Wall clock time and date at job start Tue Mar 31 2020 21:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46978 * 2 1 4 4 N 1.46502 * 109.46820 * 119.99291 * 2 1 3 5 5 C 1.34773 * 120.00133 * 274.72596 * 4 2 1 6 6 O 1.21593 * 120.00083 * 0.27531 * 5 4 2 7 7 C 1.47545 * 120.00304 * 180.27631 * 5 4 2 8 8 C 1.39902 * 120.18648 * 89.72428 * 7 5 4 9 9 F 1.35102 * 120.09964 * 359.97438 * 8 7 5 10 10 C 1.38226 * 119.80746 * 179.70097 * 8 7 5 11 11 C 1.38305 * 120.18432 * 0.59947 * 10 8 7 12 12 C 1.38311 * 120.38437 * 359.67392 * 11 10 8 13 13 C 1.38219 * 120.18949 * 0.02667 * 12 11 10 14 14 F 1.35099 * 120.09354 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47353 * 239.99199 * 2 1 3 16 16 C 1.53045 * 109.46252 * 180.02562 * 15 2 1 17 17 C 1.53188 * 109.31378 * 178.61342 * 16 15 2 18 18 N 1.46928 * 108.77369 * 54.63967 * 17 16 15 19 19 C 1.36939 * 120.63002 * 126.40701 * 18 17 16 20 20 H 1.07994 * 120.00198 * 331.81132 * 19 18 17 21 21 C 1.38812 * 119.99546 * 151.80623 * 19 18 17 22 22 N 1.31612 * 120.00429 * 343.09031 * 21 19 18 23 23 Si 1.86805 * 119.99689 * 163.07980 * 21 19 18 24 24 H 1.48507 * 109.46658 * 90.00369 * 23 21 19 25 25 H 1.48498 * 109.47338 * 210.00103 * 23 21 19 26 26 H 1.48494 * 109.47198 * 330.00620 * 23 21 19 27 27 C 1.46924 * 118.73928 * 306.39057 * 18 17 16 28 28 C 1.53043 * 109.45854 * 60.00415 * 15 2 1 29 29 H 1.08997 * 109.46708 * 60.00978 * 1 2 3 30 30 H 1.08999 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 300.00593 * 1 2 3 32 32 H 0.97001 * 119.99900 * 95.00687 * 4 2 1 33 33 H 1.07998 * 119.90862 * 180.31787 * 10 8 7 34 34 H 1.07999 * 119.80963 * 179.70000 * 11 10 8 35 35 H 1.08002 * 119.90351 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.46421 * 300.02995 * 15 2 1 37 37 H 1.08997 * 109.49759 * 298.57383 * 16 15 2 38 38 H 1.09001 * 109.49203 * 58.66545 * 16 15 2 39 39 H 1.08996 * 109.58616 * 294.85113 * 17 16 15 40 40 H 1.09004 * 109.69969 * 174.49389 * 17 16 15 41 41 H 0.97001 * 120.00484 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.58513 * 293.82332 * 27 18 17 43 43 H 1.08997 * 109.58888 * 173.39966 * 27 18 17 44 44 H 1.09008 * 109.49553 * 301.33399 * 28 15 2 45 45 H 1.08995 * 109.50165 * 61.39957 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1523 -0.0167 2.3558 6 8 1.8631 1.1631 2.4103 7 6 2.6498 -0.7106 3.5591 8 6 4.0218 -0.7544 3.8291 9 9 4.8971 -0.1615 2.9880 10 6 4.4789 -1.4013 4.9619 11 6 3.5850 -2.0147 5.8207 12 6 2.2274 -1.9811 5.5584 13 6 1.7527 -1.3334 4.4334 14 9 0.4263 -1.3022 4.1788 15 6 2.0401 -0.7214 -1.2491 16 6 3.5706 -0.7218 -1.2485 17 6 4.0775 -1.4748 -2.4824 18 7 3.4747 -0.8773 -3.6818 19 6 4.2605 -0.4518 -4.7194 20 1 5.2715 -0.1219 -4.5312 21 6 3.7576 -0.4446 -6.0132 22 7 2.6779 -1.1391 -6.3035 23 14 4.6131 0.5509 -7.3423 24 1 5.6369 -0.2922 -8.0105 25 1 3.6135 1.0023 -8.3434 26 1 5.2692 1.7338 -6.7297 27 6 2.0129 -0.7453 -3.7468 28 6 1.5299 0.0002 -2.4986 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2491 -1.6316 1.1528 33 1 5.5372 -1.4317 5.1746 34 1 3.9491 -2.5226 6.7016 35 1 1.5364 -2.4631 6.2341 36 1 1.6763 -1.7488 -1.2491 37 1 3.9346 0.3053 -1.2739 38 1 3.9338 -1.2148 -0.3468 39 1 3.7907 -2.5241 -2.4135 40 1 5.1631 -1.3957 -2.5409 41 1 2.3267 -1.1344 -7.2076 42 1 1.5578 -1.7351 -3.7809 43 1 1.7361 -0.1826 -4.6383 44 1 0.4401 0.0212 -2.4870 45 1 1.9133 1.0204 -2.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997406448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:11 Heat of formation + Delta-G solvation = -105.988422 kcal Electronic energy + Delta-G solvation = -29726.468177 eV Core-core repulsion = 25379.300784 eV Total energy + Delta-G solvation = -4347.167393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.19975 -50.17678 -41.33682 -39.80797 -39.11464 -36.89001 -34.61071 -33.27775 -32.18053 -31.44144 -31.41643 -30.40179 -27.20957 -25.77524 -24.39546 -23.93478 -23.68694 -22.28009 -21.72621 -20.82175 -19.49625 -18.90157 -18.52132 -18.44038 -17.63342 -16.95120 -16.84557 -16.77878 -16.48449 -16.36590 -15.83504 -15.75443 -15.52580 -15.34714 -15.11612 -14.91842 -14.79151 -14.41917 -14.07237 -13.85613 -13.61461 -13.44180 -13.10861 -13.00046 -12.97654 -12.89150 -12.77824 -12.64906 -12.47060 -12.20081 -12.04242 -11.82774 -11.56731 -11.43634 -11.14457 -11.07346 -10.54358 -10.25965 -10.20880 -9.88305 -8.67593 -7.88533 -5.33259 -0.33647 -0.12477 1.22759 1.44405 1.46456 1.56078 1.91573 2.26181 2.50165 2.64429 3.25621 3.26918 3.35658 3.62257 3.70082 3.73648 3.76654 3.89904 4.00935 4.12855 4.33357 4.39123 4.51533 4.53711 4.59507 4.63052 4.68485 4.74466 4.85705 4.90173 4.92641 4.98373 4.99711 5.05794 5.12254 5.12539 5.22579 5.30412 5.36877 5.41425 5.52854 5.63721 5.64439 5.77522 6.28219 6.39077 6.93789 7.14987 7.86638 8.37597 9.17660 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.002666 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.010008 B =10498.370625 C =11230.422558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 H 0.064 0.936 4 N -0.696 5.696 5 C 0.563 3.437 6 O -0.570 6.570 7 C -0.223 4.223 8 C 0.138 3.862 9 F -0.139 7.139 10 C -0.153 4.153 11 C -0.025 4.025 12 C -0.151 4.151 13 C 0.142 3.858 14 F -0.136 7.136 15 C -0.072 4.072 16 C -0.113 4.113 17 C 0.143 3.857 18 N -0.612 5.612 19 C -0.265 4.265 20 H 0.061 0.939 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.274 1.274 27 C 0.178 3.822 28 C -0.121 4.121 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.413 0.587 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.180 0.820 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.048 0.952 41 H 0.250 0.750 42 H 0.002 0.998 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -5.662 28.549 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.082 0.918 4 N -0.346 5.346 5 C 0.349 3.651 6 O -0.449 6.449 7 C -0.228 4.228 8 C 0.118 3.882 9 F -0.117 7.117 10 C -0.171 4.171 11 C -0.043 4.043 12 C -0.170 4.170 13 C 0.122 3.878 14 F -0.115 7.115 15 C -0.091 4.091 16 C -0.152 4.152 17 C 0.018 3.982 18 N -0.336 5.336 19 C -0.395 4.395 20 H 0.079 0.921 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.199 1.199 27 C 0.053 3.947 28 C -0.161 4.161 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.250 0.750 33 H 0.194 0.806 34 H 0.214 0.786 35 H 0.197 0.803 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.982 -4.817 28.352 28.775 hybrid contribution 0.270 0.477 -1.753 1.837 sum -0.712 -4.340 26.599 26.960 Atomic orbital electron populations 1.22144 0.93946 1.03065 1.02265 1.20997 0.94828 0.96252 0.83067 0.91758 1.46029 1.65247 1.14478 1.08813 1.18231 0.77098 0.86114 0.83696 1.90794 1.51572 1.17151 1.85414 1.19905 0.94241 1.08886 0.99772 1.17727 0.84093 0.95743 0.90621 1.91558 1.67989 1.81672 1.70512 1.21622 1.03997 0.99108 0.92405 1.21590 0.90376 0.93526 0.98785 1.21622 0.98590 1.00917 0.95825 1.17643 0.76595 0.98182 0.95412 1.91544 1.31300 1.94531 1.94088 1.21192 0.95529 0.99791 0.92573 1.21883 0.95248 1.00132 0.97953 1.21019 0.96363 0.94307 0.86526 1.44329 1.02548 1.70552 1.16143 1.19469 0.97523 1.35867 0.86645 0.92095 1.25753 0.99355 1.00292 0.99017 1.70162 1.25988 1.42323 1.19378 0.85332 0.77586 0.78891 0.78978 1.20966 1.21675 1.19929 1.20585 0.82811 0.95912 0.95413 1.22077 1.00284 0.98811 0.94895 0.90370 0.90934 0.93496 0.75044 0.80617 0.78608 0.80308 0.90038 0.93986 0.90702 0.96160 0.93302 0.94045 0.97992 0.92935 0.90348 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.14 71.98 0.66 -3.42 16 2 C 0.15 4.44 2.16 44.99 0.10 4.54 16 3 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 4 N -0.70 -18.20 4.36 -445.69 -1.94 -20.14 16 5 C 0.56 16.77 6.51 86.70 0.56 17.33 16 6 O -0.57 -21.83 16.77 -4.01 -0.07 -21.89 16 7 C -0.22 -5.07 5.64 -20.02 -0.11 -5.18 16 8 C 0.14 2.68 7.29 22.67 0.17 2.84 16 9 F -0.14 -3.43 16.83 44.97 0.76 -2.68 16 10 C -0.15 -1.48 10.01 22.28 0.22 -1.26 16 11 C -0.03 -0.12 10.03 22.30 0.22 0.11 16 12 C -0.15 -1.30 10.01 22.28 0.22 -1.08 16 13 C 0.14 2.55 7.29 22.67 0.17 2.72 16 14 F -0.14 -2.97 16.83 44.97 0.76 -2.21 16 15 C -0.07 -2.26 1.79 -10.77 -0.02 -2.28 16 16 C -0.11 -3.87 5.22 30.67 0.16 -3.71 16 17 C 0.14 5.98 6.52 86.36 0.56 6.55 16 18 N -0.61 -31.27 2.99 -699.11 -2.09 -33.36 16 19 C -0.26 -14.95 9.58 84.03 0.81 -14.14 16 20 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 21 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 22 N -0.93 -55.58 11.20 21.65 0.24 -55.34 16 23 Si 0.96 45.73 29.59 68.60 2.03 47.76 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 27 C 0.18 8.60 5.30 86.36 0.46 9.06 16 28 C -0.12 -4.52 5.04 30.67 0.15 -4.37 16 29 H 0.08 1.97 6.40 -2.39 -0.02 1.96 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.41 8.74 8.37 -92.71 -0.78 7.96 16 33 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.20 -0.85 8.06 -2.91 -0.02 -0.88 16 35 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 2.15 7.41 -2.39 -0.02 2.14 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 44 H 0.08 2.54 6.36 -2.38 -0.02 2.52 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.97 373.78 4.67 -71.29 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.24 Total: 11.20 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.75 Total: 5.36 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -3.79 Total: -108.84 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.89 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.51 Total: -4.89 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.97 4.67 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997406448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.695 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds