Wall clock time and date at job start Tue Mar 31 2020 21:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46859 * 2 1 4 4 C 1.50704 * 109.47146 * 119.99841 * 2 1 3 5 5 O 1.21276 * 119.99769 * 113.73392 * 4 2 1 6 6 N 1.34778 * 119.99841 * 293.73600 * 4 2 1 7 7 C 1.46930 * 120.62770 * 176.38833 * 6 4 2 8 8 C 1.53189 * 108.77322 * 126.41126 * 7 6 4 9 9 C 1.53040 * 109.31491 * 54.63323 * 8 7 6 10 10 C 1.53035 * 109.53842 * 298.63470 * 9 8 7 11 11 H 1.09002 * 109.49606 * 301.37520 * 10 9 8 12 12 N 1.46502 * 109.49801 * 181.31740 * 10 9 8 13 13 C 1.36934 * 120.00438 * 84.99813 * 12 10 9 14 14 H 1.08001 * 119.99754 * 359.72691 * 13 12 10 15 15 C 1.38806 * 120.00531 * 179.72262 * 13 12 10 16 16 N 1.31621 * 119.99800 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00434 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46859 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46940 * 120.00120 * 17 15 13 20 20 H 1.48496 * 109.47482 * 240.00491 * 17 15 13 21 21 C 1.46926 * 120.63172 * 356.40786 * 6 4 2 22 22 C 1.50698 * 109.47109 * 240.00116 * 2 1 3 23 23 C 1.38260 * 119.96190 * 299.72309 * 22 2 1 24 24 C 1.38216 * 120.06605 * 179.72993 * 23 22 2 25 25 C 1.38406 * 120.00427 * 0.54595 * 24 23 22 26 26 F 1.35091 * 120.03984 * 179.75137 * 25 24 23 27 27 C 1.38656 * 119.92419 * 359.73002 * 25 24 23 28 28 F 1.35103 * 120.02814 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.96693 * 120.00058 * 22 2 1 30 30 H 1.09000 * 109.46863 * 186.98217 * 1 2 3 31 31 H 1.09000 * 109.47629 * 306.98149 * 1 2 3 32 32 H 1.08998 * 109.47071 * 66.97999 * 1 2 3 33 33 H 1.08990 * 109.58598 * 6.62417 * 7 6 4 34 34 H 1.08998 * 109.69796 * 246.26342 * 7 6 4 35 35 H 1.08996 * 109.50003 * 294.68004 * 8 7 6 36 36 H 1.09005 * 109.52180 * 174.59691 * 8 7 6 37 37 H 1.09001 * 109.46022 * 178.60919 * 9 8 7 38 38 H 1.09002 * 109.46141 * 58.65216 * 9 8 7 39 39 H 0.97006 * 120.00124 * 264.71875 * 12 10 9 40 40 H 0.96999 * 119.99912 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.58852 * 113.79857 * 21 6 4 42 42 H 1.09005 * 109.58505 * 353.37219 * 21 6 4 43 43 H 1.07995 * 119.96436 * 0.02562 * 23 22 2 44 44 H 1.08004 * 119.99389 * 180.27845 * 24 23 22 45 45 H 1.07997 * 119.99566 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6330 -1.7584 1.1228 6 7 1.8140 -0.1810 2.4506 7 6 2.2277 -0.8998 3.6634 8 6 3.1014 0.0285 4.5128 9 6 2.3440 1.3309 4.7816 10 6 2.0433 2.0312 3.4545 11 1 2.9771 2.2331 2.9299 12 7 1.3459 3.2931 3.7146 13 6 2.0620 4.4252 3.9986 14 1 3.1407 4.3869 4.0352 15 6 1.4016 5.6221 4.2394 16 7 0.0869 5.6688 4.1952 17 14 2.3784 7.1664 4.6275 18 1 3.8293 6.8499 4.6173 19 1 2.0913 8.2039 3.6046 20 1 1.9913 7.6730 5.9687 21 6 1.1574 1.1257 2.5931 22 6 2.0323 -0.7104 -1.2305 23 6 1.7025 -2.0357 -1.4456 24 6 2.1574 -2.6877 -2.5762 25 6 2.9533 -2.0173 -3.4888 26 9 3.4025 -2.6553 -4.5915 27 6 3.2887 -0.6898 -3.2700 28 9 4.0650 -0.0332 -4.1597 29 6 2.8269 -0.0380 -2.1398 30 1 -0.3633 -1.0201 0.1249 31 1 -0.3634 0.6182 0.8209 32 1 -0.3633 0.4019 -0.9458 33 1 2.7982 -1.7861 3.3862 34 1 1.3470 -1.1956 4.2336 35 1 4.0253 0.2487 3.9780 36 1 3.3362 -0.4578 5.4597 37 1 2.9538 1.9833 5.4065 38 1 1.4085 1.1077 5.2945 39 1 0.3771 3.3276 3.6817 40 1 -0.3746 6.5051 4.3638 41 1 0.1883 0.9970 3.0750 42 1 1.0219 1.5757 1.6096 43 1 1.0849 -2.5606 -0.7319 44 1 1.8954 -3.7218 -2.7454 45 1 3.0877 0.9958 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000973960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:05 Heat of formation + Delta-G solvation = -91.468356 kcal Electronic energy + Delta-G solvation = -29445.045225 eV Core-core repulsion = 25098.507469 eV Total energy + Delta-G solvation = -4346.537756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.61618 -48.69285 -40.70776 -39.04924 -37.34659 -34.45732 -34.37891 -32.26469 -31.38528 -31.09248 -29.23577 -28.32355 -25.86944 -24.38110 -23.88178 -23.48867 -22.60719 -21.48406 -20.10876 -19.00912 -18.11831 -17.64975 -17.39074 -16.96698 -16.72152 -16.44878 -15.65157 -15.51325 -15.10916 -14.80158 -14.65871 -14.62337 -14.27969 -14.13761 -14.05515 -13.67020 -13.47113 -13.23327 -13.11106 -12.92188 -12.75938 -12.44904 -12.21845 -12.04785 -11.80611 -11.65250 -11.28133 -11.17847 -11.01359 -10.96230 -10.72851 -10.49426 -10.43133 -10.13045 -9.79538 -9.71338 -9.24118 -9.01313 -8.80699 -8.50950 -7.10381 -5.88510 -3.18566 0.69119 0.81325 2.60209 2.90954 3.24763 3.36403 3.43279 3.44597 3.58866 4.09213 4.21584 4.30780 4.46357 4.56296 4.78935 4.83950 4.92232 5.01264 5.09648 5.18837 5.21929 5.36403 5.41277 5.48044 5.51659 5.54722 5.57294 5.60705 5.70698 5.72512 5.76723 5.82279 5.86807 5.98797 6.05138 6.17230 6.25274 6.31023 6.35024 6.53379 6.62701 6.74717 6.92845 7.44503 7.61043 8.15704 8.29416 9.41247 9.94477 10.29468 11.33746 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.002798 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.750981 B =10004.204582 C =11177.065434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.112 0.888 4 C 0.523 3.477 5 O -0.543 6.543 6 N -0.600 5.600 7 C 0.113 3.887 8 C -0.133 4.133 9 C -0.137 4.137 10 C 0.166 3.834 11 H 0.051 0.949 12 N -0.722 5.722 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.096 3.904 22 C -0.045 4.045 23 C -0.062 4.062 24 C -0.128 4.128 25 C 0.064 3.936 26 F -0.132 7.132 27 C 0.064 3.936 28 F -0.130 7.130 29 C -0.117 4.117 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -16.196 -9.893 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.130 0.870 4 C 0.310 3.690 5 O -0.421 6.421 6 N -0.333 5.333 7 C -0.009 4.009 8 C -0.172 4.172 9 C -0.178 4.178 10 C 0.056 3.944 11 H 0.069 0.931 12 N -0.363 5.363 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.027 4.027 22 C -0.046 4.046 23 C -0.080 4.080 24 C -0.147 4.147 25 C 0.044 3.956 26 F -0.111 7.111 27 C 0.044 3.956 28 F -0.109 7.109 29 C -0.136 4.136 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.089 -16.596 -9.992 19.403 hybrid contribution 0.464 1.095 0.024 1.189 sum 1.553 -15.501 -9.968 18.495 Atomic orbital electron populations 1.21926 0.91157 1.03276 1.04015 1.20320 0.98413 1.00756 0.90123 0.86967 1.20283 0.79160 0.85299 0.84224 1.90682 1.41533 1.23727 1.86183 1.48055 1.59211 1.20555 1.05479 1.21610 0.98804 0.95523 0.85001 1.21926 0.98950 0.96986 0.99302 1.22275 0.99937 0.95001 1.00575 1.20498 0.94841 0.86371 0.92736 0.93103 1.42319 1.06035 1.03614 1.84316 1.19230 0.90897 0.86862 1.40183 0.91087 1.24736 0.95582 0.97879 1.02432 1.69658 1.06052 1.26134 1.56027 0.86140 0.79031 0.83502 0.77636 1.20519 1.21780 1.21813 1.22317 0.96485 0.81924 1.02008 1.19257 0.96597 0.94087 0.94629 1.20888 0.98230 0.93474 0.95383 1.21042 0.98484 1.01194 0.93996 1.17702 1.01089 0.90045 0.86780 1.91512 1.87589 1.81437 1.50530 1.17562 0.97401 0.89769 0.90869 1.91529 1.72318 1.80533 1.66504 1.20989 0.98417 1.01502 0.92653 0.91829 0.90333 0.90876 0.89444 0.91634 0.91940 0.91401 0.91551 0.92449 0.78193 0.93444 0.91083 0.89309 0.84333 0.83741 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.55 37.16 0.32 -0.97 16 2 C -0.07 -0.79 2.05 -92.92 -0.19 -0.98 16 3 H 0.11 1.15 6.93 -51.93 -0.36 0.79 16 4 C 0.52 6.84 6.90 -10.98 -0.08 6.76 16 5 O -0.54 -8.42 14.28 5.56 0.08 -8.34 16 6 N -0.60 -7.77 2.97 -172.77 -0.51 -8.28 16 7 C 0.11 1.40 6.44 -3.71 -0.02 1.37 16 8 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 9 C -0.14 -2.19 5.46 -26.69 -0.15 -2.34 16 10 C 0.17 2.90 2.92 -67.81 -0.20 2.70 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 N -0.72 -16.16 5.13 -53.31 -0.27 -16.44 16 13 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 16 N -0.93 -26.41 13.06 55.49 0.72 -25.68 16 17 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.10 1.32 4.55 -3.71 -0.02 1.30 16 22 C -0.04 -0.48 4.46 -104.62 -0.47 -0.95 16 23 C -0.06 -0.63 7.92 -39.58 -0.31 -0.94 16 24 C -0.13 -1.26 10.02 -39.53 -0.40 -1.65 16 25 C 0.06 0.73 7.31 -39.36 -0.29 0.45 16 26 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 27 C 0.06 0.76 7.31 -39.37 -0.29 0.47 16 28 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 29 C -0.12 -1.27 9.65 -39.53 -0.38 -1.65 16 30 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.08 0.71 5.87 -51.93 -0.30 0.41 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.38 9.08 7.80 -40.82 -0.32 8.76 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.14 4.83 -51.93 -0.25 0.89 16 43 H 0.14 1.30 7.45 -52.49 -0.39 0.91 16 44 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.15 1.38 7.94 -52.49 -0.42 0.96 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -29.84 370.46 -8.37 -38.20 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.15 Total: 6.81 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.87 Total: -5.01 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.06 Total: -50.40 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.84 -8.37 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000973960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.264 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds