Wall clock time and date at job start Tue Mar 31 2020 21:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47462 * 2 1 4 4 C 1.50703 * 109.46666 * 119.99817 * 2 1 3 5 5 O 1.21275 * 120.00302 * 22.59791 * 4 2 1 6 6 N 1.34781 * 119.99524 * 202.59309 * 4 2 1 7 7 C 1.46925 * 120.63182 * 4.65220 * 6 4 2 8 8 C 1.53626 * 108.54102 * 126.37213 * 7 6 4 9 9 C 1.53039 * 109.24443 * 54.85370 * 8 7 6 10 10 C 1.53042 * 109.53919 * 298.51366 * 9 8 7 11 11 H 1.09000 * 109.49721 * 301.40933 * 10 9 8 12 12 N 1.46504 * 109.52007 * 181.32978 * 10 9 8 13 13 C 1.36936 * 119.99885 * 85.15053 * 12 10 9 14 14 H 1.08004 * 119.99946 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00112 * 179.97438 * 13 12 10 16 16 N 1.31613 * 120.00119 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99668 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47380 * 89.99754 * 17 15 13 19 19 H 1.48500 * 109.46905 * 209.99933 * 17 15 13 20 20 H 1.48495 * 109.47104 * 329.99520 * 17 15 13 21 21 C 1.46928 * 120.62712 * 184.93693 * 6 4 2 22 22 C 1.50694 * 109.47010 * 239.99562 * 2 1 3 23 23 C 1.38229 * 119.99036 * 299.72722 * 22 2 1 24 24 C 1.38188 * 120.05150 * 179.76640 * 23 22 2 25 25 C 1.38498 * 120.02454 * 0.50921 * 24 23 22 26 26 F 1.35101 * 120.01020 * 179.76617 * 25 24 23 27 27 C 1.38393 * 119.97235 * 359.74555 * 25 24 23 28 28 C 1.38438 * 119.95082 * 359.97438 * 27 25 24 29 29 F 1.35110 * 120.01366 * 180.02562 * 28 27 25 30 30 H 1.09002 * 109.47336 * 60.68327 * 1 2 3 31 31 H 1.08998 * 109.47144 * 300.68710 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.68976 * 1 2 3 33 33 H 1.09004 * 109.58777 * 246.20215 * 7 6 4 34 34 H 1.09004 * 109.58558 * 6.63171 * 7 6 4 35 35 H 1.09006 * 109.62851 * 294.86494 * 8 7 6 36 36 H 1.08994 * 109.46013 * 174.74556 * 8 7 6 37 37 H 1.08998 * 109.45959 * 178.49165 * 9 8 7 38 38 H 1.09004 * 109.44672 * 58.52441 * 9 8 7 39 39 H 0.96999 * 119.99896 * 265.13872 * 12 10 9 40 40 H 0.96999 * 119.99839 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.59066 * 353.37326 * 21 6 4 42 42 H 1.09001 * 109.58989 * 113.65873 * 21 6 4 43 43 H 1.08001 * 119.97499 * 0.02562 * 23 22 2 44 44 H 1.08005 * 119.98997 * 180.25563 * 24 23 22 45 45 H 1.08007 * 120.02527 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3202 -1.5073 1.8038 6 7 3.2729 -0.4601 1.6939 7 6 4.1095 0.5753 1.0720 8 6 4.5831 1.5434 2.1668 9 6 5.2833 0.7505 3.2728 10 6 4.2956 -0.2373 3.8982 11 1 3.4412 0.3075 4.2997 12 7 4.9574 -0.9737 4.9780 13 6 5.0123 -0.4393 6.2376 14 1 4.5682 0.5252 6.4349 15 6 5.6388 -1.1373 7.2610 16 7 5.6921 -0.6234 8.4715 17 14 6.4076 -2.8052 6.9195 18 1 7.8239 -2.6235 6.5121 19 1 6.3488 -3.6380 8.1476 20 1 5.6611 -3.4802 5.8276 21 6 3.8167 -1.2217 2.8266 22 6 2.0323 -0.7105 -1.2304 23 6 1.7029 -2.0355 -1.4460 24 6 2.1588 -2.6869 -2.5762 25 6 2.9552 -2.0156 -3.4891 26 9 3.4047 -2.6541 -4.5916 27 6 3.2900 -0.6905 -3.2716 28 6 2.8279 -0.0373 -2.1419 29 9 3.1535 1.2565 -1.9286 30 1 -0.3634 0.5032 -0.8961 31 1 -0.3633 0.5245 0.8837 32 1 -0.3633 -1.0276 0.0124 33 1 4.9716 0.1101 0.5939 34 1 3.5260 1.1190 0.3290 35 1 3.7259 2.0714 2.5846 36 1 5.2802 2.2633 1.7382 37 1 5.6444 1.4369 4.0387 38 1 6.1254 0.2031 2.8494 39 1 5.3564 -1.8399 4.8008 40 1 6.1302 -1.1110 9.1864 41 1 3.0401 -1.8642 3.2415 42 1 4.6538 -1.8324 2.4881 43 1 1.0853 -2.5609 -0.7326 44 1 1.8974 -3.7210 -2.7457 45 1 3.9107 -0.1661 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000969349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:50 Heat of formation + Delta-G solvation = -86.888671 kcal Electronic energy + Delta-G solvation = -29939.101639 eV Core-core repulsion = 25592.762473 eV Total energy + Delta-G solvation = -4346.339166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.48814 -49.41026 -40.66209 -39.11681 -37.50714 -34.78449 -34.23143 -32.20653 -31.41913 -31.26612 -29.52444 -28.94826 -25.87525 -24.66353 -23.71162 -23.42526 -22.24525 -21.89377 -20.06113 -18.90582 -18.68514 -17.97121 -17.67405 -17.10512 -16.45704 -16.37023 -16.11787 -15.78064 -15.63721 -15.01884 -14.79578 -14.66374 -14.40714 -14.15520 -13.99689 -13.71055 -13.47214 -13.21602 -13.17580 -12.82668 -12.77120 -12.57685 -12.45861 -12.20542 -12.14120 -11.68036 -11.55275 -11.22206 -11.12959 -11.02513 -10.68157 -10.54939 -10.42669 -10.10949 -9.87447 -9.61917 -9.50769 -9.00898 -8.95917 -8.52792 -7.31913 -5.79418 -3.16138 0.44029 0.55032 2.52500 2.82638 3.01405 3.36471 3.39218 3.40064 3.44551 3.92111 4.10368 4.13259 4.35552 4.41991 4.56984 4.58764 4.75089 4.82783 4.98312 5.09257 5.21821 5.25207 5.33352 5.37799 5.45422 5.46529 5.49585 5.51550 5.58082 5.60453 5.64141 5.70461 5.79432 5.89088 5.97172 6.00200 6.08727 6.28203 6.28722 6.41809 6.54437 6.76535 6.91869 7.42465 7.95166 8.14233 8.38931 9.16432 9.88821 10.07596 11.38704 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002897 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.216864 B = 9662.568617 C = 9927.184620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 H 0.107 0.893 4 C 0.522 3.478 5 O -0.534 6.534 6 N -0.600 5.600 7 C 0.102 3.898 8 C -0.132 4.132 9 C -0.138 4.138 10 C 0.173 3.827 11 H 0.059 0.941 12 N -0.745 5.745 13 C -0.244 4.244 14 H 0.091 0.909 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.276 1.276 21 C 0.103 3.897 22 C -0.117 4.117 23 C -0.048 4.048 24 C -0.159 4.159 25 C 0.129 3.871 26 F -0.131 7.131 27 C -0.190 4.190 28 C 0.137 3.863 29 F -0.126 7.126 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 1.486 -27.618 28.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 H 0.125 0.875 4 C 0.309 3.691 5 O -0.411 6.411 6 N -0.333 5.333 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.178 4.178 10 C 0.063 3.937 11 H 0.077 0.923 12 N -0.388 5.388 13 C -0.373 4.373 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.580 5.580 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.020 4.020 22 C -0.119 4.119 23 C -0.066 4.066 24 C -0.177 4.177 25 C 0.109 3.891 26 F -0.110 7.110 27 C -0.209 4.209 28 C 0.117 3.883 29 F -0.104 7.104 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.793 1.219 -27.097 28.221 hybrid contribution 1.052 -0.948 -0.325 1.453 sum -6.741 0.271 -27.422 28.240 Atomic orbital electron populations 1.21670 0.90873 1.03737 1.02488 1.20303 0.98856 1.00345 0.90045 0.87478 1.20248 0.81201 0.82694 0.85005 1.90701 1.55310 1.36011 1.59086 1.48072 1.14609 1.37415 1.33193 1.22012 0.94909 0.89386 0.95796 1.22001 1.00940 0.97658 0.96531 1.22248 0.99159 0.99263 0.97130 1.20444 0.94240 0.91641 0.87365 0.92263 1.42671 1.68151 1.21055 1.06880 1.19031 1.31051 1.03311 0.83944 0.89158 1.24664 1.00740 0.98213 0.95346 1.69696 1.48768 1.38877 1.00670 0.86558 0.79517 0.85347 0.77175 1.21068 1.21673 1.20264 1.22031 0.99158 0.94694 0.86126 1.19595 1.00495 0.95367 0.96400 1.20914 0.96977 0.92617 0.96116 1.21244 1.00016 1.01780 0.94702 1.17328 0.96774 0.90276 0.84674 1.91543 1.87293 1.81499 1.50625 1.20988 1.05740 0.94597 0.99607 1.17062 0.97348 0.79144 0.94727 1.91521 1.90787 1.33660 1.94424 0.91723 0.91296 0.91009 0.91427 0.89969 0.91541 0.91085 0.90970 0.92582 0.80607 0.92998 0.88733 0.91870 0.83282 0.83719 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.51 37.16 0.32 -0.85 16 2 C -0.07 -0.74 2.09 -92.92 -0.19 -0.94 16 3 H 0.11 0.97 5.30 -51.93 -0.28 0.69 16 4 C 0.52 7.15 6.44 -10.98 -0.07 7.08 16 5 O -0.53 -9.04 15.46 5.56 0.09 -8.96 16 6 N -0.60 -8.30 2.97 -172.49 -0.51 -8.81 16 7 C 0.10 1.15 6.32 -3.49 -0.02 1.13 16 8 C -0.13 -1.63 6.10 -26.39 -0.16 -1.80 16 9 C -0.14 -2.24 5.47 -26.69 -0.15 -2.39 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 N -0.75 -17.37 4.93 -53.30 -0.26 -17.63 16 13 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 14 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 17 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 21 C 0.10 1.70 5.91 -3.71 -0.02 1.68 16 22 C -0.12 -1.07 4.74 -104.55 -0.50 -1.56 16 23 C -0.05 -0.42 8.82 -39.60 -0.35 -0.77 16 24 C -0.16 -1.22 10.03 -39.50 -0.40 -1.62 16 25 C 0.13 1.06 7.30 -39.43 -0.29 0.78 16 26 F -0.13 -1.16 17.27 2.25 0.04 -1.12 16 27 C -0.19 -1.49 10.01 -39.45 -0.39 -1.88 16 28 C 0.14 1.17 7.13 -39.43 -0.28 0.89 16 29 F -0.13 -1.09 14.88 2.25 0.03 -1.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.67 7.14 -51.93 -0.37 0.30 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.78 3.88 -51.93 -0.20 0.58 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.09 1.75 7.00 -51.93 -0.36 1.38 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.15 1.29 7.59 -52.49 -0.40 0.90 16 44 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -32.25 367.90 -8.05 -40.30 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.08 Total: 6.89 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.95 Total: -4.03 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.00 Total: -54.86 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.07 Total: -2.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.25 -8.05 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000969349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.591 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds