Wall clock time and date at job start Tue Mar 31 2020 21:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47364 * 120.00143 * 2 1 3 5 5 O 1.21288 * 119.99950 * 119.99657 * 4 2 1 6 6 N 1.34773 * 120.00083 * 299.99940 * 4 2 1 7 7 C 1.46507 * 120.00079 * 179.97438 * 6 4 2 8 8 C 1.53034 * 109.45933 * 275.07016 * 7 6 4 9 9 C 1.53197 * 109.31218 * 178.61600 * 8 7 6 10 10 N 1.46926 * 108.77371 * 54.63105 * 9 8 7 11 11 C 1.36940 * 120.62506 * 126.41951 * 10 9 8 12 12 H 1.08000 * 119.99839 * 331.81538 * 11 10 9 13 13 C 1.38810 * 119.99907 * 151.82707 * 11 10 9 14 14 N 1.31626 * 119.99853 * 343.06944 * 13 11 10 15 15 Si 1.86799 * 120.00180 * 163.07676 * 13 11 10 16 16 H 1.48504 * 109.47364 * 59.99643 * 15 13 11 17 17 H 1.48496 * 109.47120 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46771 * 299.99405 * 15 13 11 19 19 C 1.46917 * 118.74059 * 306.39410 * 10 9 8 20 20 C 1.53042 * 109.45735 * 155.00151 * 7 6 4 21 21 C 1.50707 * 109.47088 * 240.00353 * 2 1 3 22 22 C 1.38253 * 119.96217 * 299.72659 * 21 2 1 23 23 C 1.38214 * 120.07113 * 179.72790 * 22 21 2 24 24 C 1.38412 * 119.99917 * 0.54402 * 23 22 21 25 25 F 1.35096 * 120.03842 * 179.75012 * 24 23 22 26 26 C 1.38653 * 119.92669 * 359.72699 * 24 23 22 27 27 F 1.35095 * 120.03379 * 180.02562 * 26 24 23 28 28 C 1.38209 * 119.96740 * 119.99861 * 21 2 1 29 29 H 1.09004 * 109.46992 * 300.00102 * 1 2 3 30 30 H 1.09005 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47467 * 59.99914 * 1 2 3 32 32 H 0.96993 * 120.00144 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.45597 * 35.02780 * 7 6 4 34 34 H 1.09001 * 109.49728 * 298.56122 * 8 7 6 35 35 H 1.09000 * 109.49880 * 58.66406 * 8 7 6 36 36 H 1.09002 * 109.58157 * 294.84659 * 9 8 7 37 37 H 1.08995 * 109.70516 * 174.49157 * 9 8 7 38 38 H 0.97000 * 119.99540 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.58805 * 293.82130 * 19 10 9 40 40 H 1.09005 * 109.70592 * 173.46645 * 19 10 9 41 41 H 1.08997 * 109.49641 * 301.33377 * 20 7 6 42 42 H 1.08999 * 109.49954 * 61.43625 * 20 7 6 43 43 H 1.08004 * 119.96566 * 359.97438 * 22 21 2 44 44 H 1.08001 * 120.00219 * 180.27564 * 23 22 21 45 45 H 1.07999 * 119.99829 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6507 8 6 1.2508 -2.0958 3.9931 9 6 1.7827 -2.8372 5.2237 10 7 1.9727 -1.8698 6.3130 11 6 1.3996 -2.0784 7.5391 12 1 0.4849 -2.6471 7.6179 13 6 1.9944 -1.5587 8.6807 14 7 3.2495 -1.1637 8.6472 15 14 1.0135 -1.4201 10.2644 16 1 0.5539 -2.7691 10.6817 17 1 1.8709 -0.8386 11.3283 18 1 -0.1638 -0.5427 10.0422 19 6 2.7896 -0.6747 6.0620 20 6 2.2463 0.0425 4.8222 21 6 2.0323 -0.7104 -1.2306 22 6 1.7025 -2.0356 -1.4458 23 6 2.1573 -2.6877 -2.5764 24 6 2.9531 -2.0171 -3.4890 25 9 3.4023 -2.6552 -4.5918 26 6 3.2885 -0.6897 -3.2702 27 9 4.0648 -0.0330 -4.1598 28 6 2.8268 -0.0380 -2.1399 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.1488 0.5384 2.5436 33 1 3.1940 -1.3330 3.4613 34 1 0.2570 -1.7022 4.2069 35 1 1.1964 -2.7837 3.1493 36 1 2.7358 -3.3081 4.9828 37 1 1.0665 -3.5987 5.5320 38 1 3.6651 -0.8008 9.4450 39 1 3.8248 -0.9692 5.8896 40 1 2.7381 -0.0070 6.9221 41 1 2.9006 0.8765 4.5684 42 1 1.2432 0.4159 5.0282 43 1 1.0855 -2.5608 -0.7317 44 1 1.8953 -3.7217 -2.7457 45 1 3.0877 0.9959 -1.9681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004180141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:41 Heat of formation + Delta-G solvation = -107.142185 kcal Electronic energy + Delta-G solvation = -29001.860412 eV Core-core repulsion = 24654.642988 eV Total energy + Delta-G solvation = -4347.217424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.52822 -49.61353 -41.44402 -39.92176 -38.77274 -35.95940 -35.09574 -33.78241 -31.94672 -31.76440 -31.18265 -29.90009 -27.02961 -25.65262 -24.30115 -24.11408 -23.80427 -22.73158 -21.19073 -20.72460 -19.06561 -18.88559 -18.37026 -18.07341 -17.44171 -17.31640 -17.08878 -16.72258 -16.16498 -16.04056 -15.65309 -15.60171 -15.49308 -15.34175 -15.00854 -14.88648 -14.64200 -14.37177 -14.09512 -13.98336 -13.77546 -13.31019 -13.20530 -13.00644 -12.91357 -12.59180 -12.55464 -12.53535 -12.43959 -12.19776 -12.04360 -11.97619 -11.85150 -11.52897 -11.31533 -10.71227 -10.54128 -10.06388 -9.94114 -9.66207 -8.69691 -7.87187 -5.32968 -0.15349 0.01029 1.49789 1.51026 1.58398 1.70858 2.09608 2.49315 2.52792 2.76988 3.25360 3.28926 3.39811 3.55981 3.67441 3.82753 3.94566 4.04650 4.09260 4.11512 4.22737 4.29000 4.36839 4.48921 4.67666 4.69225 4.78045 4.83320 4.84061 4.88559 4.92880 4.97386 5.04542 5.07848 5.08874 5.18412 5.31079 5.33305 5.40240 5.49250 5.60695 5.65566 5.71727 5.73290 6.39636 6.67347 7.15363 7.35352 7.85294 8.37714 9.19638 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.002101 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.081970 B =13325.619308 C =13431.874467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 H 0.139 0.861 4 C 0.513 3.487 5 O -0.576 6.576 6 N -0.708 5.708 7 C 0.163 3.837 8 C -0.121 4.121 9 C 0.143 3.857 10 N -0.609 5.609 11 C -0.263 4.263 12 H 0.068 0.932 13 C -0.050 4.050 14 N -0.937 5.937 15 Si 0.969 3.031 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.274 1.274 19 C 0.177 3.823 20 C -0.128 4.128 21 C -0.050 4.050 22 C -0.069 4.069 23 C -0.126 4.126 24 C 0.047 3.953 25 F -0.141 7.141 26 C 0.047 3.953 27 F -0.140 7.140 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.415 0.585 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.003 0.997 37 H 0.056 0.944 38 H 0.250 0.750 39 H -0.009 1.009 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.143 0.857 44 H 0.162 0.838 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 6.188 -23.045 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 H 0.157 0.843 4 C 0.300 3.700 5 O -0.455 6.455 6 N -0.359 5.359 7 C 0.058 3.942 8 C -0.161 4.161 9 C 0.017 3.983 10 N -0.333 5.333 11 C -0.393 4.393 12 H 0.086 0.914 13 C -0.246 4.246 14 N -0.582 5.582 15 Si 0.797 3.203 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.200 1.200 19 C 0.051 3.949 20 C -0.168 4.168 21 C -0.051 4.051 22 C -0.087 4.087 23 C -0.144 4.144 24 C 0.027 3.973 25 F -0.120 7.120 26 C 0.027 3.973 27 F -0.118 7.118 28 C -0.131 4.131 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.021 0.979 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.009 0.991 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.161 0.839 44 H 0.180 0.820 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.004 5.546 -23.065 24.734 hybrid contribution 0.334 -0.027 0.748 0.820 sum -6.669 5.520 -22.316 23.937 Atomic orbital electron populations 1.21864 0.89481 1.03584 1.04877 1.20364 0.99495 1.01022 0.87447 0.84341 1.20997 0.79462 0.84265 0.85262 1.90739 1.39452 1.28157 1.87177 1.46009 1.53252 1.32059 1.04586 1.20599 0.96894 0.92733 0.83976 1.22141 0.99301 0.97456 0.97213 1.20980 0.97103 0.91834 0.88395 1.44345 1.59346 1.20705 1.08856 1.19487 1.03283 1.32257 0.84318 0.91448 1.25824 0.95900 1.02198 1.00644 1.70184 1.11516 1.47445 1.29101 0.85327 0.77922 0.78066 0.79030 1.20370 1.22208 1.19983 1.20564 0.90857 0.88342 0.95132 1.22242 1.02283 0.97672 0.94581 1.19434 0.96527 0.94155 0.94982 1.21075 0.98286 0.93958 0.95415 1.21260 0.97625 1.02046 0.93494 1.17970 1.01859 0.90454 0.87027 1.91488 1.87816 1.81666 1.51039 1.17814 0.97972 0.89991 0.91541 1.91495 1.72716 1.80648 1.66981 1.21153 0.97769 1.02390 0.91800 0.89753 0.92231 0.89269 0.74820 0.92744 0.91274 0.91936 0.97863 0.92523 0.94050 0.99095 0.91992 0.90542 0.90943 0.83936 0.82017 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.90 71.98 0.64 -0.50 16 2 C -0.06 -0.78 2.90 -12.29 -0.04 -0.82 16 3 H 0.14 0.97 7.87 -2.38 -0.02 0.96 16 4 C 0.51 11.17 6.98 87.66 0.61 11.78 16 5 O -0.58 -18.03 14.75 -3.06 -0.05 -18.07 16 6 N -0.71 -14.87 4.97 -442.40 -2.20 -17.07 16 7 C 0.16 4.99 2.42 45.02 0.11 5.09 16 8 C -0.12 -3.95 5.65 30.67 0.17 -3.77 16 9 C 0.14 5.97 6.52 86.36 0.56 6.53 16 10 N -0.61 -29.92 2.99 -699.11 -2.09 -32.01 16 11 C -0.26 -14.16 9.58 84.03 0.81 -13.35 16 12 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 13 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 14 N -0.94 -54.62 11.19 21.65 0.24 -54.38 16 15 Si 0.97 43.72 29.59 68.60 2.03 45.74 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.18 8.21 5.30 86.36 0.46 8.67 16 20 C -0.13 -4.22 5.55 30.67 0.17 -4.05 16 21 C -0.05 -0.81 4.40 -19.87 -0.09 -0.90 16 22 C -0.07 -1.22 7.92 22.27 0.18 -1.04 16 23 C -0.13 -2.25 10.02 22.31 0.22 -2.03 16 24 C 0.05 1.00 7.31 22.41 0.16 1.16 16 25 F -0.14 -3.33 17.18 44.97 0.77 -2.55 16 26 C 0.05 0.96 7.31 22.41 0.16 1.13 16 27 F -0.14 -3.16 17.18 44.97 0.77 -2.39 16 28 C -0.11 -1.80 9.65 22.30 0.22 -1.59 16 29 H 0.08 0.48 7.56 -2.38 -0.02 0.46 16 30 H 0.06 0.59 7.40 -2.38 -0.02 0.58 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.41 5.83 8.02 -92.71 -0.74 5.09 16 33 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.06 2.30 7.93 -2.39 -0.02 2.29 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.14 2.38 7.51 -2.91 -0.02 2.36 16 44 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.17 1.76 7.94 -2.91 -0.02 1.73 16 Total: -1.00 -70.40 373.64 4.52 -65.87 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.27 Total: 10.88 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 4.77 Total: 3.97 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.05 Total: -103.45 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 1.55 Total: -4.94 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.40 4.52 -65.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004180141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.269 kcal (2) G-P(sol) polarization free energy of solvation -70.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds