Wall clock time and date at job start Tue Mar 31 2020 21:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46859 * 2 1 4 4 C 1.50704 * 109.47146 * 119.99841 * 2 1 3 5 5 O 1.21276 * 119.99769 * 113.73392 * 4 2 1 6 6 N 1.34778 * 119.99841 * 293.73600 * 4 2 1 7 7 C 1.46930 * 120.62770 * 176.38833 * 6 4 2 8 8 C 1.53189 * 108.77322 * 126.41126 * 7 6 4 9 9 C 1.53040 * 109.31491 * 54.63323 * 8 7 6 10 10 C 1.53035 * 109.53842 * 298.63470 * 9 8 7 11 11 H 1.09002 * 109.49606 * 301.37520 * 10 9 8 12 12 N 1.46502 * 109.49801 * 181.31740 * 10 9 8 13 13 C 1.36934 * 120.00438 * 84.99813 * 12 10 9 14 14 H 1.08001 * 119.99754 * 359.72691 * 13 12 10 15 15 C 1.38806 * 120.00531 * 179.72262 * 13 12 10 16 16 N 1.31621 * 119.99800 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00434 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46859 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46940 * 120.00120 * 17 15 13 20 20 H 1.48496 * 109.47482 * 240.00491 * 17 15 13 21 21 C 1.46926 * 120.63172 * 356.40786 * 6 4 2 22 22 C 1.50698 * 109.47109 * 240.00116 * 2 1 3 23 23 C 1.38260 * 119.96190 * 299.72309 * 22 2 1 24 24 C 1.38216 * 120.06605 * 179.72993 * 23 22 2 25 25 C 1.38406 * 120.00427 * 0.54595 * 24 23 22 26 26 F 1.35091 * 120.03984 * 179.75137 * 25 24 23 27 27 C 1.38656 * 119.92419 * 359.73002 * 25 24 23 28 28 F 1.35103 * 120.02814 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.96693 * 120.00058 * 22 2 1 30 30 H 1.09000 * 109.46863 * 186.98217 * 1 2 3 31 31 H 1.09000 * 109.47629 * 306.98149 * 1 2 3 32 32 H 1.08998 * 109.47071 * 66.97999 * 1 2 3 33 33 H 1.08990 * 109.58598 * 6.62417 * 7 6 4 34 34 H 1.08998 * 109.69796 * 246.26342 * 7 6 4 35 35 H 1.08996 * 109.50003 * 294.68004 * 8 7 6 36 36 H 1.09005 * 109.52180 * 174.59691 * 8 7 6 37 37 H 1.09001 * 109.46022 * 178.60919 * 9 8 7 38 38 H 1.09002 * 109.46141 * 58.65216 * 9 8 7 39 39 H 0.97006 * 120.00124 * 264.71875 * 12 10 9 40 40 H 0.96999 * 119.99912 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.58852 * 113.79857 * 21 6 4 42 42 H 1.09005 * 109.58505 * 353.37219 * 21 6 4 43 43 H 1.07995 * 119.96436 * 0.02562 * 23 22 2 44 44 H 1.08004 * 119.99389 * 180.27845 * 24 23 22 45 45 H 1.07997 * 119.99566 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6330 -1.7584 1.1228 6 7 1.8140 -0.1810 2.4506 7 6 2.2277 -0.8998 3.6634 8 6 3.1014 0.0285 4.5128 9 6 2.3440 1.3309 4.7816 10 6 2.0433 2.0312 3.4545 11 1 2.9771 2.2331 2.9299 12 7 1.3459 3.2931 3.7146 13 6 2.0620 4.4252 3.9986 14 1 3.1407 4.3869 4.0352 15 6 1.4016 5.6221 4.2394 16 7 0.0869 5.6688 4.1952 17 14 2.3784 7.1664 4.6275 18 1 3.8293 6.8499 4.6173 19 1 2.0913 8.2039 3.6046 20 1 1.9913 7.6730 5.9687 21 6 1.1574 1.1257 2.5931 22 6 2.0323 -0.7104 -1.2305 23 6 1.7025 -2.0357 -1.4456 24 6 2.1574 -2.6877 -2.5762 25 6 2.9533 -2.0173 -3.4888 26 9 3.4025 -2.6553 -4.5915 27 6 3.2887 -0.6898 -3.2700 28 9 4.0650 -0.0332 -4.1597 29 6 2.8269 -0.0380 -2.1398 30 1 -0.3633 -1.0201 0.1249 31 1 -0.3634 0.6182 0.8209 32 1 -0.3633 0.4019 -0.9458 33 1 2.7982 -1.7861 3.3862 34 1 1.3470 -1.1956 4.2336 35 1 4.0253 0.2487 3.9780 36 1 3.3362 -0.4578 5.4597 37 1 2.9538 1.9833 5.4065 38 1 1.4085 1.1077 5.2945 39 1 0.3771 3.3276 3.6817 40 1 -0.3746 6.5051 4.3638 41 1 0.1883 0.9970 3.0750 42 1 1.0219 1.5757 1.6096 43 1 1.0849 -2.5606 -0.7319 44 1 1.8954 -3.7218 -2.7454 45 1 3.0877 0.9958 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000973960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:04 Heat of formation + Delta-G solvation = -107.048826 kcal Electronic energy + Delta-G solvation = -29445.720845 eV Core-core repulsion = 25098.507469 eV Total energy + Delta-G solvation = -4347.213376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.53312 -49.61747 -41.70514 -39.99091 -38.55810 -36.01242 -35.32880 -33.64509 -32.84350 -31.92345 -30.17073 -29.78992 -26.89851 -25.74188 -25.23347 -24.31170 -23.70122 -22.62850 -21.32154 -20.14253 -19.19197 -18.96208 -18.53051 -17.97346 -17.71337 -17.36634 -16.85080 -16.64618 -16.26492 -16.04516 -15.70527 -15.55407 -15.47828 -15.27446 -15.22199 -14.96298 -14.77401 -14.40590 -14.17656 -13.91756 -13.83697 -13.50619 -13.20323 -13.00428 -12.89562 -12.82598 -12.61710 -12.48882 -12.30519 -12.16030 -12.08126 -12.01498 -11.83424 -11.66210 -11.52509 -10.95058 -10.68734 -10.07132 -9.67418 -9.64063 -8.97678 -7.92649 -5.20266 -0.16163 -0.00140 1.48864 1.50789 1.57660 1.59107 1.92101 2.37580 2.58670 2.74970 3.22384 3.36619 3.41271 3.43668 3.63401 3.92376 3.95616 4.04121 4.05633 4.06328 4.13928 4.16203 4.25231 4.39377 4.41580 4.59055 4.65565 4.76095 4.78090 4.81205 4.86408 4.88412 4.94714 4.96416 5.03791 5.07901 5.13086 5.26281 5.37039 5.41397 5.51495 5.53051 5.61773 5.70973 6.29192 6.39540 7.12136 7.37736 8.10296 8.34757 9.30165 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.002798 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.750981 B =10004.204582 C =11177.065434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 H 0.116 0.884 4 C 0.523 3.477 5 O -0.567 6.567 6 N -0.599 5.599 7 C 0.112 3.888 8 C -0.122 4.122 9 C -0.130 4.130 10 C 0.162 3.838 11 H 0.037 0.963 12 N -0.730 5.730 13 C -0.233 4.233 14 H 0.070 0.930 15 C -0.068 4.068 16 N -0.963 5.963 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.294 1.294 20 H -0.296 1.296 21 C 0.110 3.890 22 C -0.050 4.050 23 C -0.062 4.062 24 C -0.120 4.120 25 C 0.051 3.949 26 F -0.139 7.139 27 C 0.047 3.953 28 F -0.141 7.141 29 C -0.119 4.119 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.150 0.850 44 H 0.170 0.830 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.440 -17.465 -9.853 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 H 0.134 0.866 4 C 0.312 3.688 5 O -0.446 6.446 6 N -0.331 5.331 7 C -0.009 4.009 8 C -0.161 4.161 9 C -0.170 4.170 10 C 0.053 3.947 11 H 0.055 0.945 12 N -0.371 5.371 13 C -0.365 4.365 14 H 0.088 0.912 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.792 3.208 18 H -0.195 1.195 19 H -0.222 1.222 20 H -0.224 1.224 21 C -0.014 4.014 22 C -0.051 4.051 23 C -0.080 4.080 24 C -0.139 4.139 25 C 0.031 3.969 26 F -0.118 7.118 27 C 0.027 3.973 28 F -0.119 7.119 29 C -0.138 4.138 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.168 0.832 44 H 0.187 0.813 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.961 -17.903 -9.955 20.507 hybrid contribution 0.567 1.397 0.026 1.508 sum 1.528 -16.505 -9.929 19.322 Atomic orbital electron populations 1.21933 0.89566 1.03895 1.04656 1.20333 0.99637 1.00454 0.88814 0.86636 1.20655 0.78481 0.85018 0.84667 1.90674 1.42560 1.24873 1.86492 1.48054 1.59102 1.20071 1.05917 1.21675 0.99378 0.95104 0.84781 1.21835 0.98150 0.95559 1.00529 1.22109 0.99954 0.95954 0.99006 1.20667 0.94590 0.85410 0.94019 0.94488 1.42423 1.05743 1.04586 1.84304 1.19501 0.91073 0.87899 1.38058 0.91190 1.25387 0.96405 1.00479 1.03785 1.69777 1.07233 1.26307 1.58059 0.85242 0.78346 0.80407 0.76778 1.19503 1.22159 1.22354 1.22083 0.95794 0.81645 1.01848 1.19352 0.96626 0.94486 0.94592 1.21075 0.98059 0.93309 0.95553 1.21293 0.97272 1.02199 0.93112 1.17930 1.01787 0.90108 0.87080 1.91491 1.87797 1.81524 1.50984 1.17787 0.98028 0.90214 0.91291 1.91496 1.72727 1.80793 1.66932 1.21112 0.98266 1.02074 0.92343 0.91029 0.90508 0.89639 0.89401 0.89939 0.92799 0.89201 0.93954 0.92335 0.79009 0.94047 0.90157 0.88262 0.83236 0.81262 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.55 71.98 0.62 -1.53 16 2 C -0.07 -1.36 2.05 -12.29 -0.03 -1.39 16 3 H 0.12 2.14 6.93 -2.39 -0.02 2.12 16 4 C 0.52 12.58 6.90 87.66 0.60 13.18 16 5 O -0.57 -16.41 14.28 -3.02 -0.04 -16.46 16 6 N -0.60 -14.21 2.97 -818.91 -2.43 -16.64 16 7 C 0.11 2.50 6.44 86.36 0.56 3.06 16 8 C -0.12 -2.92 6.08 30.67 0.19 -2.73 16 9 C -0.13 -4.01 5.46 30.62 0.17 -3.84 16 10 C 0.16 5.52 2.92 45.07 0.13 5.65 16 11 H 0.04 1.36 8.08 -2.39 -0.02 1.35 16 12 N -0.73 -32.49 5.13 -322.58 -1.65 -34.14 16 13 C -0.23 -11.97 9.93 84.03 0.83 -11.14 16 14 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 15 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 16 N -0.96 -55.08 13.06 21.65 0.28 -54.80 16 17 Si 0.96 44.08 29.55 68.60 2.03 46.11 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 21 C 0.11 2.82 4.55 86.36 0.39 3.21 16 22 C -0.05 -0.98 4.46 -19.87 -0.09 -1.07 16 23 C -0.06 -1.13 7.92 22.27 0.18 -0.95 16 24 C -0.12 -2.12 10.02 22.30 0.22 -1.90 16 25 C 0.05 1.12 7.31 22.41 0.16 1.29 16 26 F -0.14 -3.31 17.18 44.97 0.77 -2.53 16 27 C 0.05 1.09 7.31 22.41 0.16 1.25 16 28 F -0.14 -3.62 17.18 44.97 0.77 -2.85 16 29 C -0.12 -2.46 9.65 22.30 0.22 -2.25 16 30 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 31 H 0.08 1.20 5.87 -2.39 -0.01 1.18 16 32 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.09 2.02 7.00 -2.39 -0.02 2.01 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.38 17.78 7.80 -92.70 -0.72 17.06 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.10 2.36 4.83 -2.38 -0.01 2.35 16 43 H 0.15 2.40 7.45 -2.91 -0.02 2.38 16 44 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.16 2.80 7.94 -2.91 -0.02 2.77 16 Total: -1.00 -63.42 370.46 4.81 -58.60 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.30 Total: 25.05 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.78 Total: -2.35 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.80 Total: -105.59 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.04 Total: -16.46 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.55 Total: -5.38 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.42 4.81 -58.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000973960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.445 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds