Wall clock time and date at job start Tue Mar 31 2020 21:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47561 * 2 1 4 4 C 1.50700 * 109.46970 * 240.00180 * 2 1 3 5 5 O 1.21286 * 119.99899 * 259.39348 * 4 2 1 6 6 N 1.34775 * 120.00078 * 79.39392 * 4 2 1 7 7 C 1.46927 * 120.62937 * 4.28657 * 6 4 2 8 8 C 1.53622 * 108.54142 * 126.36784 * 7 6 4 9 9 C 1.53037 * 109.24409 * 54.85676 * 8 7 6 10 10 C 1.53043 * 109.53731 * 298.51012 * 9 8 7 11 11 H 1.09004 * 109.49614 * 301.40983 * 10 9 8 12 12 N 1.46503 * 109.52653 * 181.33261 * 10 9 8 13 13 C 1.36941 * 120.00186 * 85.13984 * 12 10 9 14 14 H 1.07999 * 119.99762 * 0.02562 * 13 12 10 15 15 C 1.38807 * 120.00214 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00146 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46769 * 60.00538 * 17 15 13 19 19 H 1.48496 * 109.47270 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47081 * 300.00468 * 17 15 13 21 21 C 1.46924 * 120.63002 * 184.56442 * 6 4 2 22 22 C 1.50700 * 109.47055 * 120.00350 * 2 1 3 23 23 C 1.38230 * 119.99071 * 59.99908 * 22 2 1 24 24 C 1.38187 * 120.05047 * 180.02562 * 23 22 2 25 25 C 1.38494 * 120.02598 * 0.23297 * 24 23 22 26 26 F 1.35094 * 120.01323 * 179.72072 * 25 24 23 27 27 C 1.38396 * 119.97438 * 359.51170 * 25 24 23 28 28 C 1.38444 * 119.95033 * 0.50831 * 27 25 24 29 29 F 1.35099 * 120.01170 * 179.70185 * 28 27 25 30 30 H 1.09000 * 109.47421 * 173.94282 * 1 2 3 31 31 H 1.09006 * 109.47133 * 293.94151 * 1 2 3 32 32 H 1.09001 * 109.47142 * 53.93924 * 1 2 3 33 33 H 1.08999 * 109.58222 * 246.20253 * 7 6 4 34 34 H 1.09003 * 109.58606 * 6.62608 * 7 6 4 35 35 H 1.09000 * 109.63696 * 294.86034 * 8 7 6 36 36 H 1.09008 * 109.45615 * 174.73863 * 8 7 6 37 37 H 1.09003 * 109.46379 * 178.48598 * 9 8 7 38 38 H 1.09003 * 109.45044 * 58.52004 * 9 8 7 39 39 H 0.96997 * 120.00124 * 265.14618 * 12 10 9 40 40 H 0.96995 * 120.00536 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.59143 * 353.37113 * 21 6 4 42 42 H 1.09005 * 109.58879 * 113.65684 * 21 6 4 43 43 H 1.08004 * 119.97023 * 0.02562 * 23 22 2 44 44 H 1.08002 * 119.98618 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.02936 * 180.22955 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.4166 -1.8581 -1.1536 6 7 2.0543 -0.0703 -2.4163 7 6 1.6808 1.3477 -2.5086 8 6 2.8198 2.1086 -3.2042 9 6 3.1178 1.4485 -4.5524 10 6 3.5715 0.0045 -4.3260 11 1 4.4579 -0.0031 -3.6916 12 7 3.8871 -0.6173 -5.6145 13 6 5.1298 -0.4556 -6.1667 14 1 5.8773 0.1300 -5.6521 15 6 5.4290 -1.0452 -7.3872 16 7 4.5182 -1.7592 -8.0140 17 14 7.1244 -0.8252 -8.1401 18 1 8.1508 -1.3717 -7.2165 19 1 7.1883 -1.5482 -9.4355 20 1 7.3816 0.6197 -8.3668 21 6 2.4465 -0.7788 -3.6423 22 6 2.0323 -0.7105 1.2304 23 6 1.6982 -2.0339 1.4489 24 6 2.1577 -2.6864 2.5770 25 6 2.9496 -2.0136 3.4925 26 9 3.3940 -2.6501 4.5982 27 6 3.2891 -0.6901 3.2722 28 6 2.8279 -0.0372 2.1419 29 9 3.1536 1.2565 1.9286 30 1 -0.3634 -1.0219 -0.1084 31 1 -0.3634 0.4171 0.9393 32 1 -0.3633 0.6049 -0.8308 33 1 0.7635 1.4469 -3.0890 34 1 1.5279 1.7512 -1.5077 35 1 3.7132 2.0812 -2.5804 36 1 2.5197 3.1442 -3.3647 37 1 3.9073 2.0017 -5.0611 38 1 2.2170 1.4540 -5.1662 39 1 3.2159 -1.1434 -6.0765 40 1 4.7274 -2.1715 -8.8667 41 1 2.7988 -1.7788 -3.3896 42 1 1.5897 -0.8517 -4.3122 43 1 1.0775 -2.5582 0.7373 44 1 1.8957 -3.7203 2.7469 45 1 3.9097 -0.1657 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000969344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:39 Heat of formation + Delta-G solvation = -108.698077 kcal Electronic energy + Delta-G solvation = -29553.374633 eV Core-core repulsion = 25206.089740 eV Total energy + Delta-G solvation = -4347.284893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.09956 -50.04534 -41.63154 -39.90525 -38.57019 -36.26291 -35.20011 -33.72541 -32.74630 -31.83484 -30.51339 -29.71970 -26.81286 -25.99646 -25.20781 -24.15787 -23.41083 -23.03571 -21.31659 -20.02252 -19.31703 -19.16841 -18.68664 -17.75967 -17.41356 -17.01376 -16.87931 -16.66268 -16.36543 -16.24214 -16.08160 -15.57940 -15.49141 -15.29246 -15.21071 -14.98121 -14.71349 -14.49103 -14.15819 -13.83817 -13.67694 -13.59841 -13.26208 -13.00460 -12.93699 -12.84676 -12.77232 -12.35549 -12.31303 -12.27723 -12.16211 -12.02791 -11.84249 -11.70434 -11.62070 -10.91678 -10.73701 -10.07222 -9.69555 -9.66046 -9.04093 -7.97131 -5.26525 -0.15161 0.00537 1.44923 1.48001 1.53891 1.56273 1.88475 2.36053 2.55075 2.80226 3.26351 3.35506 3.38910 3.44949 3.63305 3.76394 3.87829 3.99261 4.01612 4.09761 4.15002 4.16249 4.24785 4.32035 4.36663 4.59564 4.66855 4.75610 4.78711 4.83187 4.84169 4.86414 4.88916 4.94005 5.04543 5.06477 5.15549 5.21215 5.29027 5.40595 5.41683 5.51238 5.58583 5.71771 6.24728 6.42121 7.11703 7.30736 8.03724 8.28150 9.25889 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002678 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.075834 B =10451.578281 C =11077.019571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 H 0.123 0.877 4 C 0.514 3.486 5 O -0.576 6.576 6 N -0.601 5.601 7 C 0.101 3.899 8 C -0.126 4.126 9 C -0.128 4.128 10 C 0.167 3.833 11 H 0.026 0.974 12 N -0.735 5.735 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.072 4.072 16 N -0.967 5.967 17 Si 0.971 3.029 18 H -0.282 1.282 19 H -0.293 1.293 20 H -0.276 1.276 21 C 0.120 3.880 22 C -0.124 4.124 23 C -0.030 4.030 24 C -0.164 4.164 25 C 0.120 3.880 26 F -0.136 7.136 27 C -0.196 4.196 28 C 0.126 3.874 29 F -0.130 7.130 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.160 0.840 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 7.843 24.066 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 H 0.141 0.859 4 C 0.303 3.697 5 O -0.456 6.456 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.165 4.165 9 C -0.168 4.168 10 C 0.057 3.943 11 H 0.044 0.956 12 N -0.375 5.375 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.265 4.265 16 N -0.618 5.618 17 Si 0.800 3.200 18 H -0.208 1.208 19 H -0.220 1.220 20 H -0.201 1.201 21 C -0.004 4.004 22 C -0.126 4.126 23 C -0.048 4.048 24 C -0.182 4.182 25 C 0.101 3.899 26 F -0.114 7.114 27 C -0.215 4.215 28 C 0.107 3.893 29 F -0.109 7.109 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.164 0.836 44 H 0.177 0.823 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.662 7.325 24.109 27.765 hybrid contribution 1.309 -0.405 -0.970 1.679 sum -10.353 6.920 23.139 26.277 Atomic orbital electron populations 1.21815 0.88721 1.03720 1.04959 1.20256 1.00139 1.00368 0.87748 0.85939 1.20986 0.77279 0.86592 0.84836 1.90691 1.49284 1.19930 1.85679 1.48131 1.66103 1.12625 1.06428 1.22276 0.98154 0.77992 1.03578 1.21982 0.98728 1.00434 0.95328 1.22071 1.00733 0.96369 0.97615 1.20631 0.94703 0.92647 0.86276 0.95623 1.42465 1.12993 1.61428 1.20623 1.19487 0.90860 1.25571 1.01409 0.91148 1.25529 1.01583 1.00764 0.98578 1.69795 1.35146 1.39442 1.17382 0.85248 0.79785 0.77717 0.77238 1.20796 1.21954 1.20148 1.21564 0.97370 0.95905 0.85524 1.19637 1.00841 0.95773 0.96313 1.20869 0.96653 0.92313 0.94955 1.21435 0.99938 1.02442 0.94411 1.17418 0.97282 0.90558 0.84685 1.91519 1.87617 1.81707 1.50604 1.21110 1.05833 0.94719 0.99834 1.17141 0.97713 0.79199 0.95260 1.91505 1.90939 1.33789 1.94653 0.92047 0.89120 0.89528 0.88907 0.86580 0.92462 0.87870 0.93844 0.92181 0.79389 0.93913 0.92011 0.90892 0.83630 0.82251 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.78 71.98 0.63 -0.96 16 2 C -0.06 -1.15 2.04 -12.29 -0.03 -1.18 16 3 H 0.12 1.82 5.36 -2.39 -0.01 1.81 16 4 C 0.51 13.87 6.82 87.66 0.60 14.47 16 5 O -0.58 -20.42 14.01 -3.05 -0.04 -20.46 16 6 N -0.60 -15.85 2.97 -818.06 -2.43 -18.28 16 7 C 0.10 1.79 5.75 86.51 0.50 2.29 16 8 C -0.13 -2.74 6.10 30.82 0.19 -2.55 16 9 C -0.13 -4.15 5.47 30.62 0.17 -3.98 16 10 C 0.17 6.68 2.92 45.07 0.13 6.81 16 11 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 12 N -0.73 -37.53 5.12 -322.56 -1.65 -39.18 16 13 C -0.24 -13.63 9.93 84.03 0.83 -12.80 16 14 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 15 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 16 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 17 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.12 4.19 5.91 86.36 0.51 4.70 16 22 C -0.12 -2.50 4.60 -19.81 -0.09 -2.59 16 23 C -0.03 -0.59 7.91 22.26 0.18 -0.42 16 24 C -0.16 -2.96 10.02 22.32 0.22 -2.74 16 25 C 0.12 2.28 7.30 22.37 0.16 2.44 16 26 F -0.14 -2.67 17.27 44.97 0.78 -1.89 16 27 C -0.20 -3.57 10.01 22.36 0.22 -3.35 16 28 C 0.13 2.50 7.25 22.37 0.16 2.66 16 29 F -0.13 -2.55 16.19 44.97 0.73 -1.82 16 30 H 0.06 0.81 7.61 -2.39 -0.02 0.80 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.09 0.76 7.39 -2.39 -0.02 0.75 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.31 5.26 -2.39 -0.01 1.29 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 40 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.06 2.54 7.00 -2.39 -0.02 2.52 16 42 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.15 2.87 7.10 -2.91 -0.02 2.85 16 44 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -71.49 370.64 4.85 -66.64 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.30 Total: 26.39 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 4.86 Total: -0.88 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.80 Total: -116.67 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.04 Total: -20.46 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 1.50 Total: -3.71 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -71.49 4.85 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000969344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.061 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds