Wall clock time and date at job start Tue Mar 31 2020 21:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46716 * 2 1 4 4 C 1.50698 * 109.47055 * 240.00336 * 2 1 3 5 5 O 1.21279 * 120.00061 * 335.02133 * 4 2 1 6 6 N 1.34783 * 120.00130 * 155.01818 * 4 2 1 7 7 C 1.46926 * 120.62505 * 4.86107 * 6 4 2 8 8 C 1.52768 * 109.00481 * 233.57966 * 7 6 4 9 9 C 1.53037 * 109.38297 * 305.59084 * 8 7 6 10 10 N 1.46510 * 109.45595 * 181.25822 * 9 8 7 11 11 C 1.36935 * 119.99710 * 84.93697 * 10 9 8 12 12 H 1.08007 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.38813 * 119.99995 * 180.02562 * 11 10 9 14 14 N 1.31620 * 119.99975 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99856 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46975 * 90.00155 * 15 13 11 17 17 H 1.48501 * 109.47307 * 210.00187 * 15 13 11 18 18 H 1.48498 * 109.47266 * 330.00371 * 15 13 11 19 19 C 1.53041 * 109.53856 * 61.24634 * 9 8 7 20 20 C 1.46922 * 120.63167 * 185.14171 * 6 4 2 21 21 C 1.50697 * 109.47442 * 120.00016 * 2 1 3 22 22 C 1.38258 * 119.96498 * 240.00223 * 21 2 1 23 23 C 1.38214 * 120.06524 * 179.97438 * 22 21 2 24 24 C 1.38411 * 120.00490 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.03492 * 179.72189 * 24 23 22 26 26 C 1.38650 * 119.92669 * 359.97438 * 24 23 22 27 27 F 1.35103 * 120.03198 * 179.97438 * 26 24 23 28 28 C 1.38211 * 119.96056 * 59.97631 * 21 2 1 29 29 H 1.09005 * 109.47006 * 55.01352 * 1 2 3 30 30 H 1.09001 * 109.46845 * 175.01663 * 1 2 3 31 31 H 1.09002 * 109.46987 * 295.01731 * 1 2 3 32 32 H 1.08990 * 109.59218 * 353.41855 * 7 6 4 33 33 H 1.09003 * 109.58602 * 113.84727 * 7 6 4 34 34 H 1.09003 * 109.56216 * 185.55375 * 8 7 6 35 35 H 1.08998 * 109.35683 * 65.50489 * 8 7 6 36 36 H 1.08989 * 109.46198 * 301.21872 * 9 8 7 37 37 H 0.96993 * 120.00277 * 264.93325 * 10 9 8 38 38 H 0.97001 * 120.00140 * 180.02562 * 14 13 11 39 39 H 1.08991 * 109.49860 * 178.68187 * 19 9 8 40 40 H 1.08994 * 109.49785 * 58.57866 * 19 9 8 41 41 H 1.09002 * 109.58456 * 246.15600 * 20 6 4 42 42 H 1.08999 * 109.58681 * 6.43814 * 20 6 4 43 43 H 1.07996 * 119.96467 * 359.97438 * 22 21 2 44 44 H 1.08000 * 119.99461 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.00180 * 0.04954 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3369 -1.5389 -1.7787 6 7 3.2545 -0.4247 -1.7218 7 6 4.1505 0.4971 -1.0104 8 6 4.6005 1.5951 -1.9725 9 6 5.2161 0.9567 -3.2197 10 7 5.6755 2.0086 -4.1301 11 6 6.9149 2.5661 -3.9624 12 1 7.5537 2.2307 -3.1587 13 6 7.3500 3.5631 -4.8247 14 7 8.5411 4.0993 -4.6632 15 14 6.2449 4.1438 -6.2143 16 1 5.4005 5.2688 -5.7381 17 1 7.0808 4.6001 -7.3538 18 1 5.3749 3.0243 -6.6558 19 6 4.1662 0.0949 -3.9248 20 6 3.7136 -1.0245 -2.9820 21 6 2.0324 -0.7104 1.2304 22 6 2.8272 -0.0377 2.1400 23 6 3.2887 -0.6871 3.2695 24 6 2.9558 -2.0122 3.4906 25 9 3.4112 -2.6492 4.5916 26 6 2.1587 -2.6867 2.5784 27 9 1.8328 -3.9804 2.7920 28 6 1.6977 -2.0335 1.4486 29 1 -0.3633 0.5893 -0.8420 30 1 -0.3633 -1.0238 -0.0893 31 1 -0.3633 0.4346 0.9313 32 1 3.6215 0.9445 -0.1691 33 1 5.0226 -0.0476 -0.6484 34 1 5.3418 2.2274 -1.4837 35 1 3.7396 2.1987 -2.2599 36 1 6.0617 0.3336 -2.9289 37 1 5.1017 2.3101 -4.8517 38 1 8.8450 4.7963 -5.2655 39 1 4.5985 -0.3407 -4.8255 40 1 3.3095 0.7127 -4.1938 41 1 4.5493 -1.6958 -2.7841 42 1 2.8970 -1.5828 -3.4398 43 1 3.0877 0.9961 1.9678 44 1 3.9099 -0.1607 3.9790 45 1 1.0771 -2.5579 0.7371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997345344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:29 Heat of formation + Delta-G solvation = -107.722587 kcal Electronic energy + Delta-G solvation = -29552.904816 eV Core-core repulsion = 25205.662224 eV Total energy + Delta-G solvation = -4347.242592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.55214 -49.63699 -41.72078 -39.96437 -38.78407 -36.24201 -35.10190 -33.84593 -32.16680 -31.77650 -31.47793 -30.17819 -26.99400 -25.62534 -24.46737 -24.20006 -23.85807 -22.82923 -21.50782 -20.14375 -19.42817 -19.03385 -18.63068 -18.15813 -17.73799 -17.39809 -16.84700 -16.69620 -16.41525 -16.06547 -15.86917 -15.60855 -15.24722 -15.16551 -15.04633 -14.98553 -14.73618 -14.52356 -14.37542 -14.09099 -13.67898 -13.48084 -13.33739 -13.21826 -12.97644 -12.86774 -12.68110 -12.65356 -12.28664 -12.20935 -12.07913 -12.03508 -11.93142 -11.75646 -11.31007 -10.99457 -10.79236 -10.11360 -9.71915 -9.65313 -9.27779 -7.99080 -5.31783 -0.21765 -0.04485 1.40454 1.42165 1.49681 1.54234 1.96376 2.30346 2.50943 2.72956 3.23851 3.32654 3.42010 3.44437 3.57378 3.59615 3.88354 3.92973 3.99529 4.08970 4.11889 4.18609 4.29822 4.38220 4.41493 4.61598 4.65943 4.74206 4.78228 4.82041 4.84297 4.85600 4.89572 4.95126 5.02825 5.04553 5.09382 5.22723 5.28250 5.36109 5.50288 5.63529 5.68126 5.81566 6.25166 6.41005 7.11450 7.11609 7.88392 8.06174 9.22310 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.002682 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.962129 B =10437.922314 C =11165.562239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 H 0.137 0.863 4 C 0.518 3.482 5 O -0.576 6.576 6 N -0.604 5.604 7 C 0.112 3.888 8 C -0.143 4.143 9 C 0.174 3.826 10 N -0.753 5.753 11 C -0.222 4.222 12 H 0.062 0.938 13 C -0.064 4.064 14 N -0.984 5.984 15 Si 0.950 3.050 16 H -0.279 1.279 17 H -0.301 1.301 18 H -0.254 1.254 19 C -0.131 4.131 20 C 0.120 3.880 21 C -0.057 4.057 22 C -0.077 4.077 23 C -0.110 4.110 24 C 0.052 3.948 25 F -0.140 7.140 26 C 0.047 3.953 27 F -0.144 7.144 28 C -0.119 4.119 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.363 0.637 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.182 0.818 44 H 0.177 0.823 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.980 -8.703 16.360 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 H 0.155 0.845 4 C 0.307 3.693 5 O -0.456 6.456 6 N -0.336 5.336 7 C -0.011 4.011 8 C -0.184 4.184 9 C 0.066 3.934 10 N -0.395 5.395 11 C -0.353 4.353 12 H 0.080 0.920 13 C -0.255 4.255 14 N -0.635 5.635 15 Si 0.778 3.222 16 H -0.205 1.205 17 H -0.229 1.229 18 H -0.179 1.179 19 C -0.169 4.169 20 C -0.003 4.003 21 C -0.058 4.058 22 C -0.095 4.095 23 C -0.128 4.128 24 C 0.032 3.968 25 F -0.119 7.119 26 C 0.027 3.973 27 F -0.123 7.123 28 C -0.138 4.138 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.196 0.804 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.199 0.801 44 H 0.195 0.805 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.118 -9.203 16.199 25.300 hybrid contribution 0.026 -0.088 -0.979 0.983 sum -17.092 -9.292 15.220 24.701 Atomic orbital electron populations 1.21708 0.90767 1.02957 1.03588 1.20430 0.98948 1.00979 0.88356 0.84512 1.20927 0.80399 0.82148 0.85798 1.90667 1.57199 1.35432 1.62288 1.48250 1.15593 1.45917 1.23837 1.21906 0.94060 0.90194 0.94909 1.22371 1.00794 0.98066 0.97142 1.20408 0.94501 0.88563 0.89886 1.42842 1.16427 1.44950 1.35306 1.19026 0.92239 1.13424 1.10590 0.92023 1.25434 0.97999 0.99941 1.02174 1.69872 1.20708 1.31269 1.41696 0.85477 0.78500 0.78786 0.79389 1.20542 1.22867 1.17899 1.22101 0.98684 0.97355 0.98807 1.21496 1.00086 0.94871 0.83821 1.19424 0.97857 0.92566 0.95968 1.21450 0.94427 1.02110 0.91495 1.21426 1.00745 0.90791 0.99886 1.18044 1.00343 0.93190 0.85264 1.91507 1.87302 1.82226 1.50848 1.17882 1.02245 0.79629 0.97501 1.91492 1.91327 1.34583 1.94898 1.20992 1.01232 0.95789 0.95785 0.91664 0.92747 0.89270 0.86753 0.90364 0.91386 0.91965 0.93654 0.80413 0.93519 0.90684 0.91885 0.90643 0.89655 0.80056 0.80538 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.57 71.98 0.62 -1.19 16 2 C -0.07 -0.92 2.10 -12.29 -0.03 -0.95 16 3 H 0.14 1.17 6.22 -2.38 -0.01 1.15 16 4 C 0.52 11.34 6.42 87.66 0.56 11.90 16 5 O -0.58 -16.73 15.42 -3.02 -0.05 -16.77 16 6 N -0.60 -12.96 2.98 -819.73 -2.44 -15.40 16 7 C 0.11 2.03 6.19 86.22 0.53 2.57 16 8 C -0.14 -3.74 5.64 30.53 0.17 -3.57 16 9 C 0.17 5.68 2.73 45.02 0.12 5.80 16 10 N -0.75 -32.16 4.93 -322.80 -1.59 -33.75 16 11 C -0.22 -11.81 10.41 84.03 0.87 -10.94 16 12 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 13 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 14 N -0.98 -61.19 13.97 21.65 0.30 -60.89 16 15 Si 0.95 43.98 27.74 68.60 1.90 45.88 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 18 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 19 C -0.13 -3.54 5.55 30.67 0.17 -3.37 16 20 C 0.12 2.86 6.42 86.36 0.55 3.41 16 21 C -0.06 -0.77 4.56 -19.87 -0.09 -0.86 16 22 C -0.08 -0.67 8.95 22.27 0.20 -0.47 16 23 C -0.11 -1.19 10.02 22.31 0.22 -0.96 16 24 C 0.05 0.91 7.31 22.41 0.16 1.08 16 25 F -0.14 -2.90 17.18 44.97 0.77 -2.13 16 26 C 0.05 0.97 7.31 22.41 0.16 1.13 16 27 F -0.14 -3.50 17.18 44.97 0.77 -2.73 16 28 C -0.12 -2.17 8.84 22.31 0.20 -1.98 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 0.94 7.11 -2.39 -0.02 0.92 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 1.27 4.18 -2.39 -0.01 1.26 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 37 H 0.36 15.20 5.66 -92.71 -0.52 14.67 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 2.15 7.04 -2.39 -0.02 2.13 16 43 H 0.18 0.33 7.48 -2.91 -0.02 0.31 16 44 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.14 2.81 7.63 -2.91 -0.02 2.78 16 Total: -1.00 -72.07 369.61 5.02 -67.05 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.44 Total: 20.29 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.91 Total: -1.56 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -3.73 Total: -110.04 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.05 Total: -16.77 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.55 Total: -4.85 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Total: -72.07 5.02 -67.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997345344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.670 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds