Wall clock time and date at job start Tue Mar 31 2020 21:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46716 * 2 1 4 4 C 1.50698 * 109.47055 * 240.00336 * 2 1 3 5 5 O 1.21279 * 120.00061 * 335.02133 * 4 2 1 6 6 N 1.34783 * 120.00130 * 155.01818 * 4 2 1 7 7 C 1.46926 * 120.62505 * 4.86107 * 6 4 2 8 8 C 1.52768 * 109.00481 * 233.57966 * 7 6 4 9 9 C 1.53037 * 109.38297 * 305.59084 * 8 7 6 10 10 N 1.46510 * 109.45595 * 181.25822 * 9 8 7 11 11 C 1.36935 * 119.99710 * 84.93697 * 10 9 8 12 12 H 1.08007 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.38813 * 119.99995 * 180.02562 * 11 10 9 14 14 N 1.31620 * 119.99975 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99856 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46975 * 90.00155 * 15 13 11 17 17 H 1.48501 * 109.47307 * 210.00187 * 15 13 11 18 18 H 1.48498 * 109.47266 * 330.00371 * 15 13 11 19 19 C 1.53041 * 109.53856 * 61.24634 * 9 8 7 20 20 C 1.46922 * 120.63167 * 185.14171 * 6 4 2 21 21 C 1.50697 * 109.47442 * 120.00016 * 2 1 3 22 22 C 1.38258 * 119.96498 * 240.00223 * 21 2 1 23 23 C 1.38214 * 120.06524 * 179.97438 * 22 21 2 24 24 C 1.38411 * 120.00490 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.03492 * 179.72189 * 24 23 22 26 26 C 1.38650 * 119.92669 * 359.97438 * 24 23 22 27 27 F 1.35103 * 120.03198 * 179.97438 * 26 24 23 28 28 C 1.38211 * 119.96056 * 59.97631 * 21 2 1 29 29 H 1.09005 * 109.47006 * 55.01352 * 1 2 3 30 30 H 1.09001 * 109.46845 * 175.01663 * 1 2 3 31 31 H 1.09002 * 109.46987 * 295.01731 * 1 2 3 32 32 H 1.08990 * 109.59218 * 353.41855 * 7 6 4 33 33 H 1.09003 * 109.58602 * 113.84727 * 7 6 4 34 34 H 1.09003 * 109.56216 * 185.55375 * 8 7 6 35 35 H 1.08998 * 109.35683 * 65.50489 * 8 7 6 36 36 H 1.08989 * 109.46198 * 301.21872 * 9 8 7 37 37 H 0.96993 * 120.00277 * 264.93325 * 10 9 8 38 38 H 0.97001 * 120.00140 * 180.02562 * 14 13 11 39 39 H 1.08991 * 109.49860 * 178.68187 * 19 9 8 40 40 H 1.08994 * 109.49785 * 58.57866 * 19 9 8 41 41 H 1.09002 * 109.58456 * 246.15600 * 20 6 4 42 42 H 1.08999 * 109.58681 * 6.43814 * 20 6 4 43 43 H 1.07996 * 119.96467 * 359.97438 * 22 21 2 44 44 H 1.08000 * 119.99461 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.00180 * 0.04954 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3369 -1.5389 -1.7787 6 7 3.2545 -0.4247 -1.7218 7 6 4.1505 0.4971 -1.0104 8 6 4.6005 1.5951 -1.9725 9 6 5.2161 0.9567 -3.2197 10 7 5.6755 2.0086 -4.1301 11 6 6.9149 2.5661 -3.9624 12 1 7.5537 2.2307 -3.1587 13 6 7.3500 3.5631 -4.8247 14 7 8.5411 4.0993 -4.6632 15 14 6.2449 4.1438 -6.2143 16 1 5.4005 5.2688 -5.7381 17 1 7.0808 4.6001 -7.3538 18 1 5.3749 3.0243 -6.6558 19 6 4.1662 0.0949 -3.9248 20 6 3.7136 -1.0245 -2.9820 21 6 2.0324 -0.7104 1.2304 22 6 2.8272 -0.0377 2.1400 23 6 3.2887 -0.6871 3.2695 24 6 2.9558 -2.0122 3.4906 25 9 3.4112 -2.6492 4.5916 26 6 2.1587 -2.6867 2.5784 27 9 1.8328 -3.9804 2.7920 28 6 1.6977 -2.0335 1.4486 29 1 -0.3633 0.5893 -0.8420 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3633 0.4346 0.9313 32 1 3.6215 0.9445 -0.1691 33 1 5.0226 -0.0476 -0.6484 34 1 5.3418 2.2274 -1.4837 35 1 3.7396 2.1987 -2.2599 36 1 6.0617 0.3336 -2.9289 37 1 5.1017 2.3101 -4.8517 38 1 8.8450 4.7963 -5.2655 39 1 4.5985 -0.3407 -4.8255 40 1 3.3095 0.7127 -4.1938 41 1 4.5493 -1.6958 -2.7841 42 1 2.8970 -1.5828 -3.4398 43 1 3.0877 0.9961 1.9678 44 1 3.9099 -0.1607 3.9790 45 1 1.0771 -2.5579 0.7371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997345344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:30 Heat of formation + Delta-G solvation = -89.105181 kcal Electronic energy + Delta-G solvation = -29552.097505 eV Core-core repulsion = 25205.662224 eV Total energy + Delta-G solvation = -4346.435281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.77234 -48.84758 -40.84499 -39.16305 -37.62151 -34.73393 -34.31563 -32.09071 -31.30693 -30.89095 -29.88283 -29.51830 -25.80569 -24.58723 -23.57602 -23.15708 -22.73226 -21.72071 -20.28848 -19.04487 -18.30795 -17.94992 -17.51909 -17.37265 -16.88763 -16.62327 -15.90757 -15.54258 -15.25808 -14.94109 -14.84673 -14.49534 -14.34778 -14.23185 -14.01211 -13.85920 -13.67539 -13.46693 -13.04678 -12.96382 -12.63366 -12.50676 -12.37422 -12.08237 -12.04289 -11.96190 -11.55841 -11.50650 -11.10520 -11.05438 -10.96975 -10.62504 -10.31719 -9.97273 -9.93084 -9.65856 -9.45803 -9.03007 -8.95441 -8.64939 -7.35942 -5.84270 -3.20529 0.45634 0.58963 2.45347 2.82673 3.00777 3.32061 3.35290 3.39929 3.40718 3.94938 4.09235 4.15471 4.33502 4.52573 4.54196 4.64379 4.75450 4.81959 4.99722 5.05443 5.14462 5.24696 5.26433 5.40105 5.42481 5.44548 5.47772 5.49454 5.54836 5.57118 5.63316 5.77008 5.82632 5.85783 5.97415 6.01491 6.07976 6.18882 6.29507 6.32828 6.43392 6.70804 6.84568 7.34834 7.90844 8.05185 8.34725 9.12722 9.85518 10.05001 11.33849 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002682 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.962129 B =10437.922314 C =11165.562239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 H 0.109 0.891 4 C 0.522 3.478 5 O -0.543 6.543 6 N -0.602 5.602 7 C 0.105 3.895 8 C -0.153 4.153 9 C 0.184 3.816 10 N -0.748 5.748 11 C -0.246 4.246 12 H 0.091 0.909 13 C 0.006 3.994 14 N -0.933 5.933 15 Si 0.884 3.116 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.277 1.277 19 C -0.142 4.142 20 C 0.116 3.884 21 C -0.057 4.057 22 C -0.092 4.092 23 C -0.121 4.121 24 C 0.066 3.934 25 F -0.129 7.129 26 C 0.071 3.929 27 F -0.128 7.128 28 C -0.113 4.113 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.434 -9.706 15.455 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.094 4.094 3 H 0.127 0.873 4 C 0.309 3.691 5 O -0.420 6.420 6 N -0.334 5.334 7 C -0.019 4.019 8 C -0.194 4.194 9 C 0.074 3.926 10 N -0.390 5.390 11 C -0.376 4.376 12 H 0.108 0.892 13 C -0.190 4.190 14 N -0.580 5.580 15 Si 0.714 3.286 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.203 1.203 19 C -0.181 4.181 20 C -0.007 4.007 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.140 4.140 24 C 0.046 3.954 25 F -0.108 7.108 26 C 0.050 3.950 27 F -0.106 7.106 28 C -0.132 4.132 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.163 0.837 44 H 0.168 0.832 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.522 -10.164 15.262 24.024 hybrid contribution -0.465 0.311 -0.763 0.946 sum -15.987 -9.853 14.499 23.725 Atomic orbital electron populations 1.21698 0.91107 1.03807 1.02465 1.20390 0.98641 1.00228 0.90191 0.87281 1.20301 0.81001 0.82612 0.85155 1.90675 1.56403 1.33919 1.61039 1.48173 1.15266 1.45896 1.24093 1.21876 0.93454 0.91382 0.95139 1.22585 1.01375 0.97341 0.98084 1.20130 0.93917 0.89389 0.89183 1.42794 1.17902 1.44127 1.34162 1.19056 0.91246 1.14713 1.12544 0.89170 1.24676 0.96477 0.98884 0.98983 1.69697 1.18335 1.29894 1.40087 0.86561 0.80305 0.78692 0.83004 1.21120 1.21742 1.20322 1.22249 0.99743 0.97403 0.98745 1.21616 1.00004 0.95487 0.83544 1.19389 0.97474 0.93201 0.95671 1.21071 0.96318 1.00828 0.92777 1.21087 1.01419 0.92036 0.99416 1.17744 0.99946 0.92155 0.85571 1.91538 1.87124 1.81781 1.50311 1.17639 1.00888 0.79941 0.96489 1.91543 1.90987 1.33401 1.94709 1.21040 1.00983 0.94965 0.96178 0.91507 0.91030 0.91506 0.90353 0.91083 0.89978 0.92222 0.92513 0.80633 0.93001 0.90416 0.91925 0.91346 0.89272 0.83674 0.83245 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.57 37.16 0.32 -0.76 16 2 C -0.07 -0.64 2.10 -92.92 -0.20 -0.83 16 3 H 0.11 0.77 6.22 -51.93 -0.32 0.45 16 4 C 0.52 6.33 6.42 -10.98 -0.07 6.26 16 5 O -0.54 -8.16 15.42 5.56 0.09 -8.07 16 6 N -0.60 -7.28 2.98 -173.03 -0.52 -7.79 16 7 C 0.10 1.15 6.19 -3.93 -0.02 1.12 16 8 C -0.15 -2.20 5.64 -26.83 -0.15 -2.35 16 9 C 0.18 3.14 2.73 -67.89 -0.19 2.95 16 10 N -0.75 -16.45 4.93 -53.38 -0.26 -16.72 16 11 C -0.25 -6.54 10.41 -15.06 -0.16 -6.70 16 12 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 13 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 14 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 15 Si 0.88 21.40 27.74 -169.99 -4.71 16.69 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 19 C -0.14 -2.06 5.55 -26.61 -0.15 -2.21 16 20 C 0.12 1.48 6.42 -3.71 -0.02 1.46 16 21 C -0.06 -0.47 4.56 -104.63 -0.48 -0.95 16 22 C -0.09 -0.62 8.95 -39.58 -0.35 -0.97 16 23 C -0.12 -0.88 10.02 -39.53 -0.40 -1.27 16 24 C 0.07 0.63 7.31 -39.37 -0.29 0.35 16 25 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 26 C 0.07 0.73 7.31 -39.36 -0.29 0.45 16 27 F -0.13 -1.50 17.18 2.25 0.04 -1.46 16 28 C -0.11 -1.09 8.84 -39.53 -0.35 -1.44 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.65 7.11 -51.93 -0.37 0.28 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.65 4.18 -51.93 -0.22 0.43 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.02 8.08 -51.94 -0.42 0.60 16 37 H 0.36 7.94 5.66 -40.82 -0.23 7.71 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 43 H 0.15 0.64 7.48 -52.49 -0.39 0.25 16 44 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.15 1.51 7.63 -52.49 -0.40 1.11 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -32.04 369.61 -7.98 -40.02 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.11 Total: 5.54 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.88 Total: -4.82 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.00 Total: -52.11 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.04 -7.98 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997345344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.086 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds