Wall clock time and date at job start Tue Mar 31 2020 21:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46839 * 2 1 4 4 N 1.46498 * 109.46807 * 240.00171 * 2 1 3 5 5 C 1.34772 * 120.00082 * 85.00293 * 4 2 1 6 6 O 1.21583 * 120.00261 * 359.97438 * 5 4 2 7 7 C 1.47552 * 119.99979 * 179.97438 * 5 4 2 8 8 C 1.39901 * 120.18863 * 89.71747 * 7 5 4 9 9 F 1.35101 * 120.09776 * 359.97438 * 8 7 5 10 10 C 1.38220 * 119.80143 * 179.79072 * 8 7 5 11 11 C 1.38300 * 120.19088 * 0.48542 * 10 8 7 12 12 C 1.38299 * 120.38788 * 359.74722 * 11 10 8 13 13 C 1.38224 * 120.18471 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.09281 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47442 * 120.00129 * 2 1 3 16 16 C 1.53046 * 109.45898 * 60.02365 * 15 2 1 17 17 C 1.53200 * 109.31151 * 178.60336 * 16 15 2 18 18 N 1.46921 * 108.76355 * 54.65594 * 17 16 15 19 19 C 1.36936 * 120.62950 * 126.40401 * 18 17 16 20 20 H 1.07997 * 120.00293 * 331.82870 * 19 18 17 21 21 C 1.38816 * 120.00068 * 151.82112 * 19 18 17 22 22 N 1.31618 * 120.00138 * 343.08373 * 21 19 18 23 23 Si 1.86804 * 119.99962 * 163.08230 * 21 19 18 24 24 H 1.48500 * 109.47167 * 60.00189 * 23 21 19 25 25 H 1.48504 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.46911 * 300.00067 * 23 21 19 27 27 C 1.46932 * 118.74161 * 306.38617 * 18 17 16 28 28 C 1.53042 * 109.45878 * 299.97212 * 15 2 1 29 29 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47072 * 59.99746 * 1 2 3 31 31 H 1.08996 * 109.46739 * 299.99651 * 1 2 3 32 32 H 0.97006 * 120.00221 * 264.99552 * 4 2 1 33 33 H 1.08007 * 119.90261 * 180.25378 * 10 8 7 34 34 H 1.08009 * 119.80580 * 179.76429 * 11 10 8 35 35 H 1.07999 * 119.91113 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.46437 * 179.97438 * 15 2 1 37 37 H 1.08991 * 109.49817 * 298.56627 * 16 15 2 38 38 H 1.08993 * 109.49493 * 58.66906 * 16 15 2 39 39 H 1.09003 * 109.59423 * 294.86932 * 17 16 15 40 40 H 1.08994 * 109.69836 * 174.51084 * 17 16 15 41 41 H 0.96992 * 120.00347 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.57974 * 293.81995 * 27 18 17 43 43 H 1.09001 * 109.70303 * 173.47187 * 27 18 17 44 44 H 1.08998 * 109.49891 * 301.33614 * 28 15 2 45 45 H 1.09003 * 109.49561 * 61.39959 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8576 1.1614 -2.4118 7 6 2.6394 -0.7136 -3.5618 8 6 1.7390 -1.3427 -4.4283 9 9 0.4142 -1.3161 -4.1648 10 6 2.2085 -1.9881 -5.5567 11 6 3.5648 -2.0218 -5.8250 12 6 4.4623 -1.4067 -4.9712 13 6 4.0097 -0.7528 -3.8407 14 9 4.8881 -0.1530 -3.0077 15 6 2.0401 -0.7212 1.2492 16 6 1.5304 -2.1643 1.2486 17 6 2.0715 -2.8933 2.4826 18 7 1.7087 -2.1259 3.6818 19 6 1.0456 -2.7251 4.7193 20 1 0.3980 -3.5685 4.5310 21 6 1.2059 -2.2483 6.0131 22 7 2.2203 -1.4615 6.3036 23 14 -0.0180 -2.7235 7.3419 24 1 -0.0265 -4.1998 7.5021 25 1 0.3737 -2.0880 8.6258 26 1 -1.3743 -2.2598 6.9542 27 6 2.0713 -0.7035 3.7468 28 6 1.5305 0.0008 2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 -1.1527 33 1 1.5145 -2.4707 -6.2290 34 1 3.9252 -2.5311 -6.7066 35 1 5.5199 -1.4381 -5.1880 36 1 3.1301 -0.7216 1.2488 37 1 0.4408 -2.1652 1.2741 38 1 1.8742 -2.6712 0.3470 39 1 3.1565 -2.9725 2.4138 40 1 1.6354 -3.8905 2.5409 41 1 2.3321 -1.1281 7.2076 42 1 3.1562 -0.6043 3.7812 43 1 1.6348 -0.2535 4.6385 44 1 1.8742 1.0351 2.4868 45 1 0.4407 -0.0203 2.5118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997846246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:35 Heat of formation + Delta-G solvation = -84.147308 kcal Electronic energy + Delta-G solvation = -29695.771633 eV Core-core repulsion = 25349.551341 eV Total energy + Delta-G solvation = -4346.220291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.44424 -49.41742 -40.27538 -38.92877 -37.91698 -35.33421 -33.03130 -31.94401 -30.90064 -30.87945 -29.75907 -28.81618 -25.56197 -24.77598 -23.33331 -23.21279 -22.35608 -21.06789 -20.36037 -18.84858 -18.62163 -17.94193 -17.73248 -16.66524 -16.59334 -16.09108 -15.92500 -15.70919 -15.70865 -14.89261 -14.81609 -14.64155 -14.35770 -14.09778 -13.80752 -13.58328 -13.25566 -13.08817 -12.74374 -12.53901 -12.48115 -12.38183 -12.31988 -12.13954 -11.66450 -11.41360 -11.24429 -10.91248 -10.70658 -10.46326 -10.25442 -10.18796 -10.10141 -9.88885 -9.56964 -9.52015 -9.41120 -9.29246 -9.06955 -8.45686 -6.65998 -5.78126 -3.20716 0.28069 0.44561 2.30040 2.73262 2.99481 3.30350 3.38574 3.44582 3.45723 3.86251 4.11384 4.32351 4.36232 4.50174 4.57281 5.00720 5.13796 5.15306 5.23546 5.32310 5.36980 5.39892 5.44931 5.52413 5.59300 5.66038 5.72310 5.84202 6.01628 6.10359 6.14163 6.16451 6.27383 6.37672 6.40120 6.51299 6.63263 6.72873 6.77255 6.81616 6.98844 7.34861 7.40150 7.67352 7.79852 8.00543 8.46110 9.22329 9.85845 10.42822 11.30337 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.002533 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.106052 B =11052.107184 C =11182.813478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.086 0.914 4 N -0.705 5.705 5 C 0.564 3.436 6 O -0.523 6.523 7 C -0.198 4.198 8 C 0.163 3.837 9 F -0.120 7.120 10 C -0.166 4.166 11 C -0.046 4.046 12 C -0.166 4.166 13 C 0.164 3.836 14 F -0.119 7.119 15 C -0.085 4.085 16 C -0.129 4.129 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -1.281 -25.397 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.356 5.356 5 C 0.347 3.653 6 O -0.399 6.399 7 C -0.203 4.203 8 C 0.143 3.857 9 F -0.098 7.098 10 C -0.185 4.185 11 C -0.065 4.065 12 C -0.184 4.184 13 C 0.144 3.856 14 F -0.097 7.097 15 C -0.104 4.104 16 C -0.169 4.169 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.641 -0.333 -25.166 25.307 hybrid contribution -0.501 -0.547 0.897 1.164 sum 2.139 -0.880 -24.270 24.380 Atomic orbital electron populations 1.22228 0.95024 1.02536 1.02257 1.21239 0.94491 0.97055 0.83162 0.89605 1.46238 1.65745 1.14273 1.09389 1.17733 0.78177 0.86602 0.82753 1.90826 1.49400 1.15038 1.84599 1.20048 0.93134 1.06860 1.00270 1.17329 0.77479 0.96734 0.94155 1.91593 1.30370 1.94231 1.93617 1.21197 0.97307 1.02761 0.97230 1.21007 0.91492 0.95508 0.98454 1.21207 1.02169 1.00867 0.94205 1.17342 0.84752 0.94112 0.89425 1.91602 1.67333 1.80698 1.70092 1.21331 1.00129 0.95771 0.93164 1.22128 1.01300 0.94991 0.98439 1.20871 0.96156 0.94279 0.86735 1.44027 1.66798 1.05080 1.15497 1.19133 1.19104 1.14432 0.85599 0.91817 1.25042 0.97063 1.00450 0.97055 1.70017 1.27840 1.37498 1.19381 0.86381 0.81232 0.78085 0.81138 1.20919 1.21641 1.21038 1.20760 0.96397 0.83696 0.94537 1.22264 1.01042 0.98013 0.96012 0.91977 0.92920 0.90797 0.76254 0.83280 0.83324 0.83242 0.91309 0.91590 0.93898 0.96668 0.92889 0.93578 0.96524 0.89416 0.93113 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.78 37.16 0.33 -2.01 16 2 C 0.14 2.13 2.40 -67.93 -0.16 1.96 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 N -0.71 -9.51 4.99 -54.84 -0.27 -9.78 16 5 C 0.56 8.28 6.51 -12.46 -0.08 8.19 16 6 O -0.52 -9.53 16.77 5.29 0.09 -9.44 16 7 C -0.20 -2.31 5.64 -104.86 -0.59 -2.90 16 8 C 0.16 1.62 7.29 -38.97 -0.28 1.34 16 9 F -0.12 -1.38 16.83 2.25 0.04 -1.35 16 10 C -0.17 -1.06 10.01 -39.57 -0.40 -1.45 16 11 C -0.05 -0.22 10.03 -39.54 -0.40 -0.62 16 12 C -0.17 -1.07 10.01 -39.56 -0.40 -1.47 16 13 C 0.16 1.66 7.29 -38.97 -0.28 1.37 16 14 F -0.12 -1.42 16.83 2.25 0.04 -1.38 16 15 C -0.08 -1.37 2.14 -90.58 -0.19 -1.56 16 16 C -0.13 -2.10 4.81 -26.60 -0.13 -2.23 16 17 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 18 N -0.59 -14.57 2.99 -172.32 -0.52 -15.08 16 19 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 20 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -26.16 11.19 55.49 0.62 -25.53 16 23 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 28 C -0.13 -2.48 4.97 -26.61 -0.13 -2.61 16 29 H 0.06 0.87 6.46 -51.93 -0.34 0.53 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.06 6.46 -51.93 -0.34 0.73 16 32 H 0.40 4.69 6.83 -40.82 -0.28 4.41 16 33 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.15 0.21 8.06 -52.48 -0.42 -0.21 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.11 6.51 -51.93 -0.34 0.78 16 38 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.16 6.51 -51.93 -0.34 0.83 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -32.45 368.60 -8.49 -40.94 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.01 Total: 1.54 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.99 Total: -2.07 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.17 Total: -50.40 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.45 -8.49 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.208 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds