Wall clock time and date at job start Tue Mar 31 2020 21:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46768 * 2 1 4 4 N 1.46500 * 109.46926 * 119.99684 * 2 1 3 5 5 C 1.34770 * 120.00150 * 275.00159 * 4 2 1 6 6 O 1.21576 * 120.00384 * 0.02562 * 5 4 2 7 7 C 1.47697 * 120.00241 * 180.02562 * 5 4 2 8 8 C 1.39683 * 120.15243 * 359.72426 * 7 5 4 9 9 C 1.37851 * 119.92476 * 179.74572 * 8 7 5 10 10 C 1.38454 * 120.23914 * 0.55553 * 9 8 7 11 11 C 1.38384 * 120.31168 * 359.69667 * 10 9 8 12 12 F 1.35097 * 119.95896 * 180.02562 * 11 10 9 13 13 C 1.38543 * 120.07419 * 0.02612 * 11 10 9 14 14 F 1.35097 * 120.12096 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47422 * 239.99932 * 2 1 3 16 16 C 1.53037 * 109.46088 * 180.02562 * 15 2 1 17 17 C 1.53191 * 109.31054 * 178.59928 * 16 15 2 18 18 N 1.46919 * 108.76476 * 54.66210 * 17 16 15 19 19 C 1.36939 * 120.63336 * 126.40499 * 18 17 16 20 20 H 1.08001 * 119.99678 * 331.82343 * 19 18 17 21 21 C 1.38816 * 120.00216 * 151.82742 * 19 18 17 22 22 N 1.31623 * 119.99795 * 343.06820 * 21 19 18 23 23 Si 1.86794 * 120.00105 * 163.06533 * 21 19 18 24 24 H 1.48499 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46859 * 120.00066 * 23 21 19 26 26 H 1.48491 * 109.47334 * 239.99710 * 23 21 19 27 27 C 1.46933 * 118.73668 * 306.37915 * 18 17 16 28 28 C 1.53039 * 109.45956 * 59.97111 * 15 2 1 29 29 H 1.09005 * 109.46768 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47207 * 299.99911 * 1 2 3 31 31 H 1.08997 * 109.46984 * 60.00187 * 1 2 3 32 32 H 0.97003 * 120.00015 * 95.00472 * 4 2 1 33 33 H 1.07999 * 120.03898 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.88040 * 180.27004 * 9 8 7 35 35 H 1.07998 * 119.83897 * 179.71994 * 10 9 8 36 36 H 1.09004 * 109.45647 * 300.00046 * 15 2 1 37 37 H 1.08998 * 109.49636 * 298.56931 * 16 15 2 38 38 H 1.09003 * 109.49565 * 58.66663 * 16 15 2 39 39 H 1.08995 * 109.60151 * 294.86758 * 17 16 15 40 40 H 1.09001 * 109.69700 * 174.50878 * 17 16 15 41 41 H 0.96999 * 119.99705 * 180.02562 * 22 21 19 42 42 H 1.09002 * 109.58500 * 293.81916 * 27 18 17 43 43 H 1.09001 * 109.70245 * 173.46706 * 27 18 17 44 44 H 1.09006 * 109.49940 * 301.33690 * 28 15 2 45 45 H 1.09001 * 109.50024 * 61.42991 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8574 1.1613 2.4119 7 6 2.6398 -0.7142 3.5630 8 6 2.9680 -2.0707 3.5053 9 6 3.4325 -2.7145 4.6323 10 6 3.5643 -2.0241 5.8251 11 6 3.2371 -0.6813 5.8948 12 9 3.3689 -0.0144 7.0623 13 6 2.7744 -0.0201 4.7686 14 9 2.4552 1.2909 4.8354 15 6 2.0401 -0.7212 -1.2492 16 6 3.5705 -0.7216 -1.2486 17 6 4.0774 -1.4748 -2.4825 18 7 3.4750 -0.8769 -3.6817 19 6 4.2609 -0.4515 -4.7192 20 1 5.2721 -0.1221 -4.5308 21 6 3.7580 -0.4436 -6.0131 22 7 2.6781 -1.1377 -6.3036 23 14 4.6138 0.5523 -7.3417 24 1 5.7970 1.2374 -6.7621 25 1 5.0525 -0.3534 -8.4338 26 1 3.6727 1.5638 -7.8857 27 6 2.0131 -0.7447 -3.7468 28 6 1.5293 -0.0001 -2.4986 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1527 33 1 2.8622 -2.6135 2.5776 34 1 3.6902 -3.7622 4.5857 35 1 3.9246 -2.5359 6.7053 36 1 1.6766 -1.7489 -1.2490 37 1 3.9345 0.3055 -1.2739 38 1 3.9338 -1.2148 -0.3469 39 1 3.7905 -2.5241 -2.4138 40 1 5.1630 -1.3959 -2.5408 41 1 2.3269 -1.1324 -7.2078 42 1 1.5578 -1.7345 -3.7813 43 1 1.7343 -0.1830 -4.6384 44 1 0.4395 0.0205 -2.4868 45 1 1.9127 1.0202 -2.5121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997276482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:07 Heat of formation + Delta-G solvation = -103.693437 kcal Electronic energy + Delta-G solvation = -29324.336061 eV Core-core repulsion = 24977.268186 eV Total energy + Delta-G solvation = -4347.067875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.57176 -49.65399 -41.39644 -39.79799 -39.01871 -36.83719 -34.60526 -33.27726 -32.08473 -31.45577 -31.32261 -30.29267 -27.16682 -25.83887 -24.47440 -23.77972 -23.61042 -22.23758 -21.63214 -20.76674 -19.55201 -18.70788 -18.37632 -18.29484 -17.50642 -17.38799 -16.98482 -16.71874 -16.21166 -15.90782 -15.85311 -15.72431 -15.45508 -15.29704 -15.11058 -14.86376 -14.76866 -14.35935 -14.05884 -13.96449 -13.55762 -13.38622 -13.14052 -13.04724 -12.91526 -12.80499 -12.72157 -12.62922 -12.39601 -12.13652 -11.99073 -11.77433 -11.48405 -11.30457 -11.07730 -10.97530 -10.52508 -10.34552 -10.03270 -9.86809 -8.64174 -7.86465 -5.30541 -0.54762 -0.16480 1.44701 1.47666 1.57138 1.63869 1.91858 2.47313 2.51563 2.69927 3.25388 3.27768 3.38897 3.62133 3.70755 3.74233 3.78516 3.96820 4.05299 4.11973 4.41204 4.43407 4.51319 4.58260 4.61650 4.68673 4.75481 4.80971 4.86605 4.92531 5.00291 5.01158 5.06153 5.11303 5.13244 5.19781 5.30092 5.38482 5.45111 5.49031 5.57897 5.62162 5.68101 5.82889 6.41615 6.45222 7.11513 7.17801 7.90670 8.40219 9.19424 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.002326 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.018972 B =12035.127299 C =12318.484297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.061 0.939 4 N -0.695 5.695 5 C 0.553 3.447 6 O -0.574 6.574 7 C -0.160 4.160 8 C -0.054 4.054 9 C -0.087 4.087 10 C -0.085 4.085 11 C 0.040 3.960 12 F -0.138 7.138 13 C 0.086 3.914 14 F -0.135 7.135 15 C -0.071 4.071 16 C -0.115 4.115 17 C 0.142 3.858 18 N -0.613 5.613 19 C -0.260 4.260 20 H 0.061 0.939 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.270 1.270 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.177 3.823 28 C -0.123 4.123 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.177 0.823 34 H 0.195 0.805 35 H 0.184 0.816 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.025 0.975 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.004 0.996 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -8.474 24.970 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.079 0.921 4 N -0.347 5.347 5 C 0.341 3.659 6 O -0.455 6.455 7 C -0.164 4.164 8 C -0.073 4.073 9 C -0.105 4.105 10 C -0.103 4.103 11 C 0.019 3.981 12 F -0.117 7.117 13 C 0.065 3.935 14 F -0.113 7.113 15 C -0.090 4.090 16 C -0.154 4.154 17 C 0.017 3.983 18 N -0.337 5.337 19 C -0.391 4.391 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.052 3.948 28 C -0.162 4.162 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.194 0.806 34 H 0.212 0.788 35 H 0.201 0.799 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.022 0.978 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.209 -7.578 24.877 26.034 hybrid contribution 0.300 1.135 -0.942 1.505 sum -0.908 -6.443 23.936 24.804 Atomic orbital electron populations 1.22157 0.94259 1.03184 1.01997 1.20913 0.94566 0.96239 0.83171 0.92108 1.45777 1.66003 1.14642 1.08294 1.18281 0.77691 0.86098 0.83852 1.90838 1.51688 1.17441 1.85497 1.19951 1.08082 0.96709 0.91679 1.21785 0.93581 0.90106 1.01816 1.21616 0.96393 1.02819 0.89643 1.21792 0.96770 0.89573 1.02191 1.17908 1.06867 0.92862 0.80417 1.91518 1.93986 1.80983 1.45227 1.18192 1.01976 0.78841 0.94514 1.91542 1.90090 1.32888 1.96827 1.21193 0.95591 0.99979 0.92262 1.21918 0.95144 1.00100 0.98221 1.21056 0.96314 0.94535 0.86429 1.44339 1.02499 1.70580 1.16240 1.19498 0.97418 1.35498 0.86639 0.92120 1.25718 0.99387 1.00393 0.99001 1.70166 1.26003 1.42415 1.19261 0.85305 0.78106 0.78310 0.79333 1.19463 1.21760 1.21800 1.20579 0.82876 0.95986 0.95383 1.22075 1.00196 0.98742 0.95192 0.90509 0.93654 0.90929 0.74498 0.80624 0.78755 0.79871 0.89429 0.94293 0.89633 0.95700 0.93413 0.94143 0.97807 0.93309 0.90532 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 9.13 71.98 0.66 -2.99 16 2 C 0.16 3.92 2.16 44.99 0.10 4.02 16 3 H 0.06 1.92 7.58 -2.38 -0.02 1.91 16 4 N -0.69 -14.04 4.31 -445.54 -1.92 -15.96 16 5 C 0.55 14.24 7.73 86.74 0.67 14.91 16 6 O -0.57 -20.74 15.00 -3.95 -0.06 -20.80 16 7 C -0.16 -3.11 5.88 -20.06 -0.12 -3.23 16 8 C -0.05 -0.47 9.54 22.53 0.21 -0.25 16 9 C -0.09 -0.35 10.03 22.23 0.22 -0.12 16 10 C -0.08 -0.66 10.01 22.36 0.22 -0.43 16 11 C 0.04 0.69 7.30 22.38 0.16 0.86 16 12 F -0.14 -2.87 17.18 44.97 0.77 -2.10 16 13 C 0.09 2.02 7.29 22.71 0.17 2.19 16 14 F -0.14 -4.29 15.46 44.97 0.70 -3.59 16 15 C -0.07 -1.96 1.79 -10.77 -0.02 -1.98 16 16 C -0.11 -3.44 5.22 30.67 0.16 -3.28 16 17 C 0.14 5.43 6.52 86.36 0.56 5.99 16 18 N -0.61 -29.88 2.99 -699.10 -2.09 -31.97 16 19 C -0.26 -14.25 9.58 84.03 0.81 -13.45 16 20 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 21 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 22 N -0.93 -54.50 11.19 21.65 0.24 -54.25 16 23 Si 0.96 45.02 29.59 68.60 2.03 47.05 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 27 C 0.18 8.19 5.30 86.36 0.46 8.65 16 28 C -0.12 -4.29 5.04 30.67 0.15 -4.13 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.69 6.40 -2.39 -0.02 1.67 16 32 H 0.42 5.19 6.42 -92.71 -0.59 4.59 16 33 H 0.18 0.37 6.40 -2.91 -0.02 0.35 16 34 H 0.20 -0.86 8.06 -2.91 -0.02 -0.88 16 35 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.92 7.41 -2.39 -0.02 1.90 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.05 2.62 6.07 -2.39 -0.01 2.60 16 44 H 0.08 2.33 6.36 -2.38 -0.02 2.32 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -77.61 368.35 4.93 -72.67 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 0.43 Total: 4.54 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 4.84 Total: 4.41 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.77 Total: -102.18 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 1.47 Total: -5.69 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.61 4.93 -72.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997276482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.021 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds