Wall clock time and date at job start Tue Mar 31 2020 21:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46868 * 2 1 4 4 C 1.50698 * 109.47183 * 240.00510 * 2 1 3 5 5 O 1.21282 * 119.99649 * 255.34148 * 4 2 1 6 6 N 1.34776 * 120.00567 * 75.34083 * 4 2 1 7 7 C 1.46501 * 119.99991 * 183.82275 * 6 4 2 8 8 C 1.46502 * 119.99708 * 3.81733 * 6 4 2 9 9 C 1.53774 * 113.61319 * 212.19947 * 8 6 4 10 10 C 1.53963 * 87.02107 * 220.04924 * 9 8 6 11 11 N 1.46500 * 113.74000 * 139.94534 * 10 9 8 12 12 C 1.36933 * 119.99992 * 107.40802 * 11 10 9 13 13 H 1.07996 * 119.99808 * 359.97438 * 12 11 10 14 14 C 1.38808 * 120.00010 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00014 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99973 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47127 * 89.99642 * 16 14 12 18 18 H 1.48498 * 109.46706 * 209.99716 * 16 14 12 19 19 H 1.48497 * 109.47052 * 329.99548 * 16 14 12 20 20 C 1.53785 * 113.60955 * 114.59398 * 8 6 4 21 21 C 1.50697 * 109.47165 * 120.00018 * 2 1 3 22 22 C 1.38257 * 119.96263 * 59.73022 * 21 2 1 23 23 C 1.38217 * 120.06968 * 179.72964 * 22 21 2 24 24 C 1.38408 * 119.99946 * 0.53915 * 23 22 21 25 25 F 1.35103 * 120.03876 * 179.74939 * 24 23 22 26 26 C 1.38658 * 119.92833 * 359.73505 * 24 23 22 27 27 F 1.35099 * 120.03202 * 180.02562 * 26 24 23 28 28 C 1.38209 * 119.96490 * 240.00070 * 21 2 1 29 29 H 1.08992 * 109.47247 * 174.54338 * 1 2 3 30 30 H 1.08998 * 109.47554 * 294.54688 * 1 2 3 31 31 H 1.09004 * 109.46859 * 54.54712 * 1 2 3 32 32 H 1.08991 * 109.47323 * 93.55707 * 7 6 4 33 33 H 1.09003 * 109.46332 * 213.55727 * 7 6 4 34 34 H 1.09000 * 109.47230 * 333.55121 * 7 6 4 35 35 H 1.09002 * 112.85008 * 343.40022 * 8 6 4 36 36 H 1.09001 * 113.61952 * 334.57284 * 9 8 6 37 37 H 1.09003 * 113.61498 * 105.47810 * 9 8 6 38 38 H 1.08997 * 113.53389 * 270.81776 * 10 9 8 39 39 H 0.97003 * 120.00044 * 287.40253 * 11 10 9 40 40 H 0.97003 * 119.99683 * 179.97438 * 15 14 12 41 41 H 1.09005 * 113.61355 * 254.52553 * 20 8 6 42 42 H 1.08996 * 113.61842 * 25.43462 * 20 8 6 43 43 H 1.08004 * 119.96583 * 359.97438 * 22 21 2 44 44 H 1.07999 * 119.99979 * 180.27532 * 23 22 21 45 45 H 1.08003 * 120.00131 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.4851 -1.8319 -1.1409 6 7 1.9785 -0.0993 -2.4306 7 6 2.3886 -0.8198 -3.6385 8 6 1.5099 1.2854 -2.5272 9 6 0.7743 1.5965 -3.8413 10 6 1.5055 2.9514 -3.8361 11 7 1.9698 3.3761 -5.1591 12 6 1.3377 4.4019 -5.8098 13 1 0.4967 4.8975 -5.3478 14 6 1.7780 4.8047 -7.0631 15 7 2.8032 4.2009 -7.6258 16 14 0.9162 6.2045 -7.9504 17 1 1.5588 7.4924 -7.5849 18 1 1.0194 5.9986 -9.4174 19 1 -0.5147 6.2352 -7.5544 20 6 2.5950 2.2721 -2.9897 21 6 2.0323 -0.7104 1.2304 22 6 1.6933 -2.0324 1.4513 23 6 2.1574 -2.6878 2.5762 24 6 2.9532 -2.0173 3.4887 25 9 3.4031 -2.6557 4.5912 26 6 3.2886 -0.6898 3.2701 27 9 4.0658 -0.0335 4.1592 28 6 2.8269 -0.0380 2.1397 29 1 -0.3633 -1.0229 -0.0977 30 1 -0.3634 0.4269 0.9347 31 1 -0.3633 0.5961 -0.8372 32 1 1.5158 -1.2812 -4.1003 33 1 2.8449 -0.1218 -4.3404 34 1 3.1104 -1.5923 -3.3733 35 1 0.9721 1.6133 -1.6375 36 1 1.0635 0.9474 -4.6678 37 1 -0.3063 1.6821 -3.7271 38 1 0.9655 3.7353 -3.3051 39 1 2.7250 2.9307 -5.5741 40 1 3.1106 4.4822 -8.5018 41 1 2.9820 2.9023 -2.1889 42 1 3.3829 1.8081 -3.5829 43 1 1.0683 -2.5548 0.7420 44 1 1.8954 -3.7218 2.7453 45 1 3.0871 0.9961 1.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999860982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:05 Heat of formation + Delta-G solvation = -63.861891 kcal Electronic energy + Delta-G solvation = -28953.648998 eV Core-core repulsion = 24608.308349 eV Total energy + Delta-G solvation = -4345.340650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.69805 -48.77543 -40.81435 -39.26609 -38.07892 -34.69732 -34.30376 -32.96963 -31.21404 -30.00509 -29.57735 -27.36321 -25.32290 -24.97527 -24.37443 -23.57090 -22.72699 -21.86124 -19.47447 -19.00106 -18.15030 -17.78936 -17.31834 -17.09143 -16.74463 -16.52717 -16.02490 -15.53542 -15.19203 -14.92690 -14.78272 -14.72258 -14.69750 -14.25236 -14.05697 -13.65241 -13.33978 -13.14391 -13.02738 -12.85108 -12.51381 -12.30463 -12.17079 -11.99342 -11.89858 -11.83254 -11.72348 -11.39219 -11.33534 -10.98046 -10.69456 -10.55619 -10.38983 -10.12318 -9.87627 -9.61778 -9.31465 -8.98655 -8.89807 -8.54141 -7.08292 -5.87884 -3.17618 0.59877 0.72289 2.50712 2.85649 3.17787 3.36788 3.42330 3.43971 3.50179 3.98863 4.12370 4.22669 4.42359 4.51800 4.70679 4.72317 4.77975 4.85810 4.89442 4.98098 5.05472 5.25380 5.34747 5.39526 5.46220 5.47001 5.52752 5.61677 5.62246 5.71217 5.73639 5.78556 5.84719 5.90418 5.95877 6.08007 6.17181 6.18012 6.28335 6.41516 6.44754 6.66655 6.86091 7.42023 7.60368 8.08838 8.30059 9.41660 9.97505 10.31394 11.34185 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024509 B = 0.002132 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.151269 B =13127.731609 C =13540.044911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.108 0.892 4 C 0.518 3.482 5 O -0.542 6.542 6 N -0.593 5.593 7 C 0.083 3.917 8 C 0.101 3.899 9 C -0.174 4.174 10 C 0.170 3.830 11 N -0.709 5.709 12 C -0.247 4.247 13 H 0.072 0.928 14 C -0.011 4.011 15 N -0.931 5.931 16 Si 0.908 3.092 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.165 4.165 21 C -0.050 4.050 22 C -0.059 4.059 23 C -0.128 4.128 24 C 0.065 3.935 25 F -0.131 7.131 26 C 0.063 3.937 27 F -0.130 7.130 28 C -0.118 4.118 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -11.692 19.900 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 H 0.126 0.874 4 C 0.305 3.695 5 O -0.420 6.420 6 N -0.324 5.324 7 C -0.059 4.059 8 C -0.003 4.003 9 C -0.216 4.216 10 C 0.057 3.943 11 N -0.347 5.347 12 C -0.378 4.378 13 H 0.090 0.910 14 C -0.207 4.207 15 N -0.578 5.578 16 Si 0.739 3.261 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.206 4.206 21 C -0.051 4.051 22 C -0.078 4.078 23 C -0.147 4.147 24 C 0.045 3.955 25 F -0.110 7.110 26 C 0.043 3.957 27 F -0.109 7.109 28 C -0.136 4.136 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.781 -12.117 19.892 23.597 hybrid contribution 0.161 0.662 -0.409 0.795 sum -3.620 -11.455 19.483 22.889 Atomic orbital electron populations 1.21858 0.91152 1.03479 1.03608 1.20300 0.98309 1.00534 0.90304 0.87397 1.20303 0.78429 0.86334 0.84393 1.90689 1.46021 1.19430 1.85833 1.47814 1.64019 1.13887 1.06665 1.21631 1.00409 0.97275 0.86624 1.22876 0.97839 0.79644 0.99963 1.24360 0.99752 1.02201 0.95280 1.21378 0.92944 0.92249 0.87751 1.42355 1.37426 1.39920 1.14963 1.19280 1.10711 1.08995 0.98864 0.90975 1.24780 0.98359 0.99863 0.97734 1.69654 1.27454 1.43618 1.17109 0.86186 0.78909 0.82031 0.79015 1.21625 1.21736 1.20677 1.23976 0.98466 0.97690 1.00418 1.19267 0.96898 0.94237 0.94666 1.20948 0.98101 0.93455 0.95263 1.21076 0.98370 1.01239 0.94040 1.17726 1.00975 0.90021 0.86761 1.91522 1.87551 1.81421 1.50505 1.17560 0.97440 0.89807 0.90906 1.91529 1.72257 1.80532 1.66555 1.20962 0.98620 1.01394 0.92658 0.91612 0.90852 0.90689 0.92658 0.90510 0.90610 0.87154 0.89547 0.91947 0.90236 0.78043 0.93359 0.91637 0.89829 0.84094 0.83675 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.63 37.16 0.32 -0.69 16 2 C -0.07 -0.65 2.04 -92.93 -0.19 -0.84 16 3 H 0.11 0.82 6.82 -51.93 -0.35 0.46 16 4 C 0.52 6.26 6.83 -10.99 -0.08 6.18 16 5 O -0.54 -8.06 14.19 5.56 0.08 -7.98 16 6 N -0.59 -7.15 3.08 -173.00 -0.53 -7.68 16 7 C 0.08 1.02 9.07 59.85 0.54 1.57 16 8 C 0.10 1.17 3.49 -67.12 -0.23 0.94 16 9 C -0.17 -2.50 7.28 -25.83 -0.19 -2.69 16 10 C 0.17 2.90 4.48 -67.02 -0.30 2.60 16 11 N -0.71 -16.31 5.41 -52.55 -0.28 -16.59 16 12 C -0.25 -6.44 9.97 -15.06 -0.15 -6.59 16 13 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 15 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 16 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 20 C -0.17 -2.31 7.41 -25.91 -0.19 -2.51 16 21 C -0.05 -0.47 4.55 -104.63 -0.48 -0.95 16 22 C -0.06 -0.55 7.89 -39.58 -0.31 -0.87 16 23 C -0.13 -1.16 10.02 -39.53 -0.40 -1.55 16 24 C 0.07 0.69 7.31 -39.36 -0.29 0.40 16 25 F -0.13 -1.50 17.18 2.25 0.04 -1.46 16 26 C 0.06 0.67 7.31 -39.36 -0.29 0.39 16 27 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 28 C -0.12 -1.10 9.65 -39.53 -0.38 -1.48 16 29 H 0.06 0.47 7.57 -51.93 -0.39 0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.52 6.39 -51.93 -0.33 0.19 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.98 6.55 -51.93 -0.34 0.64 16 34 H 0.08 0.96 7.27 -51.93 -0.38 0.59 16 35 H 0.11 1.02 4.79 -51.93 -0.25 0.77 16 36 H 0.09 1.37 6.52 -51.93 -0.34 1.03 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.39 9.52 7.92 -40.82 -0.32 9.20 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.28 7.23 -51.93 -0.38 0.91 16 43 H 0.14 1.25 7.20 -52.48 -0.38 0.87 16 44 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.15 1.09 7.94 -52.48 -0.42 0.67 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -30.70 373.48 -7.99 -38.69 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.96 Total: 7.17 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.70 Total: -6.48 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.50 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.08 Total: -7.98 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.70 -7.99 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999860982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.168 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds