Wall clock time and date at job start Tue Mar 31 2020 21:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46971 * 2 1 4 4 C 1.50699 * 109.46924 * 240.00474 * 2 1 3 5 5 O 1.21292 * 119.99673 * 259.39054 * 4 2 1 6 6 N 1.34771 * 120.00456 * 79.39464 * 4 2 1 7 7 C 1.46927 * 120.63452 * 184.56888 * 6 4 2 8 8 C 1.53196 * 108.77497 * 233.58302 * 7 6 4 9 9 C 1.53040 * 109.31111 * 305.36130 * 8 7 6 10 10 C 1.53042 * 109.53776 * 61.36324 * 9 8 7 11 11 H 1.09002 * 109.49785 * 58.61924 * 10 9 8 12 12 N 1.46504 * 109.49964 * 178.68080 * 10 9 8 13 13 C 1.36932 * 120.00257 * 275.00454 * 12 10 9 14 14 H 1.08002 * 119.99780 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99913 * 179.97438 * 13 12 10 16 16 N 1.31619 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47144 * 90.00538 * 17 15 13 19 19 H 1.48507 * 109.47056 * 210.00109 * 17 15 13 20 20 H 1.48495 * 109.47610 * 330.00146 * 17 15 13 21 21 C 1.46929 * 120.62918 * 4.27723 * 6 4 2 22 22 C 1.50700 * 109.46972 * 120.00480 * 2 1 3 23 23 C 1.38224 * 119.98641 * 59.97396 * 22 2 1 24 24 C 1.38191 * 120.04993 * 180.02562 * 23 22 2 25 25 C 1.38489 * 120.02417 * 0.02562 * 24 23 22 26 26 F 1.35106 * 120.01628 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.97734 * 0.02562 * 25 24 23 28 28 C 1.38445 * 119.94648 * 359.97438 * 27 25 24 29 29 F 1.35101 * 120.00939 * 180.28165 * 28 27 25 30 30 H 1.09002 * 109.46809 * 53.93450 * 1 2 3 31 31 H 1.08998 * 109.47039 * 173.93080 * 1 2 3 32 32 H 1.08996 * 109.47075 * 293.94193 * 1 2 3 33 33 H 1.08998 * 109.58493 * 353.36445 * 7 6 4 34 34 H 1.09001 * 109.58918 * 113.64937 * 7 6 4 35 35 H 1.08997 * 109.49512 * 65.30921 * 8 7 6 36 36 H 1.08991 * 109.49772 * 185.41081 * 8 7 6 37 37 H 1.08996 * 109.46267 * 181.38510 * 9 8 7 38 38 H 1.09004 * 109.46369 * 301.35918 * 9 8 7 39 39 H 0.97002 * 119.99454 * 94.99878 * 12 10 9 40 40 H 0.97003 * 119.99496 * 179.97438 * 16 15 13 41 41 H 1.08992 * 109.59295 * 246.20671 * 21 6 4 42 42 H 1.09005 * 109.58291 * 6.63536 * 21 6 4 43 43 H 1.07999 * 119.97939 * 0.02562 * 23 22 2 44 44 H 1.08000 * 119.98597 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.03083 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4168 -1.8581 -1.1537 6 7 2.0545 -0.0702 -2.4163 7 6 2.4465 -0.7787 -3.6423 8 6 3.5716 0.0046 -4.3261 9 6 3.1178 1.4485 -4.5525 10 6 2.8198 2.1087 -3.2043 11 1 3.7133 2.0818 -2.5806 12 7 2.4158 3.5003 -3.4199 13 6 3.3664 4.4785 -3.5400 14 1 4.4141 4.2242 -3.4754 15 6 2.9836 5.7970 -3.7448 16 7 1.7068 6.1069 -3.8230 17 14 4.2804 7.1315 -3.9079 18 1 4.6603 7.2807 -5.3356 19 1 3.7337 8.4172 -3.4042 20 1 5.4780 6.7578 -3.1135 21 6 1.6808 1.3477 -2.5087 22 6 2.0324 -0.7105 1.2304 23 6 1.6978 -2.0337 1.4490 24 6 2.1573 -2.6864 2.5771 25 6 2.9531 -2.0150 3.4903 26 9 3.4018 -2.6531 4.5934 27 6 3.2879 -0.6898 3.2730 28 6 2.8270 -0.0370 2.1424 29 9 3.1577 1.2549 1.9262 30 1 -0.3633 0.6050 -0.8307 31 1 -0.3633 -1.0219 -0.1087 32 1 -0.3633 0.4170 0.9392 33 1 2.7989 -1.7787 -3.3896 34 1 1.5897 -0.8516 -4.3122 35 1 4.4578 -0.0030 -3.6917 36 1 3.8060 -0.4576 -5.2850 37 1 3.9072 2.0018 -5.0611 38 1 2.2170 1.4542 -5.1663 39 1 1.4748 3.7287 -3.4776 40 1 1.4393 7.0284 -3.9657 41 1 0.7636 1.4470 -3.0890 42 1 1.5279 1.7512 -1.5077 43 1 1.0769 -2.5580 0.7377 44 1 1.8949 -3.7201 2.7471 45 1 3.9088 -0.1656 3.9843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000969348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:46 Heat of formation + Delta-G solvation = -107.445016 kcal Electronic energy + Delta-G solvation = -29809.360790 eV Core-core repulsion = 25462.130234 eV Total energy + Delta-G solvation = -4347.230556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.11963 -50.03797 -41.64829 -39.90839 -38.59633 -36.04245 -35.36940 -33.71010 -32.89236 -31.82305 -30.18475 -29.88747 -26.90146 -25.73532 -25.41193 -24.19758 -23.70087 -22.63376 -21.35106 -20.09239 -19.31814 -19.12520 -18.69637 -17.77676 -17.38812 -17.01887 -16.83977 -16.65996 -16.37561 -16.25699 -16.08739 -15.61841 -15.52440 -15.27072 -15.21381 -15.00278 -14.78721 -14.41784 -14.11167 -13.89824 -13.69138 -13.53110 -13.27901 -13.01446 -12.94668 -12.83942 -12.77357 -12.38189 -12.32226 -12.28567 -12.14365 -12.03507 -11.85199 -11.72583 -11.55781 -10.97221 -10.70601 -10.07623 -9.69953 -9.66932 -9.00459 -7.94435 -5.22597 -0.15010 0.00195 1.47955 1.48659 1.51764 1.56896 1.89600 2.35422 2.56980 2.80650 3.26248 3.35032 3.38873 3.43343 3.60782 3.82498 3.90151 3.94969 3.99883 4.07654 4.10605 4.14003 4.25475 4.35823 4.37423 4.56315 4.64858 4.74264 4.77604 4.81045 4.82832 4.88213 4.90776 4.93574 5.03698 5.04660 5.09521 5.18221 5.25581 5.37353 5.48084 5.49881 5.58360 5.71933 6.26563 6.34075 7.06380 7.35312 8.07171 8.32412 9.28273 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.003123 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.912232 B = 8964.414111 C =10177.331302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 H 0.100 0.900 4 C 0.525 3.475 5 O -0.563 6.563 6 N -0.600 5.600 7 C 0.112 3.888 8 C -0.122 4.122 9 C -0.129 4.129 10 C 0.163 3.837 11 H 0.032 0.968 12 N -0.730 5.730 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.067 4.067 16 N -0.963 5.963 17 Si 0.965 3.035 18 H -0.288 1.288 19 H -0.295 1.295 20 H -0.274 1.274 21 C 0.110 3.890 22 C -0.122 4.122 23 C -0.025 4.025 24 C -0.157 4.157 25 C 0.122 3.878 26 F -0.135 7.135 27 C -0.197 4.197 28 C 0.117 3.883 29 F -0.139 7.139 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 -19.178 10.176 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.118 0.882 4 C 0.314 3.686 5 O -0.442 6.442 6 N -0.332 5.332 7 C -0.009 4.009 8 C -0.161 4.161 9 C -0.169 4.169 10 C 0.054 3.946 11 H 0.050 0.950 12 N -0.371 5.371 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.260 4.260 16 N -0.614 5.614 17 Si 0.794 3.206 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.199 1.199 21 C -0.013 4.013 22 C -0.123 4.123 23 C -0.043 4.043 24 C -0.176 4.176 25 C 0.102 3.898 26 F -0.113 7.113 27 C -0.216 4.216 28 C 0.097 3.903 29 F -0.117 7.117 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.563 -19.663 10.249 22.321 hybrid contribution 0.780 1.654 -0.132 1.834 sum -1.784 -18.009 10.117 20.733 Atomic orbital electron populations 1.21777 0.89011 1.03959 1.04328 1.20249 1.00105 0.99975 0.89346 0.88200 1.20540 0.77191 0.86440 0.84439 1.90643 1.49225 1.18797 1.85555 1.48078 1.66300 1.11114 1.07725 1.21719 0.98101 0.96213 0.84887 1.21838 0.97758 0.95068 1.01397 1.22096 1.00913 0.95129 0.98748 1.20729 0.95438 0.83848 0.94580 0.94955 1.42409 1.05899 1.01944 1.86840 1.19475 0.89376 0.88056 1.40054 0.91297 1.25418 0.97743 0.99255 1.03603 1.69779 1.15237 1.18120 1.58238 0.85275 0.78735 0.79022 0.77546 1.21536 1.22157 1.19904 1.22096 0.97782 0.79035 1.02397 1.19609 1.00736 0.96029 0.95961 1.20883 0.96484 0.91680 0.95227 1.21459 0.99428 1.02607 0.94073 1.17395 0.97289 0.90197 0.84872 1.91524 1.87487 1.81497 1.50799 1.21086 1.05974 0.94986 0.99560 1.17340 0.98179 0.79065 0.95674 1.91526 1.90873 1.34689 1.94656 0.90733 0.90606 0.89903 0.89195 0.89686 0.92982 0.88848 0.93824 0.92114 0.79017 0.93972 0.89874 0.89207 0.82763 0.81471 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.78 71.99 0.63 -1.71 16 2 C -0.08 -1.76 2.04 -12.28 -0.03 -1.79 16 3 H 0.10 2.59 5.36 -2.39 -0.01 2.58 16 4 C 0.53 14.08 6.82 87.66 0.60 14.68 16 5 O -0.56 -17.05 14.02 -3.07 -0.04 -17.09 16 6 N -0.60 -15.79 2.97 -818.05 -2.43 -18.22 16 7 C 0.11 2.66 6.44 86.36 0.56 3.22 16 8 C -0.12 -3.09 6.08 30.67 0.19 -2.90 16 9 C -0.13 -4.18 5.46 30.62 0.17 -4.01 16 10 C 0.16 6.00 2.94 45.21 0.13 6.14 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 N -0.73 -34.31 5.13 -321.87 -1.65 -35.96 16 13 C -0.24 -12.71 9.93 84.03 0.83 -11.87 16 14 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 15 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 16 N -0.96 -56.52 13.06 21.65 0.28 -56.24 16 17 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.11 3.19 5.22 86.51 0.45 3.64 16 22 C -0.12 -2.80 4.60 -19.82 -0.09 -2.89 16 23 C -0.02 -0.48 7.91 22.26 0.18 -0.31 16 24 C -0.16 -2.70 10.03 22.32 0.22 -2.47 16 25 C 0.12 2.38 7.30 22.37 0.16 2.54 16 26 F -0.13 -2.65 17.27 44.97 0.78 -1.87 16 27 C -0.20 -4.13 10.01 22.36 0.22 -3.91 16 28 C 0.12 2.84 7.24 22.37 0.16 3.01 16 29 F -0.14 -3.88 16.19 44.97 0.73 -3.16 16 30 H 0.07 1.29 7.39 -2.39 -0.02 1.27 16 31 H 0.07 1.16 7.60 -2.39 -0.02 1.14 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 2.16 7.00 -2.39 -0.02 2.14 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.38 18.66 7.80 -92.71 -0.72 17.93 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 2.56 5.26 -2.38 -0.01 2.55 16 43 H 0.15 2.70 7.10 -2.91 -0.02 2.67 16 44 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -63.95 370.63 4.86 -59.09 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.30 Total: 28.12 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 4.86 Total: -1.91 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.79 Total: -110.42 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.04 Total: -17.09 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.50 Total: -5.03 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.95 4.86 -59.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000969348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.351 kcal (2) G-P(sol) polarization free energy of solvation -63.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds