Wall clock time and date at job start Tue Mar 31 2020 21:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47356 * 2 1 4 4 C 1.50700 * 109.46824 * 119.99795 * 2 1 3 5 5 O 1.21280 * 120.00349 * 34.46278 * 4 2 1 6 6 N 1.34784 * 119.99795 * 214.45843 * 4 2 1 7 7 C 1.46923 * 120.63274 * 354.53820 * 6 4 2 8 8 C 1.53193 * 108.77885 * 233.61321 * 7 6 4 9 9 C 1.53043 * 109.31001 * 305.36525 * 8 7 6 10 10 C 1.53042 * 109.53678 * 61.36475 * 9 8 7 11 11 H 1.08991 * 109.49848 * 58.61867 * 10 9 8 12 12 N 1.46506 * 109.49278 * 178.68470 * 10 9 8 13 13 C 1.36932 * 119.99979 * 274.93426 * 12 10 9 14 14 H 1.08006 * 120.00007 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00198 * 180.02562 * 13 12 10 16 16 N 1.31621 * 120.00217 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00279 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47196 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46996 * 300.00250 * 17 15 13 20 20 H 1.48504 * 109.46653 * 60.00057 * 17 15 13 21 21 C 1.46937 * 120.60353 * 174.56619 * 6 4 2 22 22 C 1.50697 * 109.47386 * 239.99650 * 2 1 3 23 23 C 1.38423 * 120.02385 * 299.72739 * 22 2 1 24 24 F 1.35096 * 120.01426 * 359.97438 * 23 22 2 25 25 C 1.38473 * 119.97004 * 179.74659 * 23 22 2 26 26 C 1.38203 * 120.02921 * 0.52648 * 25 23 22 27 27 C 1.38205 * 120.05149 * 359.74700 * 26 25 23 28 28 C 1.38413 * 120.02651 * 120.00026 * 22 2 1 29 29 F 1.35103 * 120.01053 * 0.02562 * 28 22 2 30 30 H 1.09005 * 109.47318 * 65.03055 * 1 2 3 31 31 H 1.08996 * 109.47253 * 185.02718 * 1 2 3 32 32 H 1.09002 * 109.47033 * 305.02782 * 1 2 3 33 33 H 1.09001 * 109.58843 * 113.81945 * 7 6 4 34 34 H 1.09005 * 109.58116 * 353.40118 * 7 6 4 35 35 H 1.08992 * 109.49544 * 185.41251 * 8 7 6 36 36 H 1.08996 * 109.52141 * 65.33001 * 8 7 6 37 37 H 1.09001 * 109.45976 * 301.34446 * 9 8 7 38 38 H 1.08996 * 109.46024 * 181.38828 * 9 8 7 39 39 H 0.96999 * 119.99666 * 94.93709 * 12 10 9 40 40 H 0.96994 * 120.00480 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.61601 * 6.61508 * 21 6 4 42 42 H 1.08997 * 109.55880 * 246.19338 * 21 6 4 43 43 H 1.08003 * 119.98361 * 180.27263 * 25 23 22 44 44 H 1.08001 * 119.97780 * 179.72942 * 26 25 23 45 45 H 1.07998 * 119.99381 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.4179 -1.6553 1.6785 6 7 3.1643 -0.2957 1.8332 7 6 3.9831 0.7686 1.2369 8 6 5.4228 0.2638 1.0978 9 6 5.9216 -0.2248 2.4597 10 6 5.0468 -1.3856 2.9388 11 1 5.0805 -2.1926 2.2070 12 7 5.5443 -1.8730 4.2277 13 6 6.5567 -2.7942 4.2668 14 1 6.9882 -3.1618 3.3474 15 6 7.0277 -3.2565 5.4879 16 7 6.5016 -2.8090 6.6084 17 14 8.4083 -4.5137 5.5413 18 1 8.7257 -4.8407 6.9546 19 1 7.9829 -5.7465 4.8309 20 1 9.6142 -3.9529 4.8807 21 6 3.6027 -0.9002 3.0986 22 6 2.0324 -0.7105 -1.2304 23 6 1.7030 -2.0374 -1.4470 24 9 0.9313 -2.6964 -0.5552 25 6 2.1608 -2.6876 -2.5806 26 6 2.9554 -2.0155 -3.4900 27 6 3.2896 -0.6923 -3.2719 28 6 2.8282 -0.0384 -2.1418 29 9 3.1554 1.2550 -1.9286 30 1 -0.3634 0.4338 -0.9316 31 1 -0.3633 -1.0237 0.0900 32 1 -0.3633 0.5899 0.8415 33 1 3.9648 1.6479 1.8808 34 1 3.5891 1.0251 0.2535 35 1 6.0603 1.0750 0.7464 36 1 5.4529 -0.5584 0.3829 37 1 5.8683 0.5915 3.1801 38 1 6.9542 -0.5617 2.3687 39 1 5.1565 -1.5432 5.0533 40 1 6.8304 -3.1322 7.4617 41 1 2.9583 -1.7446 3.3434 42 1 3.5528 -0.1572 3.8945 43 1 1.9003 -3.7216 -2.7520 44 1 3.3157 -2.5247 -4.3716 45 1 3.9109 -0.1682 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999710378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:35 Heat of formation + Delta-G solvation = -105.862850 kcal Electronic energy + Delta-G solvation = -30659.714088 eV Core-core repulsion = 26312.552140 eV Total energy + Delta-G solvation = -4347.161948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.08967 -49.96805 -41.55411 -39.79478 -38.76743 -36.27102 -35.36248 -33.77695 -32.81764 -31.27386 -30.65597 -30.13069 -26.94812 -26.11082 -25.10997 -23.88630 -23.45542 -23.17299 -21.40520 -20.04834 -19.21576 -19.09057 -18.96702 -17.75162 -17.33396 -17.13728 -16.74767 -16.61122 -16.51986 -16.32471 -16.05287 -15.62105 -15.46235 -15.34672 -15.23848 -14.81171 -14.69053 -14.50265 -14.07469 -13.76252 -13.69345 -13.61346 -13.25177 -13.02896 -12.94601 -12.90525 -12.85462 -12.58876 -12.37796 -12.22180 -12.16796 -11.91494 -11.88008 -11.75242 -11.66147 -10.94810 -10.93253 -9.90606 -9.75438 -9.72060 -9.06252 -7.97454 -5.27616 -0.10352 -0.03316 1.44225 1.46583 1.48204 1.54160 1.84881 2.36320 2.54406 2.86510 3.30744 3.32542 3.35660 3.43353 3.61938 3.71376 3.86026 3.95030 4.00708 4.01402 4.12728 4.15278 4.21805 4.26611 4.30007 4.52861 4.65860 4.69446 4.73198 4.76888 4.80601 4.81949 4.86092 4.99952 5.00665 5.05398 5.09587 5.19668 5.20370 5.33937 5.38374 5.46876 5.53927 5.76361 6.23563 6.33778 7.06362 7.29681 8.01315 8.26914 9.25652 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003273 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.520098 B = 8553.952040 C = 8638.971632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 H 0.127 0.873 4 C 0.510 3.490 5 O -0.566 6.566 6 N -0.603 5.603 7 C 0.100 3.900 8 C -0.121 4.121 9 C -0.126 4.126 10 C 0.169 3.831 11 H 0.025 0.975 12 N -0.735 5.735 13 C -0.243 4.243 14 H 0.071 0.929 15 C -0.071 4.071 16 N -0.968 5.968 17 Si 0.973 3.027 18 H -0.293 1.293 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.119 3.881 22 C -0.168 4.168 23 C 0.110 3.890 24 F -0.135 7.135 25 C -0.169 4.169 26 C -0.048 4.048 27 C -0.155 4.155 28 C 0.129 3.871 29 F -0.125 7.125 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.156 0.844 44 H 0.183 0.817 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 10.704 -26.142 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.083 4.083 3 H 0.145 0.855 4 C 0.298 3.702 5 O -0.445 6.445 6 N -0.336 5.336 7 C -0.021 4.021 8 C -0.159 4.159 9 C -0.166 4.166 10 C 0.060 3.940 11 H 0.044 0.956 12 N -0.375 5.375 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.264 4.264 16 N -0.618 5.618 17 Si 0.802 3.198 18 H -0.219 1.219 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.005 4.005 22 C -0.171 4.171 23 C 0.090 3.910 24 F -0.113 7.113 25 C -0.188 4.188 26 C -0.065 4.065 27 C -0.173 4.173 28 C 0.110 3.890 29 F -0.104 7.104 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.173 0.827 44 H 0.200 0.800 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.933 10.111 -25.897 29.201 hybrid contribution 0.429 -0.822 1.497 1.761 sum -8.504 9.288 -24.400 27.459 Atomic orbital electron populations 1.21741 0.90602 1.03289 1.03692 1.20203 0.99202 1.00563 0.88349 0.85504 1.21035 0.80226 0.83609 0.85281 1.90704 1.58282 1.29123 1.66358 1.48203 1.23565 1.38410 1.23425 1.22138 0.90672 0.89385 0.99929 1.21850 0.95833 1.01782 0.96479 1.22059 0.99415 0.98224 0.96916 1.20588 0.91480 0.94358 0.87580 0.95642 1.42464 1.41987 1.50131 1.02910 1.19492 1.09933 1.15530 0.92509 0.91063 1.25551 1.02907 1.02901 0.95005 1.69807 1.46381 1.48618 0.97017 0.85225 0.79352 0.79007 0.76261 1.21924 1.20743 1.19997 1.21603 0.95361 0.97955 0.85610 1.19530 1.04651 0.94370 0.98529 1.17768 0.93850 0.90060 0.89275 1.91581 1.72328 1.80420 1.67020 1.21586 1.01114 1.02603 0.93483 1.21345 0.93279 0.93003 0.98910 1.21596 1.02594 0.96136 0.96982 1.17256 0.97106 0.79195 0.95462 1.91498 1.90626 1.33667 1.94588 0.89279 0.92649 0.91144 0.89204 0.87856 0.87723 0.92621 0.92152 0.93300 0.79415 0.93898 0.92125 0.90924 0.82656 0.80005 0.80703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.66 71.98 0.62 -2.33 16 2 C -0.06 -1.45 2.03 -12.29 -0.03 -1.48 16 3 H 0.13 2.33 5.34 -2.39 -0.01 2.32 16 4 C 0.51 16.57 6.31 87.66 0.55 17.12 16 5 O -0.57 -23.40 13.67 -3.03 -0.04 -23.44 16 6 N -0.60 -18.81 2.97 -818.87 -2.43 -21.25 16 7 C 0.10 2.28 6.15 86.36 0.53 2.81 16 8 C -0.12 -2.98 6.08 30.67 0.19 -2.79 16 9 C -0.13 -4.34 5.47 30.62 0.17 -4.17 16 10 C 0.17 7.16 2.92 45.07 0.13 7.29 16 11 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 12 N -0.73 -38.66 5.12 -322.58 -1.65 -40.31 16 13 C -0.24 -13.93 9.93 84.03 0.83 -13.09 16 14 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 15 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 16 N -0.97 -60.31 13.06 21.65 0.28 -60.02 16 17 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 18 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 21 C 0.12 4.56 5.91 86.36 0.51 5.07 16 22 C -0.17 -3.68 4.72 -19.78 -0.09 -3.77 16 23 C 0.11 2.65 6.81 22.37 0.15 2.81 16 24 F -0.14 -4.27 13.08 44.97 0.59 -3.68 16 25 C -0.17 -2.82 10.02 22.32 0.22 -2.60 16 26 C -0.05 -0.50 10.04 22.25 0.22 -0.27 16 27 C -0.15 -1.73 10.03 22.32 0.22 -1.50 16 28 C 0.13 2.14 7.01 22.37 0.16 2.29 16 29 F -0.13 -1.93 14.76 44.97 0.66 -1.27 16 30 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.05 1.49 6.02 -2.39 -0.01 1.48 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 1.91 3.74 -2.38 -0.01 1.90 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.37 20.93 7.80 -92.71 -0.72 20.20 16 40 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.06 2.72 7.00 -2.38 -0.02 2.70 16 42 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 45 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -75.78 364.55 4.61 -71.17 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.31 Total: 28.12 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.87 Total: 1.67 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -3.80 Total: -121.58 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.44 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.25 Total: -4.95 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.78 4.61 -71.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999710378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds