Wall clock time and date at job start Tue Mar 31 2020 21:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46768 * 2 1 4 4 N 1.46500 * 109.46926 * 119.99684 * 2 1 3 5 5 C 1.34770 * 120.00150 * 275.00159 * 4 2 1 6 6 O 1.21576 * 120.00384 * 0.02562 * 5 4 2 7 7 C 1.47697 * 120.00241 * 180.02562 * 5 4 2 8 8 C 1.39683 * 120.15243 * 359.72426 * 7 5 4 9 9 C 1.37851 * 119.92476 * 179.74572 * 8 7 5 10 10 C 1.38454 * 120.23914 * 0.55553 * 9 8 7 11 11 C 1.38384 * 120.31168 * 359.69667 * 10 9 8 12 12 F 1.35097 * 119.95896 * 180.02562 * 11 10 9 13 13 C 1.38543 * 120.07419 * 0.02612 * 11 10 9 14 14 F 1.35097 * 120.12096 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47422 * 239.99932 * 2 1 3 16 16 C 1.53037 * 109.46088 * 180.02562 * 15 2 1 17 17 C 1.53191 * 109.31054 * 178.59928 * 16 15 2 18 18 N 1.46919 * 108.76476 * 54.66210 * 17 16 15 19 19 C 1.36939 * 120.63336 * 126.40499 * 18 17 16 20 20 H 1.08001 * 119.99678 * 331.82343 * 19 18 17 21 21 C 1.38816 * 120.00216 * 151.82742 * 19 18 17 22 22 N 1.31623 * 119.99795 * 343.06820 * 21 19 18 23 23 Si 1.86794 * 120.00105 * 163.06533 * 21 19 18 24 24 H 1.48499 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46859 * 120.00066 * 23 21 19 26 26 H 1.48491 * 109.47334 * 239.99710 * 23 21 19 27 27 C 1.46933 * 118.73668 * 306.37915 * 18 17 16 28 28 C 1.53039 * 109.45956 * 59.97111 * 15 2 1 29 29 H 1.09005 * 109.46768 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47207 * 299.99911 * 1 2 3 31 31 H 1.08997 * 109.46984 * 60.00187 * 1 2 3 32 32 H 0.97003 * 120.00015 * 95.00472 * 4 2 1 33 33 H 1.07999 * 120.03898 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.88040 * 180.27004 * 9 8 7 35 35 H 1.07998 * 119.83897 * 179.71994 * 10 9 8 36 36 H 1.09004 * 109.45647 * 300.00046 * 15 2 1 37 37 H 1.08998 * 109.49636 * 298.56931 * 16 15 2 38 38 H 1.09003 * 109.49565 * 58.66663 * 16 15 2 39 39 H 1.08995 * 109.60151 * 294.86758 * 17 16 15 40 40 H 1.09001 * 109.69700 * 174.50878 * 17 16 15 41 41 H 0.96999 * 119.99705 * 180.02562 * 22 21 19 42 42 H 1.09002 * 109.58500 * 293.81916 * 27 18 17 43 43 H 1.09001 * 109.70245 * 173.46706 * 27 18 17 44 44 H 1.09006 * 109.49940 * 301.33690 * 28 15 2 45 45 H 1.09001 * 109.50024 * 61.42991 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8574 1.1613 2.4119 7 6 2.6398 -0.7142 3.5630 8 6 2.9680 -2.0707 3.5053 9 6 3.4325 -2.7145 4.6323 10 6 3.5643 -2.0241 5.8251 11 6 3.2371 -0.6813 5.8948 12 9 3.3689 -0.0144 7.0623 13 6 2.7744 -0.0201 4.7686 14 9 2.4552 1.2909 4.8354 15 6 2.0401 -0.7212 -1.2492 16 6 3.5705 -0.7216 -1.2486 17 6 4.0774 -1.4748 -2.4825 18 7 3.4750 -0.8769 -3.6817 19 6 4.2609 -0.4515 -4.7192 20 1 5.2721 -0.1221 -4.5308 21 6 3.7580 -0.4436 -6.0131 22 7 2.6781 -1.1377 -6.3036 23 14 4.6138 0.5523 -7.3417 24 1 5.7970 1.2374 -6.7621 25 1 5.0525 -0.3534 -8.4338 26 1 3.6727 1.5638 -7.8857 27 6 2.0131 -0.7447 -3.7468 28 6 1.5293 -0.0001 -2.4986 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1527 33 1 2.8622 -2.6135 2.5776 34 1 3.6902 -3.7622 4.5857 35 1 3.9246 -2.5359 6.7053 36 1 1.6766 -1.7489 -1.2490 37 1 3.9345 0.3055 -1.2739 38 1 3.9338 -1.2148 -0.3469 39 1 3.7905 -2.5241 -2.4138 40 1 5.1630 -1.3959 -2.5408 41 1 2.3269 -1.1324 -7.2078 42 1 1.5578 -1.7345 -3.7813 43 1 1.7343 -0.1830 -4.6384 44 1 0.4395 0.0205 -2.4868 45 1 1.9127 1.0202 -2.5121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997276482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:08 Heat of formation + Delta-G solvation = -84.095177 kcal Electronic energy + Delta-G solvation = -29323.486217 eV Core-core repulsion = 24977.268186 eV Total energy + Delta-G solvation = -4346.218031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.78565 -48.83123 -40.45037 -38.85781 -37.82064 -35.41031 -33.12525 -32.00457 -31.05041 -30.72705 -29.70848 -29.02354 -25.55193 -24.88334 -23.35255 -22.87101 -22.06108 -21.06969 -20.53526 -19.30872 -18.65584 -17.70715 -17.52946 -16.82623 -16.71405 -16.49831 -15.88049 -15.33970 -15.31410 -14.94994 -14.83453 -14.65056 -14.22084 -14.01702 -13.60683 -13.41607 -13.40351 -13.34627 -12.98677 -12.55767 -12.51406 -12.36772 -12.24875 -12.14403 -11.85142 -11.40153 -11.15472 -11.00604 -10.73630 -10.45236 -10.25090 -10.18667 -10.10524 -9.91066 -9.64626 -9.56189 -9.47066 -9.23396 -9.03504 -8.48233 -6.67833 -5.80255 -3.22449 0.09085 0.43175 2.38970 2.81872 3.20242 3.36148 3.36487 3.44695 3.46872 3.91074 4.07771 4.15715 4.33141 4.48997 4.55597 4.88108 5.09898 5.17174 5.19838 5.30260 5.36833 5.38716 5.41306 5.49953 5.60058 5.63825 5.68592 5.83015 5.91572 6.04495 6.13011 6.17140 6.24090 6.30071 6.40187 6.46909 6.59051 6.68774 6.74265 6.82103 6.96446 7.32057 7.38713 7.64544 7.79155 8.03537 8.44365 9.20689 9.84126 10.40565 11.28243 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.002326 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.018972 B =12035.127299 C =12318.484297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.088 0.912 4 N -0.710 5.710 5 C 0.555 3.445 6 O -0.522 6.522 7 C -0.142 4.142 8 C -0.067 4.067 9 C -0.108 4.108 10 C -0.103 4.103 11 C 0.057 3.943 12 F -0.125 7.125 13 C 0.126 3.874 14 F -0.103 7.103 15 C -0.084 4.084 16 C -0.127 4.127 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.398 0.602 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.015 0.985 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -5.499 23.239 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.106 0.894 4 N -0.361 5.361 5 C 0.341 3.659 6 O -0.398 6.398 7 C -0.146 4.146 8 C -0.086 4.086 9 C -0.126 4.126 10 C -0.122 4.122 11 C 0.036 3.964 12 F -0.104 7.104 13 C 0.104 3.896 14 F -0.081 7.081 15 C -0.103 4.103 16 C -0.166 4.166 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.215 1.215 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.941 -4.562 23.120 23.645 hybrid contribution 0.472 0.323 -0.456 0.731 sum -1.470 -4.240 22.663 23.103 Atomic orbital electron populations 1.22208 0.95308 1.02042 1.02531 1.21249 0.93875 0.97693 0.83093 0.89353 1.46011 1.66633 1.13993 1.09481 1.17833 0.78613 0.86614 0.82869 1.90864 1.49324 1.14987 1.84636 1.20085 1.06006 0.95108 0.93434 1.21370 0.95413 0.92064 0.99769 1.21060 0.99141 1.01113 0.91262 1.21306 0.99103 0.91409 1.00351 1.17590 1.05814 0.91561 0.81411 1.91557 1.93757 1.80370 1.44693 1.17690 0.99525 0.79604 0.92749 1.91638 1.89330 1.30552 1.96564 1.21344 0.96453 0.99296 0.93185 1.22056 0.94472 1.01490 0.98570 1.20880 0.96562 0.93841 0.86753 1.44055 1.02053 1.69871 1.15527 1.19223 0.97234 1.36004 0.85584 0.91748 1.25038 0.98423 0.99158 0.97066 1.70037 1.24610 1.40966 1.19176 0.86246 0.78984 0.79829 0.81868 1.20267 1.21755 1.21540 1.20764 0.83267 0.96810 0.94577 1.22272 0.98907 1.00138 0.96032 0.92569 0.92667 0.90778 0.76635 0.83689 0.83372 0.83163 0.91409 0.92267 0.93471 0.96679 0.92950 0.93709 0.96493 0.89444 0.92724 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.13 37.16 0.34 -1.67 16 2 C 0.14 1.93 2.16 -67.93 -0.15 1.78 16 3 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 4 N -0.71 -8.02 4.31 -54.79 -0.24 -8.26 16 5 C 0.56 7.32 7.73 -12.40 -0.10 7.23 16 6 O -0.52 -9.04 15.00 5.30 0.08 -8.96 16 7 C -0.14 -1.49 5.88 -104.92 -0.62 -2.10 16 8 C -0.07 -0.44 9.54 -39.18 -0.37 -0.81 16 9 C -0.11 -0.52 10.03 -39.64 -0.40 -0.92 16 10 C -0.10 -0.61 10.01 -39.45 -0.40 -1.01 16 11 C 0.06 0.53 7.30 -39.42 -0.29 0.24 16 12 F -0.13 -1.30 17.18 2.25 0.04 -1.26 16 13 C 0.13 1.46 7.29 -38.90 -0.28 1.18 16 14 F -0.10 -1.51 15.46 2.25 0.03 -1.47 16 15 C -0.08 -1.24 1.79 -90.58 -0.16 -1.41 16 16 C -0.13 -2.03 5.22 -26.61 -0.14 -2.17 16 17 C 0.15 2.90 6.52 -3.71 -0.02 2.87 16 18 N -0.59 -14.37 2.99 -172.32 -0.52 -14.89 16 19 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 20 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 23 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 C 0.17 3.91 5.30 -3.71 -0.02 3.90 16 28 C -0.13 -2.38 5.04 -26.62 -0.13 -2.51 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16 32 H 0.40 3.36 6.42 -40.82 -0.26 3.10 16 33 H 0.15 0.60 6.40 -52.49 -0.34 0.27 16 34 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 35 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.27 6.07 -51.93 -0.31 1.96 16 44 H 0.05 0.86 6.36 -51.93 -0.33 0.53 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -32.68 368.35 -8.54 -41.22 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.12 Total: -0.87 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.97 Total: -2.38 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.13 Total: -48.34 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.07 Total: -2.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.68 -8.54 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997276482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.875 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds