Wall clock time and date at job start Tue Mar 31 2020 21:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47462 * 2 1 4 4 C 1.50703 * 109.46666 * 119.99817 * 2 1 3 5 5 O 1.21275 * 120.00302 * 22.59791 * 4 2 1 6 6 N 1.34781 * 119.99524 * 202.59309 * 4 2 1 7 7 C 1.46925 * 120.63182 * 4.65220 * 6 4 2 8 8 C 1.53626 * 108.54102 * 126.37213 * 7 6 4 9 9 C 1.53039 * 109.24443 * 54.85370 * 8 7 6 10 10 C 1.53042 * 109.53919 * 298.51366 * 9 8 7 11 11 H 1.09000 * 109.49721 * 301.40933 * 10 9 8 12 12 N 1.46504 * 109.52007 * 181.32978 * 10 9 8 13 13 C 1.36936 * 119.99885 * 85.15053 * 12 10 9 14 14 H 1.08004 * 119.99946 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00112 * 179.97438 * 13 12 10 16 16 N 1.31613 * 120.00119 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99668 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47380 * 89.99754 * 17 15 13 19 19 H 1.48500 * 109.46905 * 209.99933 * 17 15 13 20 20 H 1.48495 * 109.47104 * 329.99520 * 17 15 13 21 21 C 1.46928 * 120.62712 * 184.93693 * 6 4 2 22 22 C 1.50694 * 109.47010 * 239.99562 * 2 1 3 23 23 C 1.38229 * 119.99036 * 299.72722 * 22 2 1 24 24 C 1.38188 * 120.05150 * 179.76640 * 23 22 2 25 25 C 1.38498 * 120.02454 * 0.50921 * 24 23 22 26 26 F 1.35101 * 120.01020 * 179.76617 * 25 24 23 27 27 C 1.38393 * 119.97235 * 359.74555 * 25 24 23 28 28 C 1.38438 * 119.95082 * 359.97438 * 27 25 24 29 29 F 1.35110 * 120.01366 * 180.02562 * 28 27 25 30 30 H 1.09002 * 109.47336 * 60.68327 * 1 2 3 31 31 H 1.08998 * 109.47144 * 300.68710 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.68976 * 1 2 3 33 33 H 1.09004 * 109.58777 * 246.20215 * 7 6 4 34 34 H 1.09004 * 109.58558 * 6.63171 * 7 6 4 35 35 H 1.09006 * 109.62851 * 294.86494 * 8 7 6 36 36 H 1.08994 * 109.46013 * 174.74556 * 8 7 6 37 37 H 1.08998 * 109.45959 * 178.49165 * 9 8 7 38 38 H 1.09004 * 109.44672 * 58.52441 * 9 8 7 39 39 H 0.96999 * 119.99896 * 265.13872 * 12 10 9 40 40 H 0.96999 * 119.99839 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.59066 * 353.37326 * 21 6 4 42 42 H 1.09001 * 109.58989 * 113.65873 * 21 6 4 43 43 H 1.08001 * 119.97499 * 0.02562 * 23 22 2 44 44 H 1.08005 * 119.98997 * 180.25563 * 24 23 22 45 45 H 1.08007 * 120.02527 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3202 -1.5073 1.8038 6 7 3.2729 -0.4601 1.6939 7 6 4.1095 0.5753 1.0720 8 6 4.5831 1.5434 2.1668 9 6 5.2833 0.7505 3.2728 10 6 4.2956 -0.2373 3.8982 11 1 3.4412 0.3075 4.2997 12 7 4.9574 -0.9737 4.9780 13 6 5.0123 -0.4393 6.2376 14 1 4.5682 0.5252 6.4349 15 6 5.6388 -1.1373 7.2610 16 7 5.6921 -0.6234 8.4715 17 14 6.4076 -2.8052 6.9195 18 1 7.8239 -2.6235 6.5121 19 1 6.3488 -3.6380 8.1476 20 1 5.6611 -3.4802 5.8276 21 6 3.8167 -1.2217 2.8266 22 6 2.0323 -0.7105 -1.2304 23 6 1.7029 -2.0355 -1.4460 24 6 2.1588 -2.6869 -2.5762 25 6 2.9552 -2.0156 -3.4891 26 9 3.4047 -2.6541 -4.5916 27 6 3.2900 -0.6905 -3.2716 28 6 2.8279 -0.0373 -2.1419 29 9 3.1535 1.2565 -1.9286 30 1 -0.3634 0.5032 -0.8961 31 1 -0.3633 0.5245 0.8837 32 1 -0.3633 -1.0276 0.0124 33 1 4.9716 0.1101 0.5939 34 1 3.5260 1.1190 0.3290 35 1 3.7259 2.0714 2.5846 36 1 5.2802 2.2633 1.7382 37 1 5.6444 1.4369 4.0387 38 1 6.1254 0.2031 2.8494 39 1 5.3564 -1.8399 4.8008 40 1 6.1302 -1.1110 9.1864 41 1 3.0401 -1.8642 3.2415 42 1 4.6538 -1.8324 2.4881 43 1 1.0853 -2.5609 -0.7326 44 1 1.8974 -3.7210 -2.7457 45 1 3.9107 -0.1661 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000969349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:49 Heat of formation + Delta-G solvation = -105.745040 kcal Electronic energy + Delta-G solvation = -29939.919312 eV Core-core repulsion = 25592.762473 eV Total energy + Delta-G solvation = -4347.156839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.11629 -50.04468 -41.67364 -39.92726 -38.76878 -36.35974 -35.18107 -33.85361 -32.95997 -31.88571 -30.66597 -30.11123 -26.95489 -25.94993 -24.98416 -24.16221 -23.38880 -23.05828 -21.45406 -20.10828 -19.52920 -19.33126 -18.77879 -17.99566 -17.30480 -17.06632 -16.94047 -16.71550 -16.48799 -16.30635 -16.16139 -15.58633 -15.45411 -15.26466 -15.24451 -14.99388 -14.73082 -14.52366 -14.08269 -13.97056 -13.89821 -13.80846 -13.37817 -13.12636 -12.99005 -12.84737 -12.79013 -12.54099 -12.33996 -12.27371 -12.11388 -11.97868 -11.82015 -11.78407 -11.70309 -10.96820 -10.91775 -10.12554 -9.75115 -9.69617 -9.33896 -8.04587 -5.39395 -0.20428 -0.05239 1.36851 1.40415 1.47175 1.48244 1.84464 2.27266 2.46732 2.77509 3.25728 3.26756 3.37631 3.42714 3.52185 3.57120 3.77666 3.92934 3.94092 3.97787 4.02489 4.13826 4.18088 4.26890 4.31093 4.53673 4.64262 4.67456 4.74748 4.77596 4.81765 4.84969 4.87160 4.88422 4.99318 5.00885 5.10667 5.15658 5.26549 5.35595 5.40479 5.49562 5.67262 5.74231 6.18514 6.34480 7.02866 7.06606 7.78016 7.98141 9.16890 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002897 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.216864 B = 9662.568617 C = 9927.184620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 H 0.122 0.878 4 C 0.518 3.482 5 O -0.572 6.572 6 N -0.602 5.602 7 C 0.103 3.897 8 C -0.125 4.125 9 C -0.129 4.129 10 C 0.170 3.830 11 H 0.032 0.968 12 N -0.749 5.749 13 C -0.230 4.230 14 H 0.054 0.946 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.297 1.297 20 H -0.253 1.253 21 C 0.114 3.886 22 C -0.123 4.123 23 C -0.055 4.055 24 C -0.154 4.154 25 C 0.123 3.877 26 F -0.135 7.135 27 C -0.184 4.184 28 C 0.137 3.863 29 F -0.125 7.125 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.366 0.634 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.161 0.839 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 1.119 -31.226 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 H 0.139 0.861 4 C 0.307 3.693 5 O -0.452 6.452 6 N -0.334 5.334 7 C -0.018 4.018 8 C -0.163 4.163 9 C -0.170 4.170 10 C 0.061 3.939 11 H 0.050 0.950 12 N -0.392 5.392 13 C -0.360 4.360 14 H 0.072 0.928 15 C -0.254 4.254 16 N -0.634 5.634 17 Si 0.783 3.217 18 H -0.200 1.200 19 H -0.223 1.223 20 H -0.178 1.178 21 C -0.009 4.009 22 C -0.125 4.125 23 C -0.073 4.073 24 C -0.173 4.173 25 C 0.104 3.896 26 F -0.114 7.114 27 C -0.204 4.204 28 C 0.117 3.883 29 F -0.103 7.103 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.200 0.800 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.162 0.838 44 H 0.178 0.822 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.149 0.880 -30.786 31.618 hybrid contribution 0.770 -0.752 0.762 1.318 sum -6.380 0.128 -30.025 30.695 Atomic orbital electron populations 1.21687 0.90257 1.03497 1.03252 1.20262 0.99349 1.00470 0.88464 0.86061 1.20952 0.80546 0.82183 0.85640 1.90684 1.56264 1.37769 1.60448 1.48154 1.15150 1.37758 1.32339 1.22202 0.95485 0.88623 0.95531 1.21963 1.01035 0.97866 0.95477 1.22064 0.98864 0.98371 0.97654 1.20604 0.93791 0.92411 0.87093 0.95024 1.42637 1.68682 1.21562 1.06348 1.18942 1.29332 1.01835 0.85938 0.92811 1.25502 1.02145 1.02720 0.95036 1.69881 1.50663 1.40926 1.01929 0.85402 0.78980 0.80038 0.77325 1.20003 1.22336 1.17764 1.21660 0.98870 0.93981 0.86427 1.19520 1.01170 0.95575 0.96195 1.20915 0.97275 0.92654 0.96443 1.21397 0.99304 1.02521 0.94048 1.17433 0.96972 0.90573 0.84647 1.91539 1.87365 1.81615 1.50831 1.21155 1.05303 0.94412 0.99509 1.17011 0.97303 0.79170 0.94818 1.91523 1.90779 1.33555 1.94428 0.89350 0.92120 0.91789 0.89723 0.87615 0.92085 0.88027 0.93739 0.91527 0.80025 0.93277 0.91104 0.90333 0.83814 0.82154 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.51 71.98 0.61 -1.51 16 2 C -0.06 -1.16 2.09 -12.29 -0.03 -1.18 16 3 H 0.12 1.81 5.30 -2.39 -0.01 1.80 16 4 C 0.52 13.63 6.44 87.66 0.56 14.19 16 5 O -0.57 -19.46 15.46 -3.01 -0.05 -19.51 16 6 N -0.60 -15.69 2.97 -818.04 -2.43 -18.11 16 7 C 0.10 2.00 6.32 86.51 0.55 2.54 16 8 C -0.12 -2.77 6.10 30.82 0.19 -2.59 16 9 C -0.13 -4.10 5.47 30.62 0.17 -3.93 16 10 C 0.17 6.48 2.92 45.07 0.13 6.61 16 11 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 12 N -0.75 -35.12 4.93 -322.56 -1.59 -36.71 16 13 C -0.23 -13.21 10.41 84.03 0.88 -12.34 16 14 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 15 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 16 N -0.98 -63.65 13.97 21.65 0.30 -63.35 16 17 Si 0.96 45.70 27.74 68.60 1.90 47.60 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 20 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 21 C 0.11 3.70 5.91 86.36 0.51 4.22 16 22 C -0.12 -1.94 4.74 -19.82 -0.09 -2.03 16 23 C -0.05 -0.84 8.82 22.26 0.20 -0.65 16 24 C -0.15 -2.02 10.03 22.32 0.22 -1.80 16 25 C 0.12 1.70 7.30 22.37 0.16 1.86 16 26 F -0.14 -2.06 17.27 44.97 0.78 -1.28 16 27 C -0.18 -2.30 10.01 22.35 0.22 -2.07 16 28 C 0.14 1.90 7.13 22.37 0.16 2.06 16 29 F -0.12 -1.68 14.88 44.97 0.67 -1.01 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.15 7.14 -2.39 -0.02 1.14 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.11 1.60 3.88 -2.39 -0.01 1.59 16 35 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.97 8.14 -2.38 -0.02 1.96 16 39 H 0.37 16.35 5.66 -92.71 -0.52 15.83 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.07 2.65 7.00 -2.39 -0.02 2.63 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.14 2.37 7.59 -2.91 -0.02 2.34 16 44 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -72.52 367.90 4.94 -67.57 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.44 Total: 24.65 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.91 Total: 0.14 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -3.71 Total: -118.17 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 1.45 Total: -2.29 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -72.52 4.94 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000969349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.171 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds