Wall clock time and date at job start Tue Mar 31 2020 21:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47356 * 2 1 4 4 C 1.50700 * 109.46824 * 119.99795 * 2 1 3 5 5 O 1.21280 * 120.00349 * 34.46278 * 4 2 1 6 6 N 1.34784 * 119.99795 * 214.45843 * 4 2 1 7 7 C 1.46923 * 120.63274 * 354.53820 * 6 4 2 8 8 C 1.53193 * 108.77885 * 233.61321 * 7 6 4 9 9 C 1.53043 * 109.31001 * 305.36525 * 8 7 6 10 10 C 1.53042 * 109.53678 * 61.36475 * 9 8 7 11 11 H 1.08991 * 109.49848 * 58.61867 * 10 9 8 12 12 N 1.46506 * 109.49278 * 178.68470 * 10 9 8 13 13 C 1.36932 * 119.99979 * 274.93426 * 12 10 9 14 14 H 1.08006 * 120.00007 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00198 * 180.02562 * 13 12 10 16 16 N 1.31621 * 120.00217 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00279 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47196 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46996 * 300.00250 * 17 15 13 20 20 H 1.48504 * 109.46653 * 60.00057 * 17 15 13 21 21 C 1.46937 * 120.60353 * 174.56619 * 6 4 2 22 22 C 1.50697 * 109.47386 * 239.99650 * 2 1 3 23 23 C 1.38423 * 120.02385 * 299.72739 * 22 2 1 24 24 F 1.35096 * 120.01426 * 359.97438 * 23 22 2 25 25 C 1.38473 * 119.97004 * 179.74659 * 23 22 2 26 26 C 1.38203 * 120.02921 * 0.52648 * 25 23 22 27 27 C 1.38205 * 120.05149 * 359.74700 * 26 25 23 28 28 C 1.38413 * 120.02651 * 120.00026 * 22 2 1 29 29 F 1.35103 * 120.01053 * 0.02562 * 28 22 2 30 30 H 1.09005 * 109.47318 * 65.03055 * 1 2 3 31 31 H 1.08996 * 109.47253 * 185.02718 * 1 2 3 32 32 H 1.09002 * 109.47033 * 305.02782 * 1 2 3 33 33 H 1.09001 * 109.58843 * 113.81945 * 7 6 4 34 34 H 1.09005 * 109.58116 * 353.40118 * 7 6 4 35 35 H 1.08992 * 109.49544 * 185.41251 * 8 7 6 36 36 H 1.08996 * 109.52141 * 65.33001 * 8 7 6 37 37 H 1.09001 * 109.45976 * 301.34446 * 9 8 7 38 38 H 1.08996 * 109.46024 * 181.38828 * 9 8 7 39 39 H 0.96999 * 119.99666 * 94.93709 * 12 10 9 40 40 H 0.96994 * 120.00480 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.61601 * 6.61508 * 21 6 4 42 42 H 1.08997 * 109.55880 * 246.19338 * 21 6 4 43 43 H 1.08003 * 119.98361 * 180.27263 * 25 23 22 44 44 H 1.08001 * 119.97780 * 179.72942 * 26 25 23 45 45 H 1.07998 * 119.99381 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.4179 -1.6553 1.6785 6 7 3.1643 -0.2957 1.8332 7 6 3.9831 0.7686 1.2369 8 6 5.4228 0.2638 1.0978 9 6 5.9216 -0.2248 2.4597 10 6 5.0468 -1.3856 2.9388 11 1 5.0805 -2.1926 2.2070 12 7 5.5443 -1.8730 4.2277 13 6 6.5567 -2.7942 4.2668 14 1 6.9882 -3.1618 3.3474 15 6 7.0277 -3.2565 5.4879 16 7 6.5016 -2.8090 6.6084 17 14 8.4083 -4.5137 5.5413 18 1 8.7257 -4.8407 6.9546 19 1 7.9829 -5.7465 4.8309 20 1 9.6142 -3.9529 4.8807 21 6 3.6027 -0.9002 3.0986 22 6 2.0324 -0.7105 -1.2304 23 6 1.7030 -2.0374 -1.4470 24 9 0.9313 -2.6964 -0.5552 25 6 2.1608 -2.6876 -2.5806 26 6 2.9554 -2.0155 -3.4900 27 6 3.2896 -0.6923 -3.2719 28 6 2.8282 -0.0384 -2.1418 29 9 3.1554 1.2550 -1.9286 30 1 -0.3634 0.4338 -0.9316 31 1 -0.3633 -1.0237 0.0900 32 1 -0.3633 0.5899 0.8415 33 1 3.9648 1.6479 1.8808 34 1 3.5891 1.0251 0.2535 35 1 6.0603 1.0750 0.7464 36 1 5.4529 -0.5584 0.3829 37 1 5.8683 0.5915 3.1801 38 1 6.9542 -0.5617 2.3687 39 1 5.1565 -1.5432 5.0533 40 1 6.8304 -3.1322 7.4617 41 1 2.9583 -1.7446 3.3434 42 1 3.5528 -0.1572 3.8945 43 1 1.9003 -3.7216 -2.7520 44 1 3.3157 -2.5247 -4.3716 45 1 3.9109 -0.1682 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999710378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:36 Heat of formation + Delta-G solvation = -86.123660 kcal Electronic energy + Delta-G solvation = -30658.858132 eV Core-core repulsion = 26312.552140 eV Total energy + Delta-G solvation = -4346.305992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.38611 -49.02431 -40.35270 -38.96736 -37.36991 -34.67151 -34.20915 -32.12465 -31.21590 -30.59100 -29.82959 -28.40673 -25.72426 -24.59047 -23.69433 -23.15723 -22.17598 -22.02587 -19.94589 -18.83169 -18.31965 -17.98846 -17.17573 -16.78048 -16.32720 -16.29532 -15.78650 -15.44278 -15.40609 -15.11363 -14.70731 -14.64697 -14.10404 -14.01295 -13.82234 -13.40057 -13.25136 -13.04835 -12.98628 -12.87275 -12.64384 -12.39530 -12.32419 -12.22576 -12.01737 -11.71146 -11.18057 -10.97104 -10.90989 -10.88320 -10.60723 -10.39957 -10.33573 -10.09762 -9.81342 -9.65375 -9.08754 -9.00969 -8.89701 -8.36740 -6.97791 -5.76461 -3.06059 0.60480 0.67534 2.66676 2.99212 3.15374 3.44630 3.49038 3.50054 3.59242 4.11378 4.15291 4.27062 4.47161 4.54031 4.59546 4.80591 4.88020 4.89118 5.10074 5.18013 5.32192 5.38490 5.49590 5.53068 5.54262 5.58523 5.60983 5.68768 5.72234 5.74977 5.77681 5.82707 5.84286 6.04969 6.08041 6.17280 6.26580 6.40538 6.44416 6.56339 6.72434 6.89280 7.05905 7.57908 7.69679 8.31090 8.41671 9.52592 10.07852 10.43314 11.46033 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003273 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.520098 B = 8553.952040 C = 8638.971632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 H 0.106 0.894 4 C 0.516 3.484 5 O -0.522 6.522 6 N -0.602 5.602 7 C 0.102 3.898 8 C -0.131 4.131 9 C -0.136 4.136 10 C 0.169 3.831 11 H 0.049 0.951 12 N -0.721 5.721 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.291 1.291 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.106 3.894 22 C -0.152 4.152 23 C 0.147 3.853 24 F -0.108 7.108 25 C -0.166 4.166 26 C -0.060 4.060 27 C -0.166 4.166 28 C 0.135 3.865 29 F -0.127 7.127 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 9.101 -22.688 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 H 0.124 0.876 4 C 0.302 3.698 5 O -0.397 6.397 6 N -0.336 5.336 7 C -0.021 4.021 8 C -0.170 4.170 9 C -0.177 4.177 10 C 0.058 3.942 11 H 0.067 0.933 12 N -0.362 5.362 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.016 4.016 22 C -0.154 4.154 23 C 0.128 3.872 24 F -0.085 7.085 25 C -0.185 4.185 26 C -0.078 4.078 27 C -0.184 4.184 28 C 0.115 3.885 29 F -0.106 7.106 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.183 8.468 -22.372 25.998 hybrid contribution 0.846 -0.315 0.541 1.052 sum -9.337 8.153 -21.832 25.105 Atomic orbital electron populations 1.21750 0.91084 1.04509 1.02243 1.20227 0.98764 1.00184 0.90043 0.87601 1.20238 0.80802 0.84120 0.84610 1.90726 1.56978 1.27047 1.64986 1.48113 1.23057 1.37985 1.24433 1.21880 0.91833 0.89961 0.98430 1.21901 0.94788 1.00838 0.99443 1.22279 1.01268 0.99811 0.94350 1.20460 0.89701 0.93886 0.90133 0.93338 1.42299 1.42231 1.50047 1.01605 1.19156 1.09837 1.15619 0.92409 0.91270 1.24734 1.00130 1.00546 0.95312 1.69648 1.44699 1.46980 0.96706 0.86271 0.81988 0.81419 0.76524 1.21648 1.21233 1.21274 1.22016 0.97387 0.98650 0.83590 1.19538 1.03318 0.94329 0.98236 1.17302 0.92421 0.89239 0.88276 1.91650 1.71269 1.79823 1.65804 1.21290 1.01240 1.01840 0.94126 1.20875 0.95103 0.93187 0.98682 1.21165 1.03617 0.96015 0.97648 1.17143 0.97192 0.79072 0.95068 1.91497 1.90689 1.33858 1.94538 0.91778 0.90234 0.91484 0.91272 0.90230 0.91286 0.92097 0.92421 0.91546 0.78191 0.93410 0.88861 0.91630 0.83816 0.83829 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.66 37.16 0.32 -1.20 16 2 C -0.07 -0.86 2.03 -92.93 -0.19 -1.05 16 3 H 0.11 1.11 5.34 -51.93 -0.28 0.83 16 4 C 0.52 8.24 6.31 -10.98 -0.07 8.17 16 5 O -0.52 -10.16 13.67 5.56 0.08 -10.08 16 6 N -0.60 -9.46 2.97 -172.76 -0.51 -9.97 16 7 C 0.10 1.29 6.15 -3.71 -0.02 1.27 16 8 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 9 C -0.14 -2.40 5.47 -26.69 -0.15 -2.55 16 10 C 0.17 3.48 2.92 -67.81 -0.20 3.28 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 N -0.72 -18.32 5.12 -53.31 -0.27 -18.60 16 13 C -0.24 -6.71 9.93 -15.06 -0.15 -6.85 16 14 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 17 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.11 1.97 5.91 -3.71 -0.02 1.94 16 22 C -0.15 -1.76 4.72 -104.49 -0.49 -2.25 16 23 C 0.15 1.79 6.81 -39.43 -0.27 1.52 16 24 F -0.11 -1.59 13.08 2.25 0.03 -1.56 16 25 C -0.17 -1.52 10.02 -39.51 -0.40 -1.92 16 26 C -0.06 -0.43 10.04 -39.61 -0.40 -0.83 16 27 C -0.17 -1.28 10.03 -39.50 -0.40 -1.67 16 28 C 0.13 1.32 7.01 -39.43 -0.28 1.05 16 29 F -0.13 -1.23 14.76 2.25 0.03 -1.20 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.02 6.02 -51.93 -0.31 0.70 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.88 3.74 -51.93 -0.19 0.68 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.38 10.31 7.80 -40.82 -0.32 9.99 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.09 1.95 7.00 -51.93 -0.36 1.58 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -32.91 364.55 -8.50 -41.41 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.08 Total: 7.99 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.96 Total: -3.45 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.06 Total: -56.16 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.06 Total: -2.76 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.91 -8.50 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999710378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.717 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds