Wall clock time and date at job start Tue Mar 31 2020 21:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46839 * 2 1 4 4 N 1.46498 * 109.46807 * 240.00171 * 2 1 3 5 5 C 1.34772 * 120.00082 * 85.00293 * 4 2 1 6 6 O 1.21583 * 120.00261 * 359.97438 * 5 4 2 7 7 C 1.47552 * 119.99979 * 179.97438 * 5 4 2 8 8 C 1.39901 * 120.18863 * 89.71747 * 7 5 4 9 9 F 1.35101 * 120.09776 * 359.97438 * 8 7 5 10 10 C 1.38220 * 119.80143 * 179.79072 * 8 7 5 11 11 C 1.38300 * 120.19088 * 0.48542 * 10 8 7 12 12 C 1.38299 * 120.38788 * 359.74722 * 11 10 8 13 13 C 1.38224 * 120.18471 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.09281 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47442 * 120.00129 * 2 1 3 16 16 C 1.53046 * 109.45898 * 60.02365 * 15 2 1 17 17 C 1.53200 * 109.31151 * 178.60336 * 16 15 2 18 18 N 1.46921 * 108.76355 * 54.65594 * 17 16 15 19 19 C 1.36936 * 120.62950 * 126.40401 * 18 17 16 20 20 H 1.07997 * 120.00293 * 331.82870 * 19 18 17 21 21 C 1.38816 * 120.00068 * 151.82112 * 19 18 17 22 22 N 1.31618 * 120.00138 * 343.08373 * 21 19 18 23 23 Si 1.86804 * 119.99962 * 163.08230 * 21 19 18 24 24 H 1.48500 * 109.47167 * 60.00189 * 23 21 19 25 25 H 1.48504 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.46911 * 300.00067 * 23 21 19 27 27 C 1.46932 * 118.74161 * 306.38617 * 18 17 16 28 28 C 1.53042 * 109.45878 * 299.97212 * 15 2 1 29 29 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47072 * 59.99746 * 1 2 3 31 31 H 1.08996 * 109.46739 * 299.99651 * 1 2 3 32 32 H 0.97006 * 120.00221 * 264.99552 * 4 2 1 33 33 H 1.08007 * 119.90261 * 180.25378 * 10 8 7 34 34 H 1.08009 * 119.80580 * 179.76429 * 11 10 8 35 35 H 1.07999 * 119.91113 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.46437 * 179.97438 * 15 2 1 37 37 H 1.08991 * 109.49817 * 298.56627 * 16 15 2 38 38 H 1.08993 * 109.49493 * 58.66906 * 16 15 2 39 39 H 1.09003 * 109.59423 * 294.86932 * 17 16 15 40 40 H 1.08994 * 109.69836 * 174.51084 * 17 16 15 41 41 H 0.96992 * 120.00347 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.57974 * 293.81995 * 27 18 17 43 43 H 1.09001 * 109.70303 * 173.47187 * 27 18 17 44 44 H 1.08998 * 109.49891 * 301.33614 * 28 15 2 45 45 H 1.09003 * 109.49561 * 61.39959 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8576 1.1614 -2.4118 7 6 2.6394 -0.7136 -3.5618 8 6 1.7390 -1.3427 -4.4283 9 9 0.4142 -1.3161 -4.1648 10 6 2.2085 -1.9881 -5.5567 11 6 3.5648 -2.0218 -5.8250 12 6 4.4623 -1.4067 -4.9712 13 6 4.0097 -0.7528 -3.8407 14 9 4.8881 -0.1530 -3.0077 15 6 2.0401 -0.7212 1.2492 16 6 1.5304 -2.1643 1.2486 17 6 2.0715 -2.8933 2.4826 18 7 1.7087 -2.1259 3.6818 19 6 1.0456 -2.7251 4.7193 20 1 0.3980 -3.5685 4.5310 21 6 1.2059 -2.2483 6.0131 22 7 2.2203 -1.4615 6.3036 23 14 -0.0180 -2.7235 7.3419 24 1 -0.0265 -4.1998 7.5021 25 1 0.3737 -2.0880 8.6258 26 1 -1.3743 -2.2598 6.9542 27 6 2.0713 -0.7035 3.7468 28 6 1.5305 0.0008 2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 -1.1527 33 1 1.5145 -2.4707 -6.2290 34 1 3.9252 -2.5311 -6.7066 35 1 5.5199 -1.4381 -5.1880 36 1 3.1301 -0.7216 1.2488 37 1 0.4408 -2.1652 1.2741 38 1 1.8742 -2.6712 0.3470 39 1 3.1565 -2.9725 2.4138 40 1 1.6354 -3.8905 2.5409 41 1 2.3321 -1.1281 7.2076 42 1 3.1562 -0.6043 3.7812 43 1 1.6348 -0.2535 4.6385 44 1 1.8742 1.0351 2.4868 45 1 0.4407 -0.0203 2.5118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997846246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:34 Heat of formation + Delta-G solvation = -103.634610 kcal Electronic energy + Delta-G solvation = -29696.616665 eV Core-core repulsion = 25349.551341 eV Total energy + Delta-G solvation = -4347.065324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.20705 -50.18211 -41.38179 -39.87986 -39.13656 -36.89359 -34.58946 -33.21064 -32.17379 -31.44539 -31.39297 -30.25958 -27.20100 -25.84657 -24.63744 -23.94022 -23.90985 -22.42024 -21.68131 -20.26175 -19.53384 -18.87791 -18.50754 -18.44626 -17.59085 -16.96983 -16.78583 -16.77795 -16.49097 -16.36090 -15.94193 -15.65729 -15.57635 -15.47205 -15.36604 -15.08478 -14.71510 -14.17895 -14.14168 -13.86144 -13.70503 -13.13326 -13.09590 -12.99139 -12.97693 -12.95552 -12.91931 -12.60603 -12.51087 -12.19369 -11.98053 -11.71280 -11.69059 -11.35903 -11.12391 -11.00697 -10.52358 -10.29879 -10.21464 -9.88707 -8.67186 -7.86803 -5.32189 -0.34132 -0.12819 1.21289 1.46565 1.49290 1.55737 1.90634 2.25978 2.51633 2.63799 3.26375 3.27587 3.34435 3.65147 3.72250 3.73245 3.78804 3.82107 3.99474 4.12650 4.31134 4.35184 4.51946 4.56251 4.60266 4.62549 4.67966 4.74608 4.87717 4.89805 4.90276 4.97880 4.99854 5.09619 5.12317 5.18020 5.23438 5.25883 5.35856 5.40493 5.55936 5.63429 5.66272 5.78043 6.26525 6.39940 6.91639 7.15702 7.87624 8.39330 9.19442 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.002533 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.106052 B =11052.107184 C =11182.813478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.072 0.928 4 N -0.698 5.698 5 C 0.562 3.438 6 O -0.569 6.569 7 C -0.224 4.224 8 C 0.141 3.859 9 F -0.137 7.137 10 C -0.151 4.151 11 C -0.025 4.025 12 C -0.152 4.152 13 C 0.139 3.861 14 F -0.139 7.139 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.067 0.933 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.279 1.279 27 C 0.179 3.821 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.179 0.821 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.012 0.988 40 H 0.056 0.944 41 H 0.249 0.751 42 H -0.007 1.007 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -3.227 -28.703 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.090 0.910 4 N -0.349 5.349 5 C 0.348 3.652 6 O -0.448 6.448 7 C -0.229 4.229 8 C 0.121 3.879 9 F -0.115 7.115 10 C -0.170 4.170 11 C -0.043 4.043 12 C -0.171 4.171 13 C 0.119 3.881 14 F -0.117 7.117 15 C -0.093 4.093 16 C -0.155 4.155 17 C 0.016 3.984 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.205 1.205 27 C 0.053 3.947 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.197 0.803 34 H 0.214 0.786 35 H 0.195 0.805 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.011 0.989 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.578 -2.323 -28.504 28.715 hybrid contribution -0.406 -0.007 1.820 1.864 sum 2.172 -2.329 -26.684 26.874 Atomic orbital electron populations 1.22162 0.94422 1.02884 1.01920 1.20966 0.94782 0.96221 0.83052 0.91012 1.46136 1.65284 1.14623 1.08842 1.18256 0.77080 0.86167 0.83713 1.90786 1.51431 1.17087 1.85476 1.19912 0.94334 1.08852 0.99802 1.17664 0.76636 0.98167 0.95427 1.91547 1.31493 1.94540 1.93922 1.21626 0.98697 1.00933 0.95713 1.21593 0.90305 0.93537 0.98821 1.21622 1.04015 0.98973 0.92445 1.17709 0.83984 0.95670 0.90787 1.91550 1.67761 1.81399 1.71008 1.21162 0.99775 0.95727 0.92615 1.21977 1.01097 0.94536 0.97859 1.21048 0.96130 0.94587 0.86668 1.44300 1.66927 1.05794 1.16288 1.19490 1.18983 1.14276 0.86472 0.91497 1.25799 0.98679 1.01015 0.99188 1.70177 1.29607 1.39048 1.19407 0.85367 0.79074 0.77983 0.78189 1.20023 1.22184 1.20465 1.20543 0.94751 0.83926 0.95474 1.22060 1.00847 0.98391 0.94822 0.91213 0.93505 0.90877 0.75063 0.80349 0.78572 0.80505 0.91714 0.91589 0.90311 0.97009 0.92576 0.94167 0.98936 0.92865 0.91885 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 8.78 71.98 0.63 -3.76 16 2 C 0.15 4.51 2.40 44.99 0.11 4.61 16 3 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 4 N -0.70 -18.52 4.99 -445.69 -2.23 -20.75 16 5 C 0.56 16.72 6.51 86.70 0.56 17.29 16 6 O -0.57 -21.48 16.77 -3.98 -0.07 -21.55 16 7 C -0.22 -5.09 5.64 -20.02 -0.11 -5.20 16 8 C 0.14 2.58 7.29 22.67 0.17 2.74 16 9 F -0.14 -3.06 16.83 44.97 0.76 -2.30 16 10 C -0.15 -1.33 10.01 22.28 0.22 -1.10 16 11 C -0.03 -0.11 10.03 22.30 0.22 0.11 16 12 C -0.15 -1.41 10.01 22.28 0.22 -1.19 16 13 C 0.14 2.63 7.29 22.67 0.17 2.79 16 14 F -0.14 -3.31 16.83 44.97 0.76 -2.55 16 15 C -0.07 -2.34 2.14 -10.77 -0.02 -2.37 16 16 C -0.12 -3.58 4.81 30.68 0.15 -3.44 16 17 C 0.14 5.65 6.52 86.37 0.56 6.21 16 18 N -0.61 -30.46 2.99 -699.09 -2.09 -32.55 16 19 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 20 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 21 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 22 N -0.94 -56.01 11.19 21.65 0.24 -55.77 16 23 Si 0.97 45.11 29.59 68.60 2.03 47.14 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 C 0.18 8.70 5.30 86.36 0.46 9.16 16 28 C -0.12 -4.56 4.97 30.67 0.15 -4.41 16 29 H 0.07 1.85 6.46 -2.39 -0.02 1.83 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.06 6.46 -2.39 -0.02 2.05 16 32 H 0.41 9.07 6.83 -92.70 -0.63 8.44 16 33 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 34 H 0.20 -0.89 8.06 -2.91 -0.02 -0.91 16 35 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.10 6.51 -2.39 -0.02 2.08 16 38 H 0.08 1.90 6.46 -2.39 -0.02 1.88 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.05 2.94 6.07 -2.39 -0.01 2.93 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.06 2.36 6.51 -2.39 -0.02 2.34 16 Total: -1.00 -75.00 368.60 4.51 -70.49 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.40 Total: 12.47 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 4.71 Total: 5.37 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -4.08 Total: -109.07 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 1.51 Total: -4.85 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.00 4.51 -70.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.145 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds