Wall clock time and date at job start Tue Mar 31 2020 21:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50703 * 109.46898 * 240.00506 * 2 1 3 5 5 O 1.21281 * 119.99718 * 239.99754 * 4 2 1 6 6 N 1.34771 * 120.00398 * 60.00120 * 4 2 1 7 7 C 1.46507 * 120.00309 * 180.02562 * 6 4 2 8 8 C 1.53036 * 109.45897 * 204.99931 * 7 6 4 9 9 C 1.53191 * 109.31166 * 178.61271 * 8 7 6 10 10 N 1.46926 * 108.89452 * 54.56289 * 9 8 7 11 11 C 1.36934 * 120.63630 * 126.46229 * 10 9 8 12 12 H 1.08000 * 119.99464 * 331.92669 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92945 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17004 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.17171 * 13 11 10 16 16 H 1.48503 * 109.47611 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47271 * 120.00121 * 15 13 11 18 18 H 1.48496 * 109.47355 * 239.99904 * 15 13 11 19 19 C 1.46973 * 118.71425 * 306.64410 * 10 9 8 20 20 C 1.53043 * 109.45897 * 84.92611 * 7 6 4 21 21 C 1.50695 * 109.47528 * 120.00323 * 2 1 3 22 22 C 1.38258 * 119.96622 * 240.00184 * 21 2 1 23 23 C 1.38216 * 120.06993 * 179.97438 * 22 21 2 24 24 C 1.38414 * 119.99854 * 359.97438 * 23 22 21 25 25 F 1.35098 * 120.03255 * 180.02562 * 24 23 22 26 26 C 1.38644 * 119.93357 * 359.97438 * 24 23 22 27 27 F 1.35096 * 120.03868 * 179.97438 * 26 24 23 28 28 C 1.38223 * 119.96334 * 59.72155 * 21 2 1 29 29 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47241 * 299.99677 * 1 2 3 31 31 H 1.08998 * 109.47299 * 59.99704 * 1 2 3 32 32 H 0.96999 * 119.99854 * 359.97438 * 6 4 2 33 33 H 1.08996 * 109.45453 * 324.96922 * 7 6 4 34 34 H 1.09001 * 109.50071 * 58.66060 * 8 7 6 35 35 H 1.09005 * 109.49477 * 298.56396 * 8 7 6 36 36 H 1.09000 * 109.58954 * 174.41929 * 9 8 7 37 37 H 1.08996 * 109.58649 * 294.70243 * 9 8 7 38 38 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.46458 * 293.56938 * 19 10 9 40 40 H 1.08992 * 109.71060 * 173.28601 * 19 10 9 41 41 H 1.08995 * 109.49931 * 301.34255 * 20 7 6 42 42 H 1.08997 * 109.49588 * 61.40711 * 20 7 6 43 43 H 1.07995 * 119.96149 * 359.97344 * 22 21 2 44 44 H 1.07994 * 119.99686 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.99413 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6509 8 6 2.2462 0.0428 -4.8222 9 6 2.7893 -0.6742 -6.0622 10 7 1.9751 -1.8709 -6.3147 11 6 1.4039 -2.0801 -7.5415 12 1 1.1465 -1.2388 -8.1678 13 6 1.1557 -3.3735 -7.9801 14 7 1.7507 -4.3920 -7.3961 15 14 -0.0226 -3.6686 -9.3991 16 1 -0.5563 -2.3681 -9.8781 17 1 0.6967 -4.3472 -10.5070 18 1 -1.1456 -4.5250 -8.9402 19 6 1.7824 -2.8368 -5.2239 20 6 1.2505 -2.0956 -3.9933 21 6 2.0324 -0.7104 1.2303 22 6 2.8272 -0.0379 2.1400 23 6 3.2888 -0.6872 3.2694 24 6 2.9549 -2.0121 3.4910 25 9 3.4053 -2.6473 4.5950 26 6 2.1570 -2.6863 2.5794 27 9 1.8303 -3.9795 2.7934 28 6 1.6933 -2.0321 1.4512 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.1488 0.5386 -2.5436 33 1 3.1938 -1.3327 -3.4616 34 1 2.9004 0.8769 -4.5685 35 1 1.2430 0.4163 -5.0281 36 1 2.7355 -0.0074 -6.9228 37 1 3.8253 -0.9665 -5.8908 38 1 1.5776 -5.2958 -7.7028 39 1 2.7355 -3.3078 -4.9832 40 1 1.0654 -3.5985 -5.5298 41 1 1.1961 -2.7834 -3.1496 42 1 0.2567 -1.7020 -4.2065 43 1 3.0877 0.9960 1.9678 44 1 3.9099 -0.1609 3.9790 45 1 1.0683 -2.5548 0.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004180145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:47 Heat of formation + Delta-G solvation = -88.862392 kcal Electronic energy + Delta-G solvation = -29179.692654 eV Core-core repulsion = 24833.267902 eV Total energy + Delta-G solvation = -4346.424753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.62723 -48.70019 -40.49631 -38.92515 -37.32859 -34.50533 -34.26696 -32.11157 -31.07178 -30.15090 -29.74337 -29.04263 -25.50125 -24.70402 -23.49392 -22.69227 -22.27427 -21.51732 -20.06213 -19.30644 -18.16568 -17.66771 -17.33499 -16.87862 -16.55196 -16.36054 -15.93043 -15.11369 -15.08813 -14.90138 -14.72530 -14.49260 -14.26095 -14.02690 -13.72851 -13.62550 -13.53024 -13.03933 -12.91006 -12.83126 -12.53986 -12.46614 -12.22458 -11.93762 -11.61089 -11.53142 -11.41926 -11.15877 -10.95534 -10.76231 -10.42683 -10.24885 -10.10028 -9.84172 -9.78930 -9.49203 -9.27844 -8.87444 -8.75965 -8.45472 -6.70669 -5.80532 -3.23894 0.62777 0.77217 2.68150 2.96979 3.35176 3.40034 3.43547 3.45502 3.55431 4.05704 4.15565 4.25448 4.47460 4.61571 4.69032 4.77490 4.86508 4.95554 5.22422 5.30359 5.37473 5.41429 5.42115 5.48818 5.59070 5.59285 5.62815 5.71598 5.76751 5.78601 6.03915 6.07645 6.19964 6.30298 6.38758 6.48600 6.56531 6.61653 6.73406 6.86665 6.90590 7.34557 7.62005 7.67331 7.77896 8.32090 8.42925 9.18806 9.82054 10.38720 11.28088 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002381 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.807858 B =11758.760441 C =12454.257246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.109 0.891 4 C 0.512 3.488 5 O -0.530 6.530 6 N -0.721 5.721 7 C 0.150 3.850 8 C -0.138 4.138 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.254 4.254 12 H 0.066 0.934 13 C 0.003 3.997 14 N -0.900 5.900 15 Si 0.902 3.098 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.174 3.826 20 C -0.145 4.145 21 C -0.046 4.046 22 C -0.093 4.093 23 C -0.128 4.128 24 C 0.064 3.936 25 F -0.131 7.131 26 C 0.069 3.931 27 F -0.128 7.128 28 C -0.090 4.090 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.395 0.605 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.254 0.746 39 H 0.020 0.980 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 13.213 20.625 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 H 0.127 0.873 4 C 0.297 3.703 5 O -0.406 6.406 6 N -0.372 5.372 7 C 0.047 3.953 8 C -0.178 4.178 9 C 0.021 3.979 10 N -0.315 5.315 11 C -0.384 4.384 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.545 5.545 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.047 3.953 20 C -0.186 4.186 21 C -0.046 4.046 22 C -0.112 4.112 23 C -0.147 4.147 24 C 0.044 3.956 25 F -0.110 7.110 26 C 0.048 3.952 27 F -0.107 7.107 28 C -0.109 4.109 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.228 0.772 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.820 12.230 20.675 24.035 hybrid contribution -0.776 -0.286 -0.509 0.971 sum -1.596 11.945 20.165 23.492 Atomic orbital electron populations 1.21829 0.91552 1.03518 1.03188 1.20347 0.98068 1.00364 0.90657 0.87259 1.20309 0.80667 0.84897 0.84469 1.90761 1.37465 1.25846 1.86525 1.46305 1.53231 1.31748 1.05871 1.21063 0.98730 0.93051 0.82432 1.22330 1.01577 0.97411 0.96505 1.20832 0.93314 0.89790 0.93969 1.44102 1.56548 1.21636 1.09246 1.19200 1.33462 0.91515 0.94230 0.91615 1.25072 0.99919 0.96340 0.98300 1.70044 1.42561 0.98425 1.43424 0.86236 0.80818 0.77848 0.81927 1.20264 1.21697 1.21563 1.20751 0.99075 0.91440 0.84013 1.22547 0.98694 0.97116 1.00208 1.19227 0.97105 0.93201 0.95104 1.20936 0.96655 1.00547 0.93027 1.20988 1.01947 0.92134 0.99615 1.17706 1.00219 0.92173 0.85548 1.91520 1.87401 1.81943 1.50127 1.17635 1.00979 0.79946 0.96594 1.91537 1.90969 1.33478 1.94712 1.20898 1.00248 0.94665 0.95050 0.91573 0.91074 0.91172 0.77174 0.90027 0.92637 0.91854 0.92350 0.96236 0.93604 0.96179 0.89300 0.92919 0.92684 0.84234 0.83675 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.90 37.16 0.33 -0.63 16 2 C -0.07 -0.61 2.90 -92.93 -0.27 -0.88 16 3 H 0.11 0.61 7.87 -51.93 -0.41 0.20 16 4 C 0.51 6.54 6.99 -10.99 -0.08 6.46 16 5 O -0.53 -9.20 14.79 5.56 0.08 -9.12 16 6 N -0.72 -8.84 4.97 -53.76 -0.27 -9.11 16 7 C 0.15 2.45 2.42 -67.89 -0.16 2.29 16 8 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 9 C 0.15 2.96 6.51 -3.71 -0.02 2.94 16 10 N -0.59 -14.52 3.00 -172.29 -0.52 -15.03 16 11 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 12 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 15 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.17 4.15 5.30 -3.69 -0.02 4.13 16 20 C -0.15 -2.78 5.65 -26.61 -0.15 -2.93 16 21 C -0.05 -0.44 4.39 -104.62 -0.46 -0.90 16 22 C -0.09 -0.73 9.67 -39.58 -0.38 -1.11 16 23 C -0.13 -1.08 10.02 -39.52 -0.40 -1.47 16 24 C 0.06 0.71 7.31 -39.37 -0.29 0.42 16 25 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 26 C 0.07 0.85 7.31 -39.37 -0.29 0.56 16 27 F -0.13 -1.77 17.18 2.25 0.04 -1.73 16 28 C -0.09 -1.04 7.91 -39.52 -0.31 -1.35 16 29 H 0.07 0.52 7.37 -51.93 -0.38 0.14 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.40 7.56 -51.93 -0.39 0.00 16 32 H 0.39 3.59 8.02 -40.82 -0.33 3.26 16 33 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.14 0.67 7.94 -52.49 -0.42 0.25 16 44 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.14 1.72 7.51 -52.49 -0.39 1.33 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -32.52 373.67 -8.65 -41.17 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.37 Total: 0.63 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.88 Total: -1.79 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.16 Total: -49.68 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.52 -8.65 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004180145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.691 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds