Wall clock time and date at job start Tue Mar 31 2020 21:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47047 * 2 1 4 4 C 1.50704 * 109.47069 * 240.00139 * 2 1 3 5 5 O 1.21284 * 120.00091 * 239.99800 * 4 2 1 6 6 N 1.34782 * 120.00044 * 60.00347 * 4 2 1 7 7 C 1.46498 * 119.99884 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.49694 * 324.92487 * 7 6 4 9 9 C 1.53037 * 109.52158 * 204.84999 * 7 6 4 10 10 C 1.53045 * 109.53716 * 178.66492 * 9 7 6 11 11 C 1.53181 * 109.31309 * 61.36308 * 10 9 7 12 12 N 1.46956 * 108.89257 * 305.44707 * 11 10 9 13 13 C 1.36940 * 120.65222 * 233.53767 * 12 11 10 14 14 H 1.08000 * 119.99751 * 151.72485 * 13 12 11 15 15 C 1.38810 * 120.00078 * 331.72398 * 13 12 11 16 16 N 1.31619 * 119.99689 * 343.17980 * 15 13 12 17 17 Si 1.86795 * 119.99988 * 163.18147 * 15 13 12 18 18 H 1.48499 * 109.47320 * 89.99982 * 17 15 13 19 19 H 1.48500 * 109.47299 * 209.99808 * 17 15 13 20 20 H 1.48507 * 109.47261 * 329.99989 * 17 15 13 21 21 C 1.46921 * 118.71898 * 53.34856 * 12 11 10 22 22 C 1.50692 * 109.47118 * 120.00062 * 2 1 3 23 23 C 1.38421 * 120.02850 * 59.73124 * 22 2 1 24 24 F 1.35102 * 120.00899 * 359.96774 * 23 22 2 25 25 C 1.38470 * 119.97756 * 179.70310 * 23 22 2 26 26 C 1.38209 * 120.02359 * 0.58718 * 25 23 22 27 27 C 1.38209 * 120.04966 * 359.68460 * 26 25 23 28 28 C 1.38425 * 120.02463 * 239.99660 * 22 2 1 29 29 F 1.35098 * 120.01351 * 359.97438 * 28 22 2 30 30 H 1.09008 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47212 * 300.00060 * 1 2 3 32 32 H 1.09009 * 109.47597 * 59.99885 * 1 2 3 33 33 H 0.96997 * 119.99877 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.46263 * 298.68593 * 9 7 6 35 35 H 1.09002 * 109.46114 * 58.64431 * 9 7 6 36 36 H 1.09006 * 109.49476 * 181.31974 * 10 9 7 37 37 H 1.09001 * 109.49694 * 301.41135 * 10 9 7 38 38 H 1.09007 * 109.58577 * 65.15556 * 11 10 9 39 39 H 1.09004 * 109.58758 * 185.57178 * 11 10 9 40 40 H 0.97000 * 119.99637 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.59204 * 186.78638 * 21 12 11 42 42 H 1.09006 * 109.58330 * 66.50677 * 21 12 11 43 43 H 1.08003 * 119.98916 * 180.27189 * 25 23 22 44 44 H 1.07998 * 119.97650 * 179.70645 * 26 25 23 45 45 H 1.07999 * 119.98608 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4547 7 6 2.1946 -0.9408 -3.6508 8 1 3.1942 -1.3324 -3.4624 9 6 2.2433 0.0406 -4.8241 10 6 2.7843 -0.6724 -6.0656 11 6 1.8458 -1.8245 -6.4375 12 7 1.6756 -2.6964 -5.2668 13 6 1.9133 -4.0419 -5.3579 14 1 2.2348 -4.5937 -4.4869 15 6 1.7411 -4.6967 -6.5697 16 7 1.0477 -4.1272 -7.5327 17 14 2.4932 -6.3860 -6.8337 18 1 1.5239 -7.4303 -6.4152 19 1 2.8211 -6.5628 -8.2712 20 1 3.7324 -6.5081 -6.0246 21 6 1.2494 -2.0960 -3.9954 22 6 2.0322 -0.7104 1.2304 23 6 1.6936 -2.0340 1.4528 24 9 0.9119 -2.6895 0.5671 25 6 2.1608 -2.6875 2.5806 26 6 2.9550 -2.0152 3.4903 27 6 3.2891 -0.6920 3.2721 28 6 2.8281 -0.0382 2.1419 29 9 3.1555 1.2551 1.9286 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.1488 0.5386 -2.5436 34 1 1.2394 0.4131 -5.0279 35 1 2.8962 0.8762 -4.5718 36 1 2.8408 0.0331 -6.8946 37 1 3.7784 -1.0666 -5.8544 38 1 0.8769 -1.4246 -6.7365 39 1 2.2768 -2.3961 -7.2595 40 1 0.9270 -4.5849 -8.3793 41 1 1.2868 -2.8467 -3.2060 42 1 0.2314 -1.7186 -4.0927 43 1 1.9003 -3.7216 2.7521 44 1 3.3151 -2.5243 4.3721 45 1 3.9094 -0.1675 3.9838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007945763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:57 Heat of formation + Delta-G solvation = -84.408954 kcal Electronic energy + Delta-G solvation = -30130.589280 eV Core-core repulsion = 25784.357643 eV Total energy + Delta-G solvation = -4346.231637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.25236 -48.98375 -40.06780 -38.79856 -37.32235 -34.44503 -34.26401 -32.35389 -30.48130 -30.43320 -29.91988 -28.39475 -25.25118 -24.99521 -23.09909 -22.94952 -22.09072 -21.47810 -19.94425 -19.27868 -18.29122 -17.75527 -16.88047 -16.66519 -16.23518 -15.92945 -15.69639 -15.44935 -15.34931 -14.92097 -14.69445 -14.55529 -14.10010 -14.06639 -13.67493 -13.37870 -13.17095 -12.92936 -12.74043 -12.46243 -12.40798 -12.29359 -12.28203 -12.10793 -11.81000 -11.66663 -11.11131 -11.05629 -10.86425 -10.74088 -10.24026 -10.22336 -9.89754 -9.87255 -9.60446 -9.48936 -9.05600 -8.90154 -8.78649 -8.37002 -6.62954 -5.75268 -3.17343 0.74170 0.81444 2.83427 3.07591 3.41546 3.44287 3.48262 3.53228 3.72167 4.10098 4.23620 4.41007 4.54940 4.56314 4.83931 4.90226 4.95008 5.04791 5.30519 5.40133 5.42925 5.52101 5.55524 5.57127 5.64883 5.68727 5.74064 5.76174 5.82128 5.92864 5.98360 6.10799 6.18556 6.26633 6.54932 6.56170 6.63458 6.70828 6.72557 6.87593 7.03621 7.38384 7.66880 7.75537 7.86556 8.44221 8.51243 9.25792 9.88082 10.44016 11.33682 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003166 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.584109 B = 8840.714194 C = 9917.272568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 H 0.110 0.890 4 C 0.517 3.483 5 O -0.526 6.526 6 N -0.719 5.719 7 C 0.126 3.874 8 H 0.085 0.915 9 C -0.114 4.114 10 C -0.140 4.140 11 C 0.168 3.832 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.144 3.856 22 C -0.139 4.139 23 C 0.166 3.834 24 F -0.117 7.117 25 C -0.168 4.168 26 C -0.062 4.062 27 C -0.170 4.170 28 C 0.133 3.867 29 F -0.132 7.132 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.394 0.606 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.089 0.911 40 H 0.253 0.747 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 12.227 20.380 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 H 0.128 0.872 4 C 0.301 3.699 5 O -0.401 6.401 6 N -0.370 5.370 7 C 0.021 3.979 8 H 0.103 0.897 9 C -0.153 4.153 10 C -0.179 4.179 11 C 0.042 3.958 12 N -0.310 5.310 13 C -0.379 4.379 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.549 5.549 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.204 1.204 21 C 0.016 3.984 22 C -0.141 4.141 23 C 0.146 3.854 24 F -0.095 7.095 25 C -0.187 4.187 26 C -0.080 4.080 27 C -0.189 4.189 28 C 0.113 3.887 29 F -0.110 7.110 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.071 11.433 20.219 23.252 hybrid contribution 0.029 -0.282 -0.486 0.563 sum 1.099 11.151 19.733 22.693 Atomic orbital electron populations 1.21867 0.91383 1.04148 1.03058 1.20179 0.98327 1.00554 0.90309 0.87179 1.20169 0.80635 0.84750 0.84345 1.90745 1.37400 1.25548 1.86436 1.46058 1.53470 1.31699 1.05748 1.21742 1.00158 0.93718 0.82250 0.89694 1.21677 1.00850 0.97129 0.95610 1.22180 1.01060 0.99159 0.95533 1.20837 0.94916 0.89068 0.90987 1.43991 1.77993 1.04089 1.04976 1.19212 1.38470 0.83841 0.96374 0.91653 1.25021 0.98707 0.97840 0.98019 1.70037 1.40581 1.38717 1.05584 0.86299 0.79360 0.84175 0.77008 1.21373 1.21553 1.20409 1.21162 0.93661 0.93487 0.90081 1.19369 1.02716 0.94299 0.97700 1.17118 0.91587 0.89043 0.87641 1.91559 1.70895 1.80266 1.66806 1.21237 1.01347 1.01674 0.94424 1.20821 0.95391 0.93169 0.98647 1.21106 1.03968 0.96072 0.97773 1.17137 0.97299 0.79026 0.95192 1.91498 1.90777 1.33976 1.94760 0.90863 0.91330 0.91053 0.77250 0.92240 0.93138 0.92712 0.92459 0.96318 0.89323 0.93701 0.92410 0.96579 0.83951 0.84011 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.87 37.15 0.33 -1.13 16 2 C -0.07 -0.87 2.79 -92.93 -0.26 -1.12 16 3 H 0.11 1.12 7.13 -51.93 -0.37 0.75 16 4 C 0.52 8.19 6.57 -10.98 -0.07 8.12 16 5 O -0.53 -10.64 14.25 5.55 0.08 -10.56 16 6 N -0.72 -10.62 4.97 -53.69 -0.27 -10.89 16 7 C 0.13 2.33 2.60 -67.81 -0.18 2.16 16 8 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 9 C -0.11 -1.88 5.36 -26.69 -0.14 -2.02 16 10 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 11 C 0.17 4.02 5.30 -3.70 -0.02 4.00 16 12 N -0.59 -15.27 3.00 -172.30 -0.52 -15.79 16 13 C -0.25 -7.16 9.58 -15.06 -0.14 -7.31 16 14 H 0.07 1.90 7.88 -52.49 -0.41 1.49 16 15 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -26.63 11.20 55.49 0.62 -26.01 16 17 Si 0.90 22.37 29.59 -169.99 -5.03 17.34 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16 22 C -0.14 -1.74 4.40 -104.49 -0.46 -2.20 16 23 C 0.17 2.18 6.14 -39.43 -0.24 1.94 16 24 F -0.12 -1.82 13.82 2.25 0.03 -1.79 16 25 C -0.17 -1.73 10.02 -39.51 -0.40 -2.12 16 26 C -0.06 -0.50 10.04 -39.60 -0.40 -0.90 16 27 C -0.17 -1.50 10.02 -39.51 -0.40 -1.89 16 28 C 0.13 1.47 7.25 -39.43 -0.29 1.19 16 29 F -0.13 -1.45 16.19 2.25 0.04 -1.42 16 30 H 0.07 0.85 6.29 -51.92 -0.33 0.53 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.60 7.56 -51.92 -0.39 0.21 16 33 H 0.39 4.46 8.02 -40.82 -0.33 4.13 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.06 1.41 7.93 -51.93 -0.41 0.99 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -33.60 368.32 -8.74 -42.34 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.31 Total: 2.14 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.93 Total: -0.93 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.16 Total: -52.68 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.07 Total: -3.21 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.60 -8.74 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007945763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.064 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds