.71618 -12.59370 -12.46978 -12.36332 -12.13871 -12.00226 -11.75146 -11.44889 -11.31291 -11.05245 -10.97592 -10.50687 -10.29270 -10.14928 -9.87028 -8.62704 -7.85503 -5.29391 -0.63104 -0.13674 1.45925 1.48351 1.54791 1.57199 1.98792 2.48792 2.52540 2.62079 3.18775 3.28893 3.41858 3.51355 3.71885 3.77751 3.81867 3.91904 4.00086 4.11103 4.45259 4.47517 4.54774 4.60675 4.61143 4.64848 4.75591 4.77312 4.82761 4.88519 4.94766 4.96426 5.04494 5.08948 5.16603 5.23104 5.33234 5.41316 5.48420 5.50938 5.54500 5.59836 5.69416 5.84854 6.42596 6.50570 7.15304 7.18948 7.92123 8.41451 9.20216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002198 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.545257 B =12734.614311 C =13181.651341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.065 0.935 4 N -0.698 5.698 5 C 0.560 3.440 6 O -0.575 6.575 7 C -0.121 4.121 8 C -0.048 4.048 9 C -0.115 4.115 10 C 0.085 3.915 11 F -0.131 7.131 12 C 0.045 3.955 13 F -0.137 7.137 14 C -0.075 4.075 15 C -0.073 4.073 16 C -0.115 4.115 17 C 0.141 3.859 18 N -0.613 5.613 19 C -0.261 4.261 20 H 0.061 0.939 21 C -0.050 4.050 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.274 1.274 27 C 0.177 3.823 28 C -0.122 4.122 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.415 0.585 33 H 0.181 0.819 34 H 0.189 0.811 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.002 0.998 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -5.276 23.260 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.083 0.917 4 N -0.350 5.350 5 C 0.348 3.652 6 O -0.456 6.456 7 C -0.124 4.124 8 C -0.067 4.067 9 C -0.133 4.133 10 C 0.064 3.936 11 F -0.109 7.109 12 C 0.025 3.975 13 F -0.116 7.116 14 C -0.095 4.095 15 C -0.092 4.092 16 C -0.154 4.154 17 C 0.015 3.985 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.789 3.211 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.200 1.200 27 C 0.051 3.949 28 C -0.162 4.162 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.254 0.746 33 H 0.198 0.802 34 H 0.206 0.794 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.481 -4.467 23.209 23.765 hybrid contribution 0.596 0.417 -0.605 0.946 sum -1.886 -4.050 22.604 23.041 Atomic orbital electron populations 1.22162 0.94266 1.03112 1.02139 1.20904 0.94532 0.96347 0.83068 0.91660 1.45844 1.65879 1.14724 1.08545 1.18258 0.77331 0.86038 0.83603 1.90795 1.51958 1.17327 1.85497 1.19758 1.04486 0.95292 0.92887 1.21633 0.93229 0.91732 1.00082 1.21406 0.99911 1.02991 0.89005 1.18198 1.00884 0.89142 0.85358 1.91547 1.86416 1.81332 1.51623 1.17632 1.06872 0.89865 0.83122 1.91526 1.94000 1.80231 1.45820 1.21113 0.96657 1.01725 0.90020 1.21201 0.95556 0.99943 0.92467 1.21917 0.95172 1.00173 0.98090 1.21067 0.96297 0.94498 0.86589 1.44330 1.02498 1.70581 1.16227 1.19460 0.97452 1.35586 0.86654 0.92114 1.25716 0.99374 1.00403 0.99007 1.70160 1.25982 1.42427 1.19290 0.85382 0.77578 0.78970 0.79161 1.21113 1.21865 1.19952 1.20583 0.82852 0.95936 0.95512 1.22068 1.00182 0.98779 0.95132 0.90756 0.91062 0.93230 0.74585 0.80201 0.79426 0.83346 0.89667 0.94058 0.89559 0.95924 0.93480 0.94160 0.97987 0.93350 0.90546 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.13 71.98 0.66 -2.64 16 2 C 0.16 3.55 2.16 44.99 0.10 3.64 16 3 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 4 N -0.70 -12.11 4.31 -445.52 -1.92 -14.03 16 5 C 0.56 11.86 7.73 86.75 0.67 12.54 16 6 O -0.58 -17.32 16.01 -3.93 -0.06 -17.38 16 7 C -0.12 -1.90 5.87 -20.09 -0.12 -2.02 16 8 C -0.05 -0.40 9.53 22.52 0.21 -0.19 16 9 C -0.11 -0.94 10.01 22.27 0.22 -0.71 16 10 C 0.08 1.23 7.31 22.50 0.16 1.39 16 11 F -0.13 -2.19 17.18 44.97 0.77 -1.42 16 12 C 0.05 0.81 7.30 22.37 0.16 0.97 16 13 F -0.14 -2.88 17.18 44.97 0.77 -2.10 16 14 C -0.08 -1.36 9.57 22.56 0.22 -1.14 16 15 C -0.07 -1.90 1.79 -10.77 -0.02 -1.92 16 16 C -0.11 -3.28 5.22 30.67 0.16 -3.12 16 17 C 0.14 5.30 6.52 86.36 0.56 5.86 16 18 N -0.61 -29.49 2.99 -699.10 -2.09 -31.58 16 19 C -0.26 -14.17 9.58 84.03 0.81 -13.37 16 20 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 21 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 22 N -0.93 -54.18 11.19 21.65 0.24 -53.94 16 23 Si 0.96 44.61 29.59 68.60 2.03 46.64 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 C 0.18 8.04 5.30 86.36 0.46 8.50 16 28 C -0.12 -4.12 5.04 30.67 0.15 -3.97 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.52 6.40 -2.39 -0.02 1.51 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.42 4.32 6.41 -92.71 -0.59 3.73 16 33 H 0.18 0.28 6.40 -2.91 -0.02 0.26 16 34 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.15 2.93 7.65 -2.91 -0.02 2.90 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.09 1.82 7.41 -2.38 -0.02 1.80 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 41 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.05 2.56 6.07 -2.38 -0.01 2.55 16 44 H 0.08 2.24 6.36 -2.39 -0.02 2.22 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.59 370.19 5.00 -65.59 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.43 Total: 6.72 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 4.83 Total: 1.50 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.77 Total: -99.55 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.06 Total: -17.38 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.54 Total: -3.52 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.59 5.00 -65.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997136219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.751 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds