Wall clock time and date at job start Tue Mar 31 2020 21:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47714 * 2 1 4 4 C 1.50708 * 109.46773 * 120.00303 * 2 1 3 5 5 O 1.21280 * 119.99813 * 23.63493 * 4 2 1 6 6 N 1.34772 * 119.99658 * 203.63798 * 4 2 1 7 7 C 1.46929 * 120.63237 * 4.82939 * 6 4 2 8 8 C 1.52760 * 109.00664 * 233.58470 * 7 6 4 9 9 C 1.53038 * 109.38608 * 305.58649 * 8 7 6 10 10 C 1.53039 * 109.53743 * 61.24024 * 9 8 7 11 11 H 1.09005 * 109.49425 * 58.58412 * 10 9 8 12 12 N 1.46494 * 109.52559 * 178.66670 * 10 9 8 13 13 C 1.36938 * 120.00105 * 274.85837 * 12 10 9 14 14 H 1.07998 * 120.00351 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99889 * 179.97438 * 13 12 10 16 16 N 1.31621 * 120.00326 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00032 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46982 * 120.00263 * 17 15 13 20 20 H 1.48503 * 109.47059 * 240.00504 * 17 15 13 21 21 C 1.46924 * 120.63258 * 185.11148 * 6 4 2 22 22 C 1.50702 * 109.46700 * 239.99903 * 2 1 3 23 23 C 1.38257 * 119.96493 * 300.25425 * 22 2 1 24 24 C 1.38214 * 120.06701 * 180.25775 * 23 22 2 25 25 C 1.38414 * 120.00225 * 359.49403 * 24 23 22 26 26 F 1.35097 * 120.03424 * 180.23285 * 25 24 23 27 27 C 1.38642 * 119.92786 * 0.25269 * 25 24 23 28 28 F 1.35099 * 120.03500 * 180.02562 * 27 25 24 29 29 C 1.38210 * 119.96263 * 120.00780 * 22 2 1 30 30 H 1.09004 * 109.46745 * 55.33087 * 1 2 3 31 31 H 1.08993 * 109.47389 * 175.33316 * 1 2 3 32 32 H 1.09005 * 109.47101 * 295.33561 * 1 2 3 33 33 H 1.08999 * 109.58421 * 353.41923 * 7 6 4 34 34 H 1.08998 * 109.58718 * 113.84426 * 7 6 4 35 35 H 1.09003 * 109.56189 * 185.55143 * 8 7 6 36 36 H 1.08998 * 109.38660 * 65.51740 * 8 7 6 37 37 H 1.09008 * 109.45742 * 301.22185 * 9 8 7 38 38 H 1.08998 * 109.45106 * 181.25291 * 9 8 7 39 39 H 0.97004 * 120.00015 * 94.85875 * 12 10 9 40 40 H 0.96992 * 120.00279 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.58665 * 246.15965 * 21 6 4 42 42 H 1.09001 * 109.58336 * 6.43498 * 21 6 4 43 43 H 1.07998 * 119.97246 * 0.02562 * 23 22 2 44 44 H 1.08003 * 119.99878 * 179.77114 * 24 23 22 45 45 H 1.07998 * 120.00186 * 359.97345 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.3272 -1.5214 1.7928 6 7 3.2650 -0.4447 1.7061 7 6 4.0899 0.6095 1.1002 8 6 5.4474 0.0217 0.7192 9 6 6.0764 -0.6416 1.9466 10 6 5.1748 -1.7789 2.4322 11 1 5.0416 -2.5051 1.6303 12 7 5.7925 -2.4340 3.5877 13 6 6.7160 -3.4274 3.3988 14 1 6.9887 -3.7281 2.3980 15 6 7.3017 -4.0478 4.4938 16 7 6.9691 -3.6817 5.7135 17 14 8.5610 -5.4033 4.2362 18 1 8.7570 -5.6269 2.7813 19 1 9.8509 -5.0046 4.8546 20 1 8.0755 -6.6565 4.8680 21 6 3.8120 -1.2077 2.8362 22 6 2.0323 -0.7105 -1.2305 23 6 1.6934 -2.0326 -1.4512 24 6 2.1572 -2.6878 -2.5763 25 6 2.9532 -2.0173 -3.4888 26 9 3.4030 -2.6557 -4.5912 27 6 3.2886 -0.6900 -3.2702 28 9 4.0650 -0.0333 -4.1597 29 6 2.8269 -0.0381 -2.1397 30 1 -0.3633 0.5846 -0.8453 31 1 -0.3634 -1.0242 -0.0836 32 1 -0.3633 0.4398 0.9289 33 1 3.5955 0.9926 0.2075 34 1 4.2331 1.4184 1.8167 35 1 6.1013 0.8163 0.3599 36 1 5.3121 -0.7214 -0.0667 37 1 6.1891 0.0968 2.7406 38 1 7.0549 -1.0419 1.6814 39 1 5.5473 -2.1643 4.4866 40 1 7.3786 -4.1150 6.4786 41 1 3.9321 -0.5501 3.6971 42 1 3.1330 -2.0217 3.0902 43 1 1.0687 -2.5551 -0.7419 44 1 1.8949 -3.7217 -2.7457 45 1 3.0872 0.9959 -1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000973958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:58 Heat of formation + Delta-G solvation = -91.524698 kcal Electronic energy + Delta-G solvation = -30052.632487 eV Core-core repulsion = 25706.092288 eV Total energy + Delta-G solvation = -4346.540199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.70233 -48.77826 -40.74838 -39.04416 -37.44710 -34.66021 -34.06648 -32.19299 -31.31690 -31.20283 -29.39040 -28.46795 -25.83624 -24.55541 -23.69029 -23.59240 -22.13743 -22.05858 -19.98879 -18.91088 -18.19821 -17.83049 -17.26847 -17.21844 -16.62377 -16.54873 -15.80147 -15.55131 -15.18530 -15.01242 -14.76966 -14.40109 -14.24759 -14.09726 -14.02927 -13.50343 -13.44973 -13.37057 -13.07261 -12.97507 -12.83154 -12.46163 -12.36654 -12.03831 -11.88791 -11.77747 -11.38068 -11.03804 -10.97327 -10.93483 -10.66805 -10.45246 -10.39586 -10.08684 -9.85642 -9.69463 -9.36741 -8.94634 -8.87844 -8.47048 -7.01835 -5.80449 -3.10188 0.55206 0.66921 2.55316 2.94233 3.09727 3.41507 3.47627 3.48548 3.49475 4.00110 4.16562 4.24796 4.41901 4.56151 4.62577 4.68466 4.75079 4.85317 5.01283 5.10325 5.25200 5.32259 5.42369 5.47477 5.48265 5.52845 5.56550 5.62173 5.65669 5.72047 5.73267 5.76892 5.92136 6.00447 6.03769 6.10668 6.19813 6.35352 6.41134 6.50476 6.64045 6.83747 7.00446 7.48689 7.67532 8.18751 8.37510 9.48924 10.03656 10.38683 11.42052 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.003419 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.678893 B = 8187.144577 C = 9244.040468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.104 0.896 4 C 0.520 3.480 5 O -0.535 6.535 6 N -0.600 5.600 7 C 0.105 3.895 8 C -0.133 4.133 9 C -0.137 4.137 10 C 0.169 3.831 11 H 0.049 0.951 12 N -0.721 5.721 13 C -0.239 4.239 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.106 3.894 22 C -0.055 4.055 23 C -0.084 4.084 24 C -0.120 4.120 25 C 0.067 3.933 26 F -0.129 7.129 27 C 0.070 3.930 28 F -0.128 7.128 29 C -0.118 4.118 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 11.883 -17.161 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 H 0.122 0.878 4 C 0.307 3.693 5 O -0.412 6.412 6 N -0.333 5.333 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.178 4.178 10 C 0.058 3.942 11 H 0.067 0.933 12 N -0.362 5.362 13 C -0.370 4.370 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.016 4.016 22 C -0.056 4.056 23 C -0.102 4.102 24 C -0.138 4.138 25 C 0.047 3.953 26 F -0.107 7.107 27 C 0.050 3.950 28 F -0.107 7.107 29 C -0.137 4.137 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.618 11.294 -16.970 23.974 hybrid contribution 1.201 -0.580 -0.188 1.347 sum -11.417 10.714 -17.158 23.227 Atomic orbital electron populations 1.21680 0.91064 1.03624 1.02484 1.20375 0.98613 0.99983 0.90386 0.87800 1.20268 0.81368 0.82826 0.84870 1.90706 1.55618 1.35167 1.59687 1.48106 1.14961 1.36257 1.33967 1.21763 0.92171 0.89938 0.97920 1.21851 0.95383 1.00440 0.99564 1.22281 1.00654 0.99049 0.95779 1.20460 0.89416 0.92624 0.91684 0.93300 1.42313 1.48573 1.42351 1.02960 1.19242 1.14691 1.10423 0.92649 0.91138 1.24738 1.00599 1.00170 0.95197 1.69666 1.46403 1.44828 0.97028 0.86134 0.81083 0.81797 0.77282 1.20546 1.21822 1.21795 1.22028 0.96501 0.95975 0.87142 1.19337 0.97112 0.94265 0.94911 1.21100 0.98816 0.93782 0.96545 1.21119 0.97643 1.01347 0.93723 1.17738 1.00757 0.90017 0.86792 1.91536 1.87473 1.81384 1.50353 1.17563 0.96978 0.89755 0.90725 1.91539 1.72222 1.80446 1.66457 1.20930 0.98850 1.01278 0.92668 0.91673 0.91098 0.91450 0.90444 0.91168 0.91269 0.91940 0.92425 0.91540 0.78180 0.93486 0.91618 0.88906 0.83600 0.83382 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 8.51 37.16 0.32 -0.75 16 2 C -0.07 -0.65 2.11 -92.92 -0.20 -0.85 16 3 H 0.10 0.69 6.08 -51.93 -0.32 0.38 16 4 C 0.52 6.93 6.45 -10.98 -0.07 6.86 16 5 O -0.54 -9.03 15.61 5.56 0.09 -8.95 16 6 N -0.60 -8.15 2.98 -173.03 -0.52 -8.67 16 7 C 0.10 1.10 6.24 -3.93 -0.02 1.08 16 8 C -0.13 -1.63 6.06 -26.83 -0.16 -1.80 16 9 C -0.14 -2.27 5.47 -26.69 -0.15 -2.42 16 10 C 0.17 3.28 2.92 -67.82 -0.20 3.08 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 N -0.72 -17.70 5.12 -53.31 -0.27 -17.98 16 13 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 C 0.11 1.81 5.89 -3.71 -0.02 1.79 16 22 C -0.06 -0.51 4.68 -104.62 -0.49 -1.00 16 23 C -0.08 -0.83 8.76 -39.58 -0.35 -1.17 16 24 C -0.12 -1.15 10.02 -39.53 -0.40 -1.54 16 25 C 0.07 0.73 7.31 -39.37 -0.29 0.44 16 26 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 27 C 0.07 0.73 7.31 -39.37 -0.29 0.44 16 28 F -0.13 -1.45 17.18 2.25 0.04 -1.41 16 29 C -0.12 -1.01 9.02 -39.53 -0.36 -1.37 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.64 7.10 -51.93 -0.37 0.27 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.60 4.35 -51.93 -0.23 0.37 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.79 7.04 -51.93 -0.37 1.42 16 43 H 0.15 1.45 7.53 -52.49 -0.40 1.05 16 44 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.15 0.89 7.53 -52.49 -0.40 0.49 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -31.96 373.01 -8.37 -40.33 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.15 Total: 6.69 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.91 Total: -4.31 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.06 Total: -53.75 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.96 -8.37 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000973958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.195 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds