Wall clock time and date at job start Tue Mar 31 2020 21:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47364 * 120.00143 * 2 1 3 5 5 O 1.21288 * 119.99950 * 119.99657 * 4 2 1 6 6 N 1.34773 * 120.00083 * 299.99940 * 4 2 1 7 7 C 1.46507 * 120.00079 * 179.97438 * 6 4 2 8 8 C 1.53034 * 109.45933 * 275.07016 * 7 6 4 9 9 C 1.53197 * 109.31218 * 178.61600 * 8 7 6 10 10 N 1.46926 * 108.77371 * 54.63105 * 9 8 7 11 11 C 1.36940 * 120.62506 * 126.41951 * 10 9 8 12 12 H 1.08000 * 119.99839 * 331.81538 * 11 10 9 13 13 C 1.38810 * 119.99907 * 151.82707 * 11 10 9 14 14 N 1.31626 * 119.99853 * 343.06944 * 13 11 10 15 15 Si 1.86799 * 120.00180 * 163.07676 * 13 11 10 16 16 H 1.48504 * 109.47364 * 59.99643 * 15 13 11 17 17 H 1.48496 * 109.47120 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46771 * 299.99405 * 15 13 11 19 19 C 1.46917 * 118.74059 * 306.39410 * 10 9 8 20 20 C 1.53042 * 109.45735 * 155.00151 * 7 6 4 21 21 C 1.50707 * 109.47088 * 240.00353 * 2 1 3 22 22 C 1.38253 * 119.96217 * 299.72659 * 21 2 1 23 23 C 1.38214 * 120.07113 * 179.72790 * 22 21 2 24 24 C 1.38412 * 119.99917 * 0.54402 * 23 22 21 25 25 F 1.35096 * 120.03842 * 179.75012 * 24 23 22 26 26 C 1.38653 * 119.92669 * 359.72699 * 24 23 22 27 27 F 1.35095 * 120.03379 * 180.02562 * 26 24 23 28 28 C 1.38209 * 119.96740 * 119.99861 * 21 2 1 29 29 H 1.09004 * 109.46992 * 300.00102 * 1 2 3 30 30 H 1.09005 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47467 * 59.99914 * 1 2 3 32 32 H 0.96993 * 120.00144 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.45597 * 35.02780 * 7 6 4 34 34 H 1.09001 * 109.49728 * 298.56122 * 8 7 6 35 35 H 1.09000 * 109.49880 * 58.66406 * 8 7 6 36 36 H 1.09002 * 109.58157 * 294.84659 * 9 8 7 37 37 H 1.08995 * 109.70516 * 174.49157 * 9 8 7 38 38 H 0.97000 * 119.99540 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.58805 * 293.82130 * 19 10 9 40 40 H 1.09005 * 109.70592 * 173.46645 * 19 10 9 41 41 H 1.08997 * 109.49641 * 301.33377 * 20 7 6 42 42 H 1.08999 * 109.49954 * 61.43625 * 20 7 6 43 43 H 1.08004 * 119.96566 * 359.97438 * 22 21 2 44 44 H 1.08001 * 120.00219 * 180.27564 * 23 22 21 45 45 H 1.07999 * 119.99829 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6507 8 6 1.2508 -2.0958 3.9931 9 6 1.7827 -2.8372 5.2237 10 7 1.9727 -1.8698 6.3130 11 6 1.3996 -2.0784 7.5391 12 1 0.4849 -2.6471 7.6179 13 6 1.9944 -1.5587 8.6807 14 7 3.2495 -1.1637 8.6472 15 14 1.0135 -1.4201 10.2644 16 1 0.5539 -2.7691 10.6817 17 1 1.8709 -0.8386 11.3283 18 1 -0.1638 -0.5427 10.0422 19 6 2.7896 -0.6747 6.0620 20 6 2.2463 0.0425 4.8222 21 6 2.0323 -0.7104 -1.2306 22 6 1.7025 -2.0356 -1.4458 23 6 2.1573 -2.6877 -2.5764 24 6 2.9531 -2.0171 -3.4890 25 9 3.4023 -2.6552 -4.5918 26 6 3.2885 -0.6897 -3.2702 27 9 4.0648 -0.0330 -4.1598 28 6 2.8268 -0.0380 -2.1399 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.1488 0.5384 2.5436 33 1 3.1940 -1.3330 3.4613 34 1 0.2570 -1.7022 4.2069 35 1 1.1964 -2.7837 3.1493 36 1 2.7358 -3.3081 4.9828 37 1 1.0665 -3.5987 5.5320 38 1 3.6651 -0.8008 9.4450 39 1 3.8248 -0.9692 5.8896 40 1 2.7381 -0.0070 6.9221 41 1 2.9006 0.8765 4.5684 42 1 1.2432 0.4159 5.0282 43 1 1.0855 -2.5608 -0.7317 44 1 1.8953 -3.7217 -2.7457 45 1 3.0877 0.9959 -1.9681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004180141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:43 Heat of formation + Delta-G solvation = -89.349764 kcal Electronic energy + Delta-G solvation = -29001.088875 eV Core-core repulsion = 24654.642988 eV Total energy + Delta-G solvation = -4346.445887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.69217 -48.76981 -40.52744 -38.94043 -37.33895 -34.52373 -34.27122 -32.10761 -31.20693 -30.23545 -29.65963 -29.00578 -25.50851 -24.67202 -23.57330 -22.79358 -22.26486 -21.51697 -20.06574 -19.31662 -18.22004 -17.70185 -17.36429 -16.81856 -16.57038 -16.38924 -15.94401 -15.31617 -15.18376 -14.83020 -14.74454 -14.65155 -14.26218 -14.08733 -13.69925 -13.59617 -13.38591 -13.17566 -13.02103 -12.82388 -12.57802 -12.45225 -12.16433 -11.92484 -11.77996 -11.51368 -11.36501 -11.15412 -10.90220 -10.74862 -10.53916 -10.33277 -10.08254 -9.92034 -9.74417 -9.55019 -9.30323 -8.88043 -8.78264 -8.49205 -6.72262 -5.83043 -3.25558 0.61466 0.73056 2.65040 2.95323 3.34353 3.37223 3.41700 3.42458 3.52474 4.00053 4.12453 4.27140 4.46316 4.60577 4.69954 4.75518 4.82579 4.90548 5.22391 5.30340 5.36784 5.40396 5.45944 5.46251 5.49982 5.54210 5.61030 5.71929 5.80075 5.82044 6.02189 6.07273 6.21336 6.27904 6.45097 6.48304 6.49335 6.54138 6.74866 6.84914 6.94623 7.27080 7.54021 7.64523 7.75997 8.28861 8.41081 9.17139 9.80233 10.37145 11.25894 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.002101 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.081970 B =13325.619308 C =13431.874467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.108 0.892 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.721 5.721 7 C 0.151 3.849 8 C -0.137 4.137 9 C 0.147 3.853 10 N -0.592 5.592 11 C -0.254 4.254 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.174 3.826 20 C -0.146 4.146 21 C -0.045 4.045 22 C -0.063 4.063 23 C -0.126 4.126 24 C 0.065 3.935 25 F -0.131 7.131 26 C 0.063 3.937 27 F -0.131 7.131 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 4.684 -22.210 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.126 0.874 4 C 0.298 3.702 5 O -0.409 6.409 6 N -0.371 5.371 7 C 0.047 3.953 8 C -0.178 4.178 9 C 0.020 3.980 10 N -0.315 5.315 11 C -0.383 4.383 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.548 5.548 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.048 3.952 20 C -0.186 4.186 21 C -0.046 4.046 22 C -0.081 4.081 23 C -0.144 4.144 24 C 0.045 3.955 25 F -0.110 7.110 26 C 0.043 3.957 27 F -0.109 7.109 28 C -0.137 4.137 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.842 4.019 -22.192 23.067 hybrid contribution -0.363 0.521 0.510 0.815 sum -5.205 4.540 -21.681 22.755 Atomic orbital electron populations 1.21817 0.91455 1.03456 1.03231 1.20345 0.98099 1.00464 0.90653 0.87395 1.20289 0.80569 0.84859 0.84458 1.90742 1.37530 1.26043 1.86571 1.46330 1.53162 1.31735 1.05831 1.21067 0.98280 0.93136 0.82772 1.22360 0.99017 0.97321 0.99080 1.20872 0.97679 0.91792 0.87646 1.44081 1.59368 1.19418 1.08642 1.19145 1.03236 1.32783 0.83157 0.91683 1.25063 0.95079 1.01913 0.97580 1.70017 1.09979 1.46160 1.28607 0.86359 0.79292 0.78036 0.83009 1.20858 1.21634 1.21043 1.20737 0.92038 0.88820 0.93647 1.22535 1.01611 0.97603 0.96890 1.19223 0.96718 0.94144 0.94526 1.20905 0.98258 0.93487 0.95461 1.21073 0.98209 1.01266 0.93887 1.17711 1.00956 0.90025 0.86789 1.91521 1.87558 1.81436 1.50460 1.17556 0.97403 0.89813 0.90892 1.91522 1.72360 1.80512 1.66545 1.20910 0.98719 1.01312 0.92770 0.91168 0.91529 0.91098 0.77057 0.90019 0.92331 0.92788 0.96237 0.92568 0.93516 0.96138 0.89026 0.92758 0.92160 0.84285 0.83602 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.90 37.15 0.33 -0.54 16 2 C -0.07 -0.61 2.90 -92.92 -0.27 -0.88 16 3 H 0.11 0.66 7.87 -51.93 -0.41 0.25 16 4 C 0.51 6.30 6.98 -10.99 -0.08 6.22 16 5 O -0.53 -8.70 14.75 5.55 0.08 -8.62 16 6 N -0.72 -8.71 4.97 -53.76 -0.27 -8.98 16 7 C 0.15 2.42 2.42 -67.89 -0.16 2.26 16 8 C -0.14 -2.35 5.65 -26.61 -0.15 -2.50 16 9 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 10 N -0.59 -14.39 2.99 -172.32 -0.52 -14.91 16 11 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 12 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 13 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 15 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.17 3.96 5.30 -3.72 -0.02 3.94 16 20 C -0.15 -2.52 5.55 -26.61 -0.15 -2.67 16 21 C -0.05 -0.43 4.40 -104.62 -0.46 -0.89 16 22 C -0.06 -0.61 7.92 -39.58 -0.31 -0.92 16 23 C -0.13 -1.18 10.02 -39.53 -0.40 -1.58 16 24 C 0.07 0.71 7.31 -39.36 -0.29 0.42 16 25 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 26 C 0.06 0.68 7.31 -39.37 -0.29 0.40 16 27 F -0.13 -1.51 17.18 2.25 0.04 -1.48 16 28 C -0.12 -1.09 9.65 -39.53 -0.38 -1.47 16 29 H 0.07 0.37 7.56 -51.93 -0.39 -0.02 16 30 H 0.07 0.45 7.40 -51.93 -0.38 0.06 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.40 3.66 8.02 -40.82 -0.33 3.34 16 33 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 2.33 6.07 -51.93 -0.31 2.01 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.14 1.27 7.51 -52.48 -0.39 0.88 16 44 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.15 1.00 7.94 -52.49 -0.42 0.58 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -31.38 373.64 -8.65 -40.04 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.38 Total: 0.84 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.88 Total: -2.12 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.16 Total: -48.94 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.38 -8.65 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004180141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.311 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds