Wall clock time and date at job start Tue Mar 31 2020 21:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50703 * 109.46898 * 240.00506 * 2 1 3 5 5 O 1.21281 * 119.99718 * 239.99754 * 4 2 1 6 6 N 1.34771 * 120.00398 * 60.00120 * 4 2 1 7 7 C 1.46507 * 120.00309 * 180.02562 * 6 4 2 8 8 C 1.53036 * 109.45897 * 204.99931 * 7 6 4 9 9 C 1.53191 * 109.31166 * 178.61271 * 8 7 6 10 10 N 1.46926 * 108.89452 * 54.56289 * 9 8 7 11 11 C 1.36934 * 120.63630 * 126.46229 * 10 9 8 12 12 H 1.08000 * 119.99464 * 331.92669 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92945 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17004 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.17171 * 13 11 10 16 16 H 1.48503 * 109.47611 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47271 * 120.00121 * 15 13 11 18 18 H 1.48496 * 109.47355 * 239.99904 * 15 13 11 19 19 C 1.46973 * 118.71425 * 306.64410 * 10 9 8 20 20 C 1.53043 * 109.45897 * 84.92611 * 7 6 4 21 21 C 1.50695 * 109.47528 * 120.00323 * 2 1 3 22 22 C 1.38258 * 119.96622 * 240.00184 * 21 2 1 23 23 C 1.38216 * 120.06993 * 179.97438 * 22 21 2 24 24 C 1.38414 * 119.99854 * 359.97438 * 23 22 21 25 25 F 1.35098 * 120.03255 * 180.02562 * 24 23 22 26 26 C 1.38644 * 119.93357 * 359.97438 * 24 23 22 27 27 F 1.35096 * 120.03868 * 179.97438 * 26 24 23 28 28 C 1.38223 * 119.96334 * 59.72155 * 21 2 1 29 29 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47241 * 299.99677 * 1 2 3 31 31 H 1.08998 * 109.47299 * 59.99704 * 1 2 3 32 32 H 0.96999 * 119.99854 * 359.97438 * 6 4 2 33 33 H 1.08996 * 109.45453 * 324.96922 * 7 6 4 34 34 H 1.09001 * 109.50071 * 58.66060 * 8 7 6 35 35 H 1.09005 * 109.49477 * 298.56396 * 8 7 6 36 36 H 1.09000 * 109.58954 * 174.41929 * 9 8 7 37 37 H 1.08996 * 109.58649 * 294.70243 * 9 8 7 38 38 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.46458 * 293.56938 * 19 10 9 40 40 H 1.08992 * 109.71060 * 173.28601 * 19 10 9 41 41 H 1.08995 * 109.49931 * 301.34255 * 20 7 6 42 42 H 1.08997 * 109.49588 * 61.40711 * 20 7 6 43 43 H 1.07995 * 119.96149 * 359.97344 * 22 21 2 44 44 H 1.07994 * 119.99686 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.99413 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6509 8 6 2.2462 0.0428 -4.8222 9 6 2.7893 -0.6742 -6.0622 10 7 1.9751 -1.8709 -6.3147 11 6 1.4039 -2.0801 -7.5415 12 1 1.1465 -1.2388 -8.1678 13 6 1.1557 -3.3735 -7.9801 14 7 1.7507 -4.3920 -7.3961 15 14 -0.0226 -3.6686 -9.3991 16 1 -0.5563 -2.3681 -9.8781 17 1 0.6967 -4.3472 -10.5070 18 1 -1.1456 -4.5250 -8.9402 19 6 1.7824 -2.8368 -5.2239 20 6 1.2505 -2.0956 -3.9933 21 6 2.0324 -0.7104 1.2303 22 6 2.8272 -0.0379 2.1400 23 6 3.2888 -0.6872 3.2694 24 6 2.9549 -2.0121 3.4910 25 9 3.4053 -2.6473 4.5950 26 6 2.1570 -2.6863 2.5794 27 9 1.8303 -3.9795 2.7934 28 6 1.6933 -2.0321 1.4512 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.1488 0.5386 -2.5436 33 1 3.1938 -1.3327 -3.4616 34 1 2.9004 0.8769 -4.5685 35 1 1.2430 0.4163 -5.0281 36 1 2.7355 -0.0074 -6.9228 37 1 3.8253 -0.9665 -5.8908 38 1 1.5776 -5.2958 -7.7028 39 1 2.7355 -3.3078 -4.9832 40 1 1.0654 -3.5985 -5.5298 41 1 1.1961 -2.7834 -3.1496 42 1 0.2567 -1.7020 -4.2065 43 1 3.0877 0.9960 1.9678 44 1 3.9099 -0.1609 3.9790 45 1 1.0683 -2.5548 0.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004180145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:45 Heat of formation + Delta-G solvation = -108.660636 kcal Electronic energy + Delta-G solvation = -29180.551171 eV Core-core repulsion = 24833.267902 eV Total energy + Delta-G solvation = -4347.283269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.54052 -49.62807 -41.44682 -39.92245 -38.78964 -35.98796 -35.11308 -33.79517 -31.86708 -31.73410 -31.24742 -29.97017 -27.04930 -25.72147 -24.36370 -23.93262 -23.85903 -22.73893 -21.24640 -20.71675 -19.06750 -18.83471 -18.44696 -18.09859 -17.53118 -17.32226 -17.17730 -16.70270 -16.06321 -16.03677 -15.73572 -15.58895 -15.35836 -15.34032 -15.04075 -14.86127 -14.64858 -14.53872 -14.14680 -14.07784 -13.58021 -13.37605 -13.18292 -13.04790 -12.97579 -12.66209 -12.65900 -12.56769 -12.25239 -12.13212 -12.10517 -12.01341 -11.83975 -11.52398 -11.35884 -10.70730 -10.59934 -10.04551 -9.95256 -9.67428 -8.71683 -7.88166 -5.34651 -0.15244 0.02707 1.46306 1.48081 1.58792 1.69891 2.10779 2.50246 2.50992 2.77825 3.26471 3.28106 3.40291 3.58357 3.65452 3.82071 3.93990 4.01505 4.08890 4.10106 4.22596 4.35394 4.37202 4.48381 4.67127 4.68464 4.80627 4.81398 4.85075 4.89725 4.90928 4.97694 5.04433 5.07730 5.09923 5.14718 5.27944 5.33061 5.39353 5.46725 5.59963 5.64225 5.69530 5.73952 6.37923 6.67059 7.12696 7.36798 7.84017 8.36560 9.18989 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002381 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.807858 B =11758.760441 C =12454.257246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 H 0.156 0.844 4 C 0.508 3.492 5 O -0.582 6.582 6 N -0.706 5.706 7 C 0.162 3.838 8 C -0.120 4.120 9 C 0.139 3.861 10 N -0.610 5.610 11 C -0.258 4.258 12 H 0.075 0.925 13 C -0.057 4.057 14 N -0.940 5.940 15 Si 0.969 3.031 16 H -0.260 1.260 17 H -0.295 1.295 18 H -0.293 1.293 19 C 0.182 3.818 20 C -0.129 4.129 21 C -0.053 4.053 22 C -0.077 4.077 23 C -0.118 4.118 24 C 0.046 3.954 25 F -0.142 7.142 26 C 0.035 3.965 27 F -0.149 7.149 28 C -0.105 4.105 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.417 0.583 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.009 0.991 38 H 0.248 0.752 39 H -0.016 1.016 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.186 0.814 44 H 0.178 0.822 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 18.056 21.374 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 H 0.173 0.827 4 C 0.295 3.705 5 O -0.462 6.462 6 N -0.358 5.358 7 C 0.057 3.943 8 C -0.159 4.159 9 C 0.013 3.987 10 N -0.333 5.333 11 C -0.388 4.388 12 H 0.093 0.907 13 C -0.251 4.251 14 N -0.586 5.586 15 Si 0.797 3.203 16 H -0.184 1.184 17 H -0.222 1.222 18 H -0.220 1.220 19 C 0.056 3.944 20 C -0.169 4.169 21 C -0.053 4.053 22 C -0.095 4.095 23 C -0.136 4.136 24 C 0.026 3.974 25 F -0.120 7.120 26 C 0.015 3.985 27 F -0.127 7.127 28 C -0.124 4.124 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.002 0.998 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.203 0.797 44 H 0.195 0.805 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.469 17.152 21.438 27.494 hybrid contribution -0.510 -1.767 -0.731 1.979 sum -1.979 15.385 20.707 25.873 Atomic orbital electron populations 1.21879 0.90156 1.02817 1.05197 1.20411 0.99000 1.01503 0.87106 0.82695 1.21177 0.79475 0.84212 0.85601 1.90761 1.39845 1.28283 1.87263 1.45972 1.53292 1.32008 1.04496 1.20605 0.96467 0.92592 0.84604 1.22119 1.02971 0.97351 0.93492 1.21062 0.92398 0.88508 0.96682 1.44358 1.57465 1.22792 1.08712 1.19606 1.32612 0.91721 0.94893 0.90725 1.25891 1.01786 0.96284 1.01185 1.70222 1.44469 0.98522 1.45397 0.85187 0.78382 0.78073 0.78688 1.18405 1.22190 1.22007 1.20449 0.96432 0.91462 0.86071 1.22276 0.99541 0.97789 0.97293 1.19525 0.97273 0.92398 0.96143 1.21440 0.94322 1.02225 0.91474 1.21422 1.01206 0.90690 1.00296 1.18038 1.00704 0.93402 0.85252 1.91487 1.87559 1.82422 1.50576 1.17995 1.02857 0.79616 0.98010 1.91470 1.91401 1.34911 1.94955 1.20913 1.00840 0.96000 0.94638 0.93738 0.88738 0.89487 0.74580 0.92811 0.88747 0.90414 0.91414 0.97336 0.94280 0.99753 0.92950 0.93953 0.91807 0.79691 0.80452 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.90 71.98 0.64 -0.76 16 2 C -0.06 -0.76 2.90 -12.29 -0.04 -0.79 16 3 H 0.16 0.66 7.87 -2.39 -0.02 0.64 16 4 C 0.51 11.90 6.99 87.66 0.61 12.51 16 5 O -0.58 -20.30 14.79 -3.03 -0.04 -20.34 16 6 N -0.71 -15.16 4.97 -442.40 -2.20 -17.36 16 7 C 0.16 5.08 2.42 45.02 0.11 5.19 16 8 C -0.12 -3.37 5.55 30.67 0.17 -3.20 16 9 C 0.14 5.42 6.51 86.36 0.56 5.98 16 10 N -0.61 -30.26 3.00 -699.01 -2.10 -32.35 16 11 C -0.26 -13.96 9.58 84.03 0.81 -13.15 16 12 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16 13 C -0.06 -3.17 4.92 84.86 0.42 -2.76 16 14 N -0.94 -57.07 11.20 21.65 0.24 -56.83 16 15 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 19 C 0.18 9.17 5.30 86.35 0.46 9.62 16 20 C -0.13 -4.99 5.65 30.67 0.17 -4.82 16 21 C -0.05 -0.88 4.39 -19.86 -0.09 -0.97 16 22 C -0.08 -0.86 9.67 22.27 0.22 -0.65 16 23 C -0.12 -1.62 10.02 22.31 0.22 -1.40 16 24 C 0.05 1.01 7.31 22.41 0.16 1.18 16 25 F -0.14 -3.44 17.18 44.97 0.77 -2.66 16 26 C 0.04 0.91 7.31 22.41 0.16 1.08 16 27 F -0.15 -4.49 17.18 44.97 0.77 -3.72 16 28 C -0.10 -2.48 7.91 22.31 0.18 -2.31 16 29 H 0.04 0.64 7.37 -2.39 -0.02 0.63 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.58 7.56 -2.39 -0.02 0.56 16 32 H 0.42 5.51 8.02 -92.71 -0.74 4.76 16 33 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.07 2.48 7.93 -2.39 -0.02 2.47 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 39 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.05 2.99 6.07 -2.39 -0.01 2.97 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.19 0.43 7.94 -2.91 -0.02 0.41 16 44 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 45 H 0.13 3.32 7.51 -2.91 -0.02 3.29 16 Total: -1.00 -77.96 373.67 4.52 -73.44 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.27 Total: 8.26 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 4.77 Total: 4.75 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -4.05 Total: -106.54 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.04 Total: -20.34 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 1.55 Total: -6.39 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -77.96 4.52 -73.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004180145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.218 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds