Wall clock time and date at job start Tue Mar 31 2020 21:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47714 * 2 1 4 4 C 1.50708 * 109.46773 * 120.00303 * 2 1 3 5 5 O 1.21280 * 119.99813 * 23.63493 * 4 2 1 6 6 N 1.34772 * 119.99658 * 203.63798 * 4 2 1 7 7 C 1.46929 * 120.63237 * 4.82939 * 6 4 2 8 8 C 1.52760 * 109.00664 * 233.58470 * 7 6 4 9 9 C 1.53038 * 109.38608 * 305.58649 * 8 7 6 10 10 C 1.53039 * 109.53743 * 61.24024 * 9 8 7 11 11 H 1.09005 * 109.49425 * 58.58412 * 10 9 8 12 12 N 1.46494 * 109.52559 * 178.66670 * 10 9 8 13 13 C 1.36938 * 120.00105 * 274.85837 * 12 10 9 14 14 H 1.07998 * 120.00351 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99889 * 179.97438 * 13 12 10 16 16 N 1.31621 * 120.00326 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00032 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46982 * 120.00263 * 17 15 13 20 20 H 1.48503 * 109.47059 * 240.00504 * 17 15 13 21 21 C 1.46924 * 120.63258 * 185.11148 * 6 4 2 22 22 C 1.50702 * 109.46700 * 239.99903 * 2 1 3 23 23 C 1.38257 * 119.96493 * 300.25425 * 22 2 1 24 24 C 1.38214 * 120.06701 * 180.25775 * 23 22 2 25 25 C 1.38414 * 120.00225 * 359.49403 * 24 23 22 26 26 F 1.35097 * 120.03424 * 180.23285 * 25 24 23 27 27 C 1.38642 * 119.92786 * 0.25269 * 25 24 23 28 28 F 1.35099 * 120.03500 * 180.02562 * 27 25 24 29 29 C 1.38210 * 119.96263 * 120.00780 * 22 2 1 30 30 H 1.09004 * 109.46745 * 55.33087 * 1 2 3 31 31 H 1.08993 * 109.47389 * 175.33316 * 1 2 3 32 32 H 1.09005 * 109.47101 * 295.33561 * 1 2 3 33 33 H 1.08999 * 109.58421 * 353.41923 * 7 6 4 34 34 H 1.08998 * 109.58718 * 113.84426 * 7 6 4 35 35 H 1.09003 * 109.56189 * 185.55143 * 8 7 6 36 36 H 1.08998 * 109.38660 * 65.51740 * 8 7 6 37 37 H 1.09008 * 109.45742 * 301.22185 * 9 8 7 38 38 H 1.08998 * 109.45106 * 181.25291 * 9 8 7 39 39 H 0.97004 * 120.00015 * 94.85875 * 12 10 9 40 40 H 0.96992 * 120.00279 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.58665 * 246.15965 * 21 6 4 42 42 H 1.09001 * 109.58336 * 6.43498 * 21 6 4 43 43 H 1.07998 * 119.97246 * 0.02562 * 23 22 2 44 44 H 1.08003 * 119.99878 * 179.77114 * 24 23 22 45 45 H 1.07998 * 120.00186 * 359.97345 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.3272 -1.5214 1.7928 6 7 3.2650 -0.4447 1.7061 7 6 4.0899 0.6095 1.1002 8 6 5.4474 0.0217 0.7192 9 6 6.0764 -0.6416 1.9466 10 6 5.1748 -1.7789 2.4322 11 1 5.0416 -2.5051 1.6303 12 7 5.7925 -2.4340 3.5877 13 6 6.7160 -3.4274 3.3988 14 1 6.9887 -3.7281 2.3980 15 6 7.3017 -4.0478 4.4938 16 7 6.9691 -3.6817 5.7135 17 14 8.5610 -5.4033 4.2362 18 1 8.7570 -5.6269 2.7813 19 1 9.8509 -5.0046 4.8546 20 1 8.0755 -6.6565 4.8680 21 6 3.8120 -1.2077 2.8362 22 6 2.0323 -0.7105 -1.2305 23 6 1.6934 -2.0326 -1.4512 24 6 2.1572 -2.6878 -2.5763 25 6 2.9532 -2.0173 -3.4888 26 9 3.4030 -2.6557 -4.5912 27 6 3.2886 -0.6900 -3.2702 28 9 4.0650 -0.0333 -4.1597 29 6 2.8269 -0.0381 -2.1397 30 1 -0.3633 0.5846 -0.8453 31 1 -0.3634 -1.0242 -0.0836 32 1 -0.3633 0.4398 0.9289 33 1 3.5955 0.9926 0.2075 34 1 4.2331 1.4184 1.8167 35 1 6.1013 0.8163 0.3599 36 1 5.3121 -0.7214 -0.0667 37 1 6.1891 0.0968 2.7406 38 1 7.0549 -1.0419 1.6814 39 1 5.5473 -2.1643 4.4866 40 1 7.3786 -4.1150 6.4786 41 1 3.9321 -0.5501 3.6971 42 1 3.1330 -2.0217 3.0902 43 1 1.0687 -2.5551 -0.7419 44 1 1.8949 -3.7217 -2.7457 45 1 3.0872 0.9959 -1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000973958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:57 Heat of formation + Delta-G solvation = -110.085097 kcal Electronic energy + Delta-G solvation = -30053.437327 eV Core-core repulsion = 25706.092288 eV Total energy + Delta-G solvation = -4347.345038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.53122 -49.61384 -41.72502 -39.95558 -38.70345 -36.23611 -35.03591 -33.71939 -32.77862 -31.96375 -30.28619 -29.97859 -26.88897 -26.05569 -24.95792 -24.35852 -23.38988 -23.05479 -21.32050 -19.99958 -19.18730 -19.00340 -18.72880 -18.09173 -17.54881 -17.37583 -16.82809 -16.70261 -16.55361 -16.03220 -15.78138 -15.57972 -15.52467 -15.23005 -15.09625 -14.87668 -14.74450 -14.51587 -14.16412 -13.91668 -13.78454 -13.67131 -13.24922 -13.06084 -12.92198 -12.79404 -12.61824 -12.53853 -12.32939 -12.20574 -12.13577 -11.93020 -11.84537 -11.71821 -11.59576 -10.93427 -10.84676 -10.10838 -9.69553 -9.66344 -9.03981 -7.97505 -5.26718 -0.23000 -0.04794 1.44708 1.45796 1.53372 1.55560 1.93770 2.28304 2.54461 2.73579 3.23041 3.35649 3.41746 3.46750 3.59832 3.78085 3.91059 4.00645 4.02597 4.06173 4.10330 4.15467 4.26710 4.35630 4.37095 4.58341 4.65496 4.74636 4.77528 4.80024 4.84678 4.88077 4.92780 4.95550 5.00127 5.07117 5.15860 5.25679 5.36699 5.40418 5.43015 5.51450 5.58989 5.66380 6.24666 6.44569 7.13854 7.30737 8.03694 8.27749 9.25938 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.003419 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.678893 B = 8187.144577 C = 9244.040468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 H 0.143 0.857 4 C 0.514 3.486 5 O -0.578 6.578 6 N -0.601 5.601 7 C 0.101 3.899 8 C -0.125 4.125 9 C -0.128 4.128 10 C 0.168 3.832 11 H 0.028 0.972 12 N -0.735 5.735 13 C -0.238 4.238 14 H 0.071 0.929 15 C -0.071 4.071 16 N -0.967 5.967 17 Si 0.969 3.031 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.294 1.294 21 C 0.120 3.880 22 C -0.056 4.056 23 C -0.092 4.092 24 C -0.122 4.122 25 C 0.049 3.951 26 F -0.141 7.141 27 C 0.060 3.940 28 F -0.134 7.134 29 C -0.102 4.102 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.139 0.861 44 H 0.159 0.841 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 14.415 -19.067 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.081 4.081 3 H 0.161 0.839 4 C 0.303 3.697 5 O -0.458 6.458 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.163 4.163 9 C -0.169 4.169 10 C 0.059 3.941 11 H 0.046 0.954 12 N -0.376 5.376 13 C -0.370 4.370 14 H 0.089 0.911 15 C -0.263 4.263 16 N -0.617 5.617 17 Si 0.798 3.202 18 H -0.193 1.193 19 H -0.217 1.217 20 H -0.221 1.221 21 C -0.004 4.004 22 C -0.057 4.057 23 C -0.111 4.111 24 C -0.140 4.140 25 C 0.029 3.971 26 F -0.119 7.119 27 C 0.040 3.960 28 F -0.113 7.113 29 C -0.120 4.120 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.206 0.794 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.156 0.844 44 H 0.176 0.824 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.786 13.865 -18.947 26.734 hybrid contribution 1.185 -1.378 0.367 1.854 sum -11.601 12.487 -18.580 25.214 Atomic orbital electron populations 1.21707 0.90356 1.03237 1.03531 1.20410 0.99141 1.01058 0.87491 0.83942 1.21119 0.80680 0.82251 0.85604 1.90694 1.56796 1.37089 1.61177 1.48185 1.15573 1.36495 1.33075 1.22077 0.90883 0.89090 0.99923 1.21806 0.96732 1.00954 0.96842 1.22072 0.98911 0.97881 0.97991 1.20614 0.91120 0.92983 0.89391 0.95386 1.42490 1.48579 1.42525 1.03958 1.19542 1.14454 1.10445 0.92552 0.91137 1.25499 1.03000 1.02779 0.95047 1.69809 1.47963 1.46336 0.97640 0.85140 0.78611 0.78819 0.77606 1.19321 1.21723 1.22124 1.21550 0.94428 0.95641 0.88829 1.19379 0.97248 0.93937 0.95147 1.21169 0.98935 0.94538 0.96421 1.21227 0.97377 1.01965 0.93468 1.18004 1.01549 0.90683 0.86860 1.91502 1.87726 1.81720 1.50988 1.17757 0.97320 0.89600 0.91354 1.91524 1.72479 1.80469 1.66837 1.21192 0.97146 1.02582 0.91108 0.88828 0.92670 0.91800 0.86417 0.89225 0.87966 0.92566 0.92326 0.93954 0.79415 0.93945 0.91312 0.91974 0.84357 0.82353 0.79867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.51 71.98 0.61 -1.14 16 2 C -0.06 -0.87 2.11 -12.28 -0.03 -0.89 16 3 H 0.14 0.98 6.08 -2.39 -0.01 0.97 16 4 C 0.51 12.83 6.45 87.66 0.57 13.40 16 5 O -0.58 -19.64 15.61 -3.03 -0.05 -19.68 16 6 N -0.60 -15.14 2.98 -819.75 -2.44 -17.58 16 7 C 0.10 1.68 6.24 86.22 0.54 2.22 16 8 C -0.12 -2.61 6.06 30.53 0.19 -2.42 16 9 C -0.13 -4.12 5.47 30.62 0.17 -3.95 16 10 C 0.17 6.61 2.92 45.07 0.13 6.75 16 11 H 0.03 1.21 8.08 -2.38 -0.02 1.19 16 12 N -0.74 -37.21 5.12 -322.59 -1.65 -38.87 16 13 C -0.24 -13.33 9.93 84.03 0.83 -12.49 16 14 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 17 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 C 0.12 4.11 5.89 86.36 0.51 4.62 16 22 C -0.06 -0.86 4.68 -19.87 -0.09 -0.95 16 23 C -0.09 -1.70 8.76 22.27 0.20 -1.51 16 24 C -0.12 -2.24 10.02 22.31 0.22 -2.02 16 25 C 0.05 1.01 7.31 22.41 0.16 1.18 16 26 F -0.14 -3.32 17.18 44.97 0.77 -2.55 16 27 C 0.06 1.09 7.31 22.41 0.16 1.26 16 28 F -0.13 -2.73 17.18 44.97 0.77 -1.95 16 29 C -0.10 -1.31 9.02 22.31 0.20 -1.11 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.92 7.10 -2.39 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.12 1.03 4.35 -2.39 -0.01 1.02 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.51 7.04 -2.39 -0.02 2.49 16 43 H 0.14 2.75 7.53 -2.91 -0.02 2.73 16 44 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 45 H 0.18 0.98 7.53 -2.91 -0.02 0.96 16 Total: -1.00 -73.17 373.01 4.86 -68.31 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.30 Total: 23.42 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.84 Total: -0.69 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -3.81 Total: -115.42 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 1.55 Total: -4.50 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -73.17 4.86 -68.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000973958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.772 kcal (2) G-P(sol) polarization free energy of solvation -73.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds