Wall clock time and date at job start Tue Mar 31 2020 21:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46905 * 2 1 4 4 C 1.50697 * 109.46915 * 240.00210 * 2 1 3 5 5 O 1.21282 * 120.00208 * 259.09155 * 4 2 1 6 6 N 1.34774 * 120.00241 * 79.09180 * 4 2 1 7 7 C 1.46927 * 120.63298 * 184.34108 * 6 4 2 8 8 C 1.52762 * 109.00966 * 233.58678 * 7 6 4 9 9 C 1.53042 * 109.38360 * 305.58850 * 8 7 6 10 10 N 1.46495 * 109.46222 * 181.26254 * 9 8 7 11 11 C 1.36939 * 120.00128 * 84.93044 * 10 9 8 12 12 H 1.08003 * 120.00110 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99971 * 179.97438 * 11 10 9 14 14 N 1.31620 * 119.99809 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47014 * 60.00526 * 15 13 11 17 17 H 1.48507 * 109.46924 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47710 * 300.00097 * 15 13 11 19 19 C 1.53037 * 109.53815 * 61.23620 * 9 8 7 20 20 C 1.46924 * 120.63121 * 4.62309 * 6 4 2 21 21 C 1.50699 * 109.47264 * 120.00186 * 2 1 3 22 22 C 1.38229 * 119.98543 * 59.99711 * 21 2 1 23 23 C 1.38189 * 120.04870 * 180.02562 * 22 21 2 24 24 C 1.38494 * 120.02715 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.01624 * 179.97438 * 24 23 22 26 26 C 1.38404 * 119.97129 * 359.97438 * 24 23 22 27 27 C 1.38432 * 119.94928 * 0.02562 * 26 24 23 28 28 F 1.35103 * 120.01130 * 179.97438 * 27 26 24 29 29 H 1.09000 * 109.47439 * 53.90068 * 1 2 3 30 30 H 1.09004 * 109.46995 * 173.89918 * 1 2 3 31 31 H 1.09003 * 109.47247 * 293.89508 * 1 2 3 32 32 H 1.08999 * 109.58337 * 353.41901 * 7 6 4 33 33 H 1.08997 * 109.58631 * 113.84224 * 7 6 4 34 34 H 1.08998 * 109.56624 * 185.55536 * 8 7 6 35 35 H 1.09002 * 109.36260 * 65.49686 * 8 7 6 36 36 H 1.09007 * 109.44765 * 301.22686 * 9 8 7 37 37 H 0.97002 * 119.99762 * 264.92853 * 10 9 8 38 38 H 0.96997 * 119.99581 * 179.97438 * 14 13 11 39 39 H 1.09007 * 109.49874 * 178.68547 * 19 9 8 40 40 H 1.08999 * 109.52182 * 58.60615 * 19 9 8 41 41 H 1.08993 * 109.58766 * 246.15772 * 20 6 4 42 42 H 1.09008 * 109.58609 * 6.44096 * 20 6 4 43 43 H 1.07999 * 119.97931 * 0.02562 * 22 21 2 44 44 H 1.08003 * 119.98635 * 180.28033 * 23 22 21 45 45 H 1.07993 * 120.02073 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4218 -1.8563 -1.1527 6 7 2.0487 -0.0723 -2.4175 7 6 2.4455 -0.7800 -3.6424 8 6 3.5611 0.0043 -4.3309 9 6 3.1024 1.4465 -4.5584 10 7 4.1595 2.1923 -5.2457 11 6 4.2545 2.1444 -6.6110 12 1 3.5504 1.5565 -7.1810 13 6 5.2560 2.8515 -7.2622 14 7 6.1144 3.5676 -6.5675 15 14 5.3860 2.7856 -9.1245 16 1 4.1313 3.3035 -9.7269 17 1 6.5309 3.6198 -9.5706 18 1 5.5996 1.3810 -9.5565 19 6 2.8055 2.1078 -3.2106 20 6 1.6760 1.3459 -2.5103 21 6 2.0324 -0.7104 1.2304 22 6 1.6982 -2.0338 1.4489 23 6 2.1577 -2.6864 2.5770 24 6 2.9532 -2.0149 3.4903 25 9 3.4019 -2.6529 4.5934 26 6 3.2884 -0.6898 3.2726 27 6 2.8275 -0.0371 2.1421 28 9 3.1535 1.2565 1.9286 29 1 -0.3634 0.6055 -0.8303 30 1 -0.3633 -1.0219 -0.1092 31 1 -0.3634 0.4163 0.9396 32 1 2.8049 -1.7771 -3.3882 33 1 1.5897 -0.8578 -4.3130 34 1 3.7946 -0.4587 -5.2897 35 1 4.4489 0.0004 -3.6986 36 1 2.2002 1.4482 -5.1703 37 1 4.7921 2.7200 -4.7337 38 1 6.8143 4.0614 -7.0225 39 1 2.5012 3.1420 -3.3719 40 1 3.7002 2.0846 -2.5886 41 1 0.7562 1.4450 -3.0866 42 1 1.5254 1.7504 -1.5093 43 1 1.0776 -2.5582 0.7374 44 1 1.8998 -3.7217 2.7443 45 1 3.9083 -0.1653 3.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997345825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:36 Heat of formation + Delta-G solvation = -108.912714 kcal Electronic energy + Delta-G solvation = -29411.357847 eV Core-core repulsion = 25064.063647 eV Total energy + Delta-G solvation = -4347.294200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.10620 -50.04311 -41.61911 -39.90108 -38.61270 -36.16866 -35.26645 -33.74364 -32.08436 -31.81569 -31.07643 -29.98559 -26.80834 -25.80169 -24.53551 -24.15802 -24.05611 -22.88245 -21.37767 -20.02304 -19.31237 -19.07671 -18.67634 -17.77052 -17.39974 -17.02072 -16.73856 -16.63824 -16.40014 -16.34208 -16.08247 -15.54352 -15.47956 -15.38211 -15.16768 -14.94127 -14.77301 -14.42073 -13.98947 -13.88084 -13.67427 -13.27104 -13.24969 -13.12680 -12.95245 -12.80484 -12.77689 -12.61187 -12.28255 -12.26518 -12.23262 -12.02338 -11.92736 -11.67816 -11.39405 -10.89120 -10.69969 -10.07096 -9.69096 -9.65524 -9.00949 -7.93686 -5.22163 -0.14606 0.00702 1.47466 1.50027 1.55780 1.56686 1.94265 2.37307 2.56588 2.80883 3.27247 3.39166 3.39472 3.44991 3.63347 3.79614 3.83733 3.91546 4.05611 4.13413 4.16910 4.18762 4.26907 4.38342 4.42348 4.61242 4.68365 4.76505 4.79939 4.84349 4.84942 4.87552 4.89227 4.93949 4.98485 5.04962 5.11876 5.21139 5.29570 5.32968 5.49178 5.54105 5.60710 5.72203 6.28337 6.41260 7.11514 7.34292 8.10920 8.32989 9.29744 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002374 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.169878 B =11793.261065 C =12060.027202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 H 0.115 0.885 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.603 5.603 7 C 0.123 3.877 8 C -0.139 4.139 9 C 0.174 3.826 10 N -0.738 5.738 11 C -0.236 4.236 12 H 0.078 0.922 13 C -0.078 4.078 14 N -0.972 5.972 15 Si 0.970 3.030 16 H -0.275 1.275 17 H -0.299 1.299 18 H -0.280 1.280 19 C -0.134 4.134 20 C 0.113 3.887 21 C -0.123 4.123 22 C -0.027 4.027 23 C -0.161 4.161 24 C 0.120 3.880 25 F -0.136 7.136 26 C -0.198 4.198 27 C 0.122 3.878 28 F -0.134 7.134 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.370 0.630 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.151 0.849 44 H 0.163 0.837 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.909 -9.169 20.542 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 H 0.132 0.868 4 C 0.308 3.692 5 O -0.452 6.452 6 N -0.335 5.335 7 C 0.000 4.000 8 C -0.180 4.180 9 C 0.065 3.935 10 N -0.377 5.377 11 C -0.368 4.368 12 H 0.096 0.904 13 C -0.270 4.270 14 N -0.623 5.623 15 Si 0.800 3.200 16 H -0.201 1.201 17 H -0.225 1.225 18 H -0.207 1.207 19 C -0.173 4.173 20 C -0.009 4.009 21 C -0.124 4.124 22 C -0.045 4.045 23 C -0.180 4.180 24 C 0.100 3.900 25 F -0.115 7.115 26 C -0.217 4.217 27 C 0.102 3.898 28 F -0.113 7.113 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.202 0.798 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.129 0.871 43 H 0.169 0.831 44 H 0.181 0.819 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.728 -9.765 20.409 27.555 hybrid contribution 1.494 0.495 -0.867 1.797 sum -14.234 -9.270 19.543 25.893 Atomic orbital electron populations 1.21807 0.88625 1.03913 1.04789 1.20268 1.00269 1.00234 0.88312 0.86765 1.20785 0.77241 0.86537 0.84658 1.90662 1.49208 1.19673 1.85649 1.48185 1.66048 1.12233 1.07071 1.21425 0.97590 0.95766 0.85209 1.22381 0.97653 0.98622 0.99384 1.20428 0.90938 0.89664 0.92424 1.42669 1.34733 1.56827 1.03499 1.19591 1.10053 1.22722 0.84435 0.90443 1.25549 0.98547 1.00787 1.02141 1.69813 1.20126 1.36522 1.35799 0.85255 0.76922 0.77263 0.80601 1.20096 1.22528 1.20662 1.22115 0.98989 1.00308 0.95848 1.22005 0.97469 0.78346 1.03107 1.19641 1.00706 0.95888 0.96213 1.20884 0.96567 0.92052 0.94998 1.21453 0.99692 1.02517 0.94328 1.17428 0.97283 0.90403 0.84855 1.91519 1.87497 1.81586 1.50863 1.21104 1.05955 0.94863 0.99799 1.17227 0.97951 0.79145 0.95435 1.91511 1.90976 1.34107 1.94666 0.89652 0.91479 0.89528 0.90508 0.89592 0.92485 0.94761 0.92830 0.79832 0.94168 0.89909 0.93239 0.88410 0.87058 0.83090 0.81939 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.78 71.98 0.63 -0.86 16 2 C -0.07 -1.23 2.04 -12.29 -0.03 -1.26 16 3 H 0.11 1.89 5.37 -2.39 -0.01 1.88 16 4 C 0.52 12.67 6.82 87.66 0.60 13.27 16 5 O -0.57 -17.60 14.02 -3.04 -0.04 -17.65 16 6 N -0.60 -14.43 2.98 -819.75 -2.44 -16.87 16 7 C 0.12 3.37 6.41 86.22 0.55 3.92 16 8 C -0.14 -4.86 5.64 30.53 0.17 -4.69 16 9 C 0.17 6.33 2.73 45.02 0.12 6.46 16 10 N -0.74 -36.16 5.12 -322.81 -1.65 -37.82 16 11 C -0.24 -12.78 9.93 84.03 0.83 -11.95 16 12 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 13 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 14 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 15 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.13 -3.80 5.55 30.67 0.17 -3.63 16 20 C 0.11 2.20 5.71 86.36 0.49 2.70 16 21 C -0.12 -2.40 4.60 -19.82 -0.09 -2.49 16 22 C -0.03 -0.48 7.91 22.26 0.18 -0.31 16 23 C -0.16 -2.64 10.03 22.32 0.22 -2.41 16 24 C 0.12 2.19 7.30 22.37 0.16 2.35 16 25 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 26 C -0.20 -3.66 10.01 22.36 0.22 -3.44 16 27 C 0.12 2.48 7.24 22.37 0.16 2.64 16 28 F -0.13 -2.90 16.19 44.97 0.73 -2.17 16 29 H 0.08 0.73 7.38 -2.39 -0.02 0.72 16 30 H 0.07 0.76 7.61 -2.38 -0.02 0.74 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 37 H 0.37 19.83 7.80 -92.71 -0.72 19.11 16 38 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.57 5.27 -2.38 -0.01 1.56 16 43 H 0.15 2.50 7.11 -2.91 -0.02 2.48 16 44 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -69.08 370.55 4.86 -64.23 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.30 Total: 27.13 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.88 Total: -3.69 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -3.81 Total: -113.82 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.04 Total: -17.65 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 1.50 Total: -3.97 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.08 4.86 -64.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997345825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.685 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds