Wall clock time and date at job start Tue Mar 31 2020 21:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46971 * 2 1 4 4 C 1.50699 * 109.46924 * 240.00474 * 2 1 3 5 5 O 1.21292 * 119.99673 * 259.39054 * 4 2 1 6 6 N 1.34771 * 120.00456 * 79.39464 * 4 2 1 7 7 C 1.46927 * 120.63452 * 184.56888 * 6 4 2 8 8 C 1.53196 * 108.77497 * 233.58302 * 7 6 4 9 9 C 1.53040 * 109.31111 * 305.36130 * 8 7 6 10 10 C 1.53042 * 109.53776 * 61.36324 * 9 8 7 11 11 H 1.09002 * 109.49785 * 58.61924 * 10 9 8 12 12 N 1.46504 * 109.49964 * 178.68080 * 10 9 8 13 13 C 1.36932 * 120.00257 * 275.00454 * 12 10 9 14 14 H 1.08002 * 119.99780 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99913 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47144 * 90.00538 * 17 15 13 19 19 H 1.48507 * 109.47056 * 210.00109 * 17 15 13 20 20 H 1.48495 * 109.47610 * 330.00146 * 17 15 13 21 21 C 1.46929 * 120.62918 * 4.27723 * 6 4 2 22 22 C 1.50700 * 109.46972 * 120.00480 * 2 1 3 23 23 C 1.38224 * 119.98641 * 59.97396 * 22 2 1 24 24 C 1.38191 * 120.04993 * 180.02562 * 23 22 2 25 25 C 1.38489 * 120.02417 * 0.02562 * 24 23 22 26 26 F 1.35106 * 120.01628 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.97734 * 0.02562 * 25 24 23 28 28 C 1.38445 * 119.94648 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.00939 * 180.28165 * 28 27 25 30 30 H 1.09002 * 109.46809 * 53.93450 * 1 2 3 31 31 H 1.08998 * 109.47039 * 173.93080 * 1 2 3 32 32 H 1.08996 * 109.47075 * 293.94193 * 1 2 3 33 33 H 1.08998 * 109.58493 * 353.36445 * 7 6 4 34 34 H 1.09001 * 109.58918 * 113.64937 * 7 6 4 35 35 H 1.08997 * 109.49512 * 65.30921 * 8 7 6 36 36 H 1.08991 * 109.49772 * 185.41081 * 8 7 6 37 37 H 1.08996 * 109.46267 * 181.38510 * 9 8 7 38 38 H 1.09004 * 109.46369 * 301.35918 * 9 8 7 39 39 H 0.97002 * 119.99454 * 94.99878 * 12 10 9 40 40 H 0.97003 * 119.99496 * 179.97438 * 16 15 13 41 41 H 1.08992 * 109.59295 * 246.20671 * 21 6 4 42 42 H 1.09005 * 109.58291 * 6.63536 * 21 6 4 43 43 H 1.07999 * 119.97939 * 0.02562 * 23 22 2 44 44 H 1.08000 * 119.98597 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.03083 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4168 -1.8581 -1.1537 6 7 2.0545 -0.0702 -2.4163 7 6 2.4465 -0.7787 -3.6423 8 6 3.5716 0.0046 -4.3261 9 6 3.1178 1.4485 -4.5525 10 6 2.8198 2.1087 -3.2043 11 1 3.7133 2.0818 -2.5806 12 7 2.4158 3.5003 -3.4199 13 6 3.3664 4.4785 -3.5400 14 1 4.4141 4.2242 -3.4754 15 6 2.9836 5.7970 -3.7448 16 7 1.7068 6.1069 -3.8230 17 14 4.2804 7.1315 -3.9079 18 1 4.6603 7.2807 -5.3356 19 1 3.7337 8.4172 -3.4042 20 1 5.4780 6.7578 -3.1135 21 6 1.6808 1.3477 -2.5087 22 6 2.0324 -0.7105 1.2304 23 6 1.6978 -2.0337 1.4490 24 6 2.1573 -2.6864 2.5771 25 6 2.9531 -2.0150 3.4903 26 9 3.4018 -2.6531 4.5934 27 6 3.2879 -0.6898 3.2730 28 6 2.8270 -0.0370 2.1424 29 9 3.1577 1.2549 1.9262 30 1 -0.3633 0.6050 -0.8307 31 1 -0.3633 -1.0219 -0.1087 32 1 -0.3633 0.4170 0.9392 33 1 2.7989 -1.7787 -3.3896 34 1 1.5897 -0.8516 -4.3122 35 1 4.4578 -0.0030 -3.6917 36 1 3.8060 -0.4576 -5.2850 37 1 3.9072 2.0018 -5.0611 38 1 2.2170 1.4542 -5.1663 39 1 1.4748 3.7287 -3.4776 40 1 1.4393 7.0284 -3.9657 41 1 0.7636 1.4470 -3.0890 42 1 1.5279 1.7512 -1.5077 43 1 1.0769 -2.5580 0.7377 44 1 1.8949 -3.7201 2.7471 45 1 3.9088 -0.1656 3.9843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000969348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:47 Heat of formation + Delta-G solvation = -91.762525 kcal Electronic energy + Delta-G solvation = -29808.680746 eV Core-core repulsion = 25462.130234 eV Total energy + Delta-G solvation = -4346.550512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.20962 -49.13140 -40.56541 -38.94068 -37.32896 -34.41877 -34.36312 -32.28021 -31.33425 -30.98102 -29.26968 -28.30592 -25.79640 -24.45184 -23.85801 -23.32040 -22.58909 -21.42961 -20.06473 -18.86719 -18.41822 -17.74013 -17.29544 -16.75086 -16.33867 -16.12060 -15.75341 -15.45702 -15.42927 -15.07293 -14.64696 -14.62735 -14.20141 -14.13225 -14.01107 -13.62262 -13.42155 -13.08921 -13.02863 -12.86727 -12.66052 -12.37044 -12.27480 -12.09621 -11.91765 -11.43709 -11.37747 -11.13258 -10.96371 -10.93291 -10.69396 -10.47127 -10.41481 -10.12719 -9.75295 -9.65600 -9.23169 -8.97579 -8.80501 -8.47895 -7.06508 -5.84604 -3.14461 0.71258 0.84428 2.62068 2.95236 3.25422 3.39587 3.45734 3.46658 3.66781 4.17037 4.26331 4.33376 4.48874 4.57845 4.65466 4.86873 4.97373 5.06864 5.14647 5.22444 5.25185 5.40668 5.43809 5.51650 5.54251 5.60483 5.61324 5.68062 5.72479 5.75159 5.80264 5.84802 5.89884 5.98756 6.07506 6.09478 6.28140 6.34648 6.38572 6.55332 6.65675 6.78179 6.96484 7.47348 7.64256 8.18216 8.33329 9.45048 9.98438 10.33673 11.37691 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.003123 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.912232 B = 8964.414111 C =10177.331302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 H 0.113 0.887 4 C 0.525 3.475 5 O -0.546 6.546 6 N -0.600 5.600 7 C 0.113 3.887 8 C -0.133 4.133 9 C -0.137 4.137 10 C 0.167 3.833 11 H 0.052 0.948 12 N -0.721 5.721 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.096 3.904 22 C -0.113 4.113 23 C -0.022 4.022 24 C -0.168 4.168 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.197 4.197 28 C 0.139 3.861 29 F -0.124 7.124 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 -17.373 9.954 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.131 0.869 4 C 0.313 3.687 5 O -0.424 6.424 6 N -0.332 5.332 7 C -0.009 4.009 8 C -0.171 4.171 9 C -0.178 4.178 10 C 0.056 3.944 11 H 0.070 0.930 12 N -0.362 5.362 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.027 4.027 22 C -0.115 4.115 23 C -0.040 4.040 24 C -0.187 4.187 25 C 0.108 3.892 26 F -0.113 7.113 27 C -0.216 4.216 28 C 0.119 3.881 29 F -0.103 7.103 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.365 -17.812 10.023 20.574 hybrid contribution 0.663 1.205 -0.095 1.378 sum -1.702 -16.607 9.928 19.423 Atomic orbital electron populations 1.21761 0.90982 1.03076 1.03661 1.20253 0.98507 1.01057 0.90063 0.86892 1.20240 0.77751 0.86605 0.84107 1.90657 1.48427 1.17988 1.85290 1.48068 1.66298 1.11718 1.07164 1.21620 0.97680 0.96548 0.85074 1.21923 0.97992 0.97095 1.00130 1.22278 1.01517 0.93513 1.00460 1.20575 0.94834 0.85453 0.93512 0.93049 1.42308 1.06779 1.00401 1.86754 1.19194 0.88823 0.87212 1.41928 0.91141 1.24732 0.96065 0.97266 1.02562 1.69652 1.13732 1.18194 1.56361 0.86203 0.80664 0.81685 0.77716 1.21691 1.21712 1.20698 1.22360 0.99056 0.78801 1.02472 1.19503 1.00520 0.95365 0.96097 1.20754 0.96331 0.92223 0.94718 1.21184 1.00840 1.01571 0.95106 1.17309 0.96992 0.90276 0.84632 1.91522 1.87438 1.81573 1.50755 1.20948 1.06217 0.94646 0.99833 1.17144 0.96973 0.79328 0.94640 1.91567 1.90558 1.33678 1.94460 0.90861 0.91757 0.90942 0.89448 0.91624 0.91938 0.91390 0.91536 0.92444 0.78193 0.93423 0.91048 0.89509 0.83705 0.84076 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.78 37.16 0.33 -0.99 16 2 C -0.08 -0.94 2.04 -92.92 -0.19 -1.13 16 3 H 0.11 1.46 5.36 -51.93 -0.28 1.18 16 4 C 0.53 7.40 6.82 -10.99 -0.07 7.32 16 5 O -0.55 -8.71 14.02 5.55 0.08 -8.63 16 6 N -0.60 -8.34 2.97 -172.50 -0.51 -8.85 16 7 C 0.11 1.46 6.44 -3.71 -0.02 1.44 16 8 C -0.13 -1.80 6.08 -26.61 -0.16 -1.96 16 9 C -0.14 -2.28 5.46 -26.69 -0.15 -2.42 16 10 C 0.17 3.07 2.94 -67.58 -0.20 2.88 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 N -0.72 -16.77 5.13 -53.09 -0.27 -17.04 16 13 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 16 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 17 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.10 1.43 5.22 -3.48 -0.02 1.42 16 22 C -0.11 -1.36 4.60 -104.55 -0.48 -1.84 16 23 C -0.02 -0.24 7.91 -39.60 -0.31 -0.55 16 24 C -0.17 -1.64 10.03 -39.51 -0.40 -2.03 16 25 C 0.13 1.35 7.30 -39.43 -0.29 1.06 16 26 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 27 C -0.20 -2.15 10.01 -39.45 -0.39 -2.54 16 28 C 0.14 1.71 7.24 -39.43 -0.29 1.42 16 29 F -0.12 -1.70 16.19 2.25 0.04 -1.67 16 30 H 0.07 0.69 7.39 -51.93 -0.38 0.31 16 31 H 0.06 0.56 7.60 -51.93 -0.39 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.38 9.39 7.80 -40.82 -0.32 9.07 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.25 5.26 -51.93 -0.27 0.98 16 43 H 0.15 1.44 7.10 -52.49 -0.37 1.06 16 44 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -29.97 370.63 -8.39 -38.36 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.16 Total: 7.92 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.89 Total: -4.82 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.06 Total: -52.13 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.97 -8.39 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000969348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.404 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds