Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46905 * 2 1 4 4 C 1.50697 * 109.46915 * 240.00210 * 2 1 3 5 5 O 1.21282 * 120.00208 * 259.09155 * 4 2 1 6 6 N 1.34774 * 120.00241 * 79.09180 * 4 2 1 7 7 C 1.46927 * 120.63298 * 184.34108 * 6 4 2 8 8 C 1.52762 * 109.00966 * 233.58678 * 7 6 4 9 9 C 1.53042 * 109.38360 * 305.58850 * 8 7 6 10 10 N 1.46495 * 109.46222 * 181.26254 * 9 8 7 11 11 C 1.36939 * 120.00128 * 84.93044 * 10 9 8 12 12 H 1.08003 * 120.00110 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31620 * 119.99809 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47014 * 60.00526 * 15 13 11 17 17 H 1.48507 * 109.46924 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47710 * 300.00097 * 15 13 11 19 19 C 1.53037 * 109.53815 * 61.23620 * 9 8 7 20 20 C 1.46924 * 120.63121 * 4.62309 * 6 4 2 21 21 C 1.50699 * 109.47264 * 120.00186 * 2 1 3 22 22 C 1.38229 * 119.98543 * 59.99711 * 21 2 1 23 23 C 1.38189 * 120.04870 * 180.02562 * 22 21 2 24 24 C 1.38494 * 120.02715 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.01624 * 179.97438 * 24 23 22 26 26 C 1.38404 * 119.97129 * 359.97438 * 24 23 22 27 27 C 1.38432 * 119.94928 * 0.02562 * 26 24 23 28 28 F 1.35103 * 120.01130 * 179.97438 * 27 26 24 29 29 H 1.09000 * 109.47439 * 53.90068 * 1 2 3 30 30 H 1.09004 * 109.46995 * 173.89918 * 1 2 3 31 31 H 1.09003 * 109.47247 * 293.89508 * 1 2 3 32 32 H 1.08999 * 109.58337 * 353.41901 * 7 6 4 33 33 H 1.08997 * 109.58631 * 113.84224 * 7 6 4 34 34 H 1.08998 * 109.56624 * 185.55536 * 8 7 6 35 35 H 1.09002 * 109.36260 * 65.49686 * 8 7 6 36 36 H 1.09007 * 109.44765 * 301.22686 * 9 8 7 37 37 H 0.97002 * 119.99762 * 264.92853 * 10 9 8 38 38 H 0.96997 * 119.99581 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.49874 * 178.68547 * 19 9 8 40 40 H 1.08999 * 109.52182 * 58.60615 * 19 9 8 41 41 H 1.08993 * 109.58766 * 246.15772 * 20 6 4 42 42 H 1.09008 * 109.58609 * 6.44096 * 20 6 4 43 43 H 1.07999 * 119.97931 * 0.02562 * 22 21 2 44 44 H 1.08003 * 119.98635 * 180.28033 * 23 22 21 45 45 H 1.07993 * 120.02073 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4218 -1.8563 -1.1527 6 7 2.0487 -0.0723 -2.4175 7 6 2.4455 -0.7800 -3.6424 8 6 3.5611 0.0043 -4.3309 9 6 3.1024 1.4465 -4.5584 10 7 4.1595 2.1923 -5.2457 11 6 4.2545 2.1444 -6.6110 12 1 3.5504 1.5565 -7.1810 13 6 5.2560 2.8515 -7.2622 14 7 6.1144 3.5676 -6.5675 15 14 5.3860 2.7856 -9.1245 16 1 4.1313 3.3035 -9.7269 17 1 6.5309 3.6198 -9.5706 18 1 5.5996 1.3810 -9.5565 19 6 2.8055 2.1078 -3.2106 20 6 1.6760 1.3459 -2.5103 21 6 2.0324 -0.7104 1.2304 22 6 1.6982 -2.0338 1.4489 23 6 2.1577 -2.6864 2.5770 24 6 2.9532 -2.0149 3.4903 25 9 3.4019 -2.6529 4.5934 26 6 3.2884 -0.6898 3.2726 27 6 2.8275 -0.0371 2.1421 28 9 3.1535 1.2565 1.9286 29 1 -0.3634 0.6055 -0.8303 30 1 -0.3633 -1.0219 -0.1092 31 1 -0.3634 0.4163 0.9396 32 1 2.8049 -1.7771 -3.3882 33 1 1.5897 -0.8578 -4.3130 34 1 3.7946 -0.4587 -5.2897 35 1 4.4489 0.0004 -3.6986 36 1 2.2002 1.4482 -5.1703 37 1 4.7921 2.7200 -4.7337 38 1 6.8143 4.0614 -7.0225 39 1 2.5012 3.1420 -3.3719 40 1 3.7002 2.0846 -2.5886 41 1 0.7562 1.4450 -3.0866 42 1 1.5254 1.7504 -1.5093 43 1 1.0776 -2.5582 0.7374 44 1 1.8998 -3.7217 2.7443 45 1 3.9083 -0.1653 3.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997345825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = -91.363325 kcal Electronic energy + Delta-G solvation = -29410.596849 eV Core-core repulsion = 25064.063647 eV Total energy + Delta-G solvation = -4346.533201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.29405 -49.27380 -40.63531 -39.01295 -37.37722 -34.69919 -34.29009 -32.02363 -31.11197 -30.86959 -29.59873 -29.02256 -25.54675 -24.61163 -23.51168 -23.14010 -22.73283 -21.83875 -20.12079 -18.88246 -18.52804 -17.84827 -17.12996 -16.81949 -16.50603 -16.22850 -15.87377 -15.56821 -15.40212 -15.13071 -14.84733 -14.72990 -14.29467 -14.02663 -13.83185 -13.64831 -13.55658 -13.34527 -13.07038 -12.85886 -12.58499 -12.40736 -12.23595 -12.13913 -11.93429 -11.58830 -11.48632 -11.46748 -10.92878 -10.90219 -10.83049 -10.44576 -10.30102 -9.97864 -9.73758 -9.62991 -9.32443 -8.92730 -8.90234 -8.55575 -7.00632 -5.79979 -3.09350 0.61723 0.75186 2.56549 2.89254 3.18307 3.41462 3.46135 3.47091 3.56734 4.05301 4.14453 4.23906 4.43398 4.55194 4.56171 4.71164 4.81888 4.94601 5.01499 5.19192 5.24675 5.34478 5.39881 5.43346 5.50298 5.54082 5.56085 5.59859 5.62823 5.71280 5.76412 5.81756 5.86399 5.94746 5.98147 6.17682 6.24835 6.41592 6.45610 6.51727 6.55918 6.88143 7.01935 7.43504 7.65593 8.13932 8.38298 9.49430 10.06499 10.41010 11.42517 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002374 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.169878 B =11793.261065 C =12060.027202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.109 0.891 4 C 0.522 3.478 5 O -0.541 6.541 6 N -0.601 5.601 7 C 0.113 3.887 8 C -0.151 4.151 9 C 0.180 3.820 10 N -0.724 5.724 11 C -0.241 4.241 12 H 0.070 0.930 13 C -0.013 4.013 14 N -0.933 5.933 15 Si 0.907 3.093 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 C -0.141 4.141 20 C 0.107 3.893 21 C -0.115 4.115 22 C -0.022 4.022 23 C -0.167 4.167 24 C 0.129 3.871 25 F -0.133 7.133 26 C -0.196 4.196 27 C 0.137 3.863 28 F -0.128 7.128 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 -8.663 19.984 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 H 0.127 0.873 4 C 0.309 3.691 5 O -0.419 6.419 6 N -0.334 5.334 7 C -0.009 4.009 8 C -0.192 4.192 9 C 0.070 3.930 10 N -0.364 5.364 11 C -0.372 4.372 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.581 5.581 15 Si 0.738 3.262 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 C -0.180 4.180 20 C -0.016 4.016 21 C -0.116 4.116 22 C -0.040 4.040 23 C -0.185 4.185 24 C 0.109 3.891 25 F -0.112 7.112 26 C -0.216 4.216 27 C 0.118 3.882 28 F -0.106 7.106 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.289 -9.237 19.834 25.599 hybrid contribution 0.762 0.410 -0.760 1.152 sum -12.527 -8.827 19.074 24.467 Atomic orbital electron populations 1.21765 0.91070 1.03320 1.03343 1.20232 0.98385 1.00742 0.90321 0.87295 1.20222 0.78060 0.86775 0.84065 1.90676 1.47897 1.18116 1.85168 1.48124 1.66187 1.11594 1.07471 1.21633 0.98164 0.96754 0.84388 1.22595 0.97296 0.98909 1.00391 1.20152 0.92514 0.89581 0.90797 1.42418 1.33632 1.56313 1.04075 1.19181 1.10826 1.24235 0.82957 0.91225 1.24753 0.98175 1.00087 0.97874 1.69651 1.19181 1.34880 1.34353 0.86278 0.77059 0.77363 0.85529 1.21251 1.21702 1.21265 1.22223 0.98030 0.99764 0.98024 1.21883 0.98386 0.79945 1.01384 1.19480 1.00646 0.95445 0.96042 1.20766 0.96335 0.92203 0.94675 1.21212 1.00692 1.01616 0.95030 1.17317 0.96838 0.90272 0.84653 1.91525 1.87398 1.81561 1.50700 1.20940 1.06152 0.94694 0.99808 1.17100 0.97203 0.79170 0.94759 1.91532 1.90802 1.33704 1.94566 0.91031 0.91593 0.91031 0.89658 0.91743 0.90662 0.92320 0.93400 0.78274 0.93423 0.90336 0.91710 0.90989 0.90052 0.83650 0.83982 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.78 37.16 0.33 -0.67 16 2 C -0.08 -0.76 2.04 -92.93 -0.19 -0.95 16 3 H 0.11 1.05 5.37 -51.93 -0.28 0.77 16 4 C 0.52 6.85 6.82 -10.99 -0.07 6.78 16 5 O -0.54 -8.61 14.02 5.56 0.08 -8.53 16 6 N -0.60 -7.83 2.98 -173.03 -0.52 -8.35 16 7 C 0.11 1.62 6.41 -3.93 -0.03 1.60 16 8 C -0.15 -2.63 5.64 -26.83 -0.15 -2.78 16 9 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 10 N -0.72 -17.53 5.12 -53.38 -0.27 -17.80 16 11 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 12 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 14 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 15 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.14 -2.10 5.55 -26.61 -0.15 -2.25 16 20 C 0.11 1.21 5.71 -3.71 -0.02 1.19 16 21 C -0.11 -1.21 4.60 -104.55 -0.48 -1.69 16 22 C -0.02 -0.21 7.91 -39.60 -0.31 -0.52 16 23 C -0.17 -1.50 10.03 -39.50 -0.40 -1.90 16 24 C 0.13 1.26 7.30 -39.43 -0.29 0.97 16 25 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 26 C -0.20 -1.92 10.01 -39.45 -0.39 -2.31 16 27 C 0.14 1.47 7.24 -39.43 -0.29 1.19 16 28 F -0.13 -1.44 16.19 2.25 0.04 -1.41 16 29 H 0.07 0.46 7.38 -51.93 -0.38 0.08 16 30 H 0.07 0.47 7.61 -51.93 -0.40 0.08 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.73 5.27 -51.92 -0.27 0.46 16 43 H 0.15 1.33 7.11 -52.49 -0.37 0.96 16 44 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -31.49 370.55 -8.38 -39.87 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.16 Total: 7.33 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.87 Total: -5.31 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.06 Total: -53.29 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.49 -8.38 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997345825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.491 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds