Wall clock time and date at job start Tue Mar 31 2020 21:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47047 * 2 1 4 4 C 1.50704 * 109.47069 * 240.00139 * 2 1 3 5 5 O 1.21284 * 120.00091 * 239.99800 * 4 2 1 6 6 N 1.34782 * 120.00044 * 60.00347 * 4 2 1 7 7 C 1.46498 * 119.99884 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.49694 * 324.92487 * 7 6 4 9 9 C 1.53037 * 109.52158 * 204.84999 * 7 6 4 10 10 C 1.53045 * 109.53716 * 178.66492 * 9 7 6 11 11 C 1.53181 * 109.31309 * 61.36308 * 10 9 7 12 12 N 1.46956 * 108.89257 * 305.44707 * 11 10 9 13 13 C 1.36940 * 120.65222 * 233.53767 * 12 11 10 14 14 H 1.08000 * 119.99751 * 151.72485 * 13 12 11 15 15 C 1.38810 * 120.00078 * 331.72398 * 13 12 11 16 16 N 1.31619 * 119.99689 * 343.17980 * 15 13 12 17 17 Si 1.86795 * 119.99988 * 163.18147 * 15 13 12 18 18 H 1.48499 * 109.47320 * 89.99982 * 17 15 13 19 19 H 1.48500 * 109.47299 * 209.99808 * 17 15 13 20 20 H 1.48507 * 109.47261 * 329.99989 * 17 15 13 21 21 C 1.46921 * 118.71898 * 53.34856 * 12 11 10 22 22 C 1.50692 * 109.47118 * 120.00062 * 2 1 3 23 23 C 1.38421 * 120.02850 * 59.73124 * 22 2 1 24 24 F 1.35102 * 120.00899 * 359.96774 * 23 22 2 25 25 C 1.38470 * 119.97756 * 179.70310 * 23 22 2 26 26 C 1.38209 * 120.02359 * 0.58718 * 25 23 22 27 27 C 1.38209 * 120.04966 * 359.68460 * 26 25 23 28 28 C 1.38425 * 120.02463 * 239.99660 * 22 2 1 29 29 F 1.35098 * 120.01351 * 359.97438 * 28 22 2 30 30 H 1.09008 * 109.47365 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47212 * 300.00060 * 1 2 3 32 32 H 1.09009 * 109.47597 * 59.99885 * 1 2 3 33 33 H 0.96997 * 119.99877 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.46263 * 298.68593 * 9 7 6 35 35 H 1.09002 * 109.46114 * 58.64431 * 9 7 6 36 36 H 1.09006 * 109.49476 * 181.31974 * 10 9 7 37 37 H 1.09001 * 109.49694 * 301.41135 * 10 9 7 38 38 H 1.09007 * 109.58577 * 65.15556 * 11 10 9 39 39 H 1.09004 * 109.58758 * 185.57178 * 11 10 9 40 40 H 0.97000 * 119.99637 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.59204 * 186.78638 * 21 12 11 42 42 H 1.09006 * 109.58330 * 66.50677 * 21 12 11 43 43 H 1.08003 * 119.98916 * 180.27189 * 25 23 22 44 44 H 1.07998 * 119.97650 * 179.70645 * 26 25 23 45 45 H 1.07999 * 119.98608 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4547 7 6 2.1946 -0.9408 -3.6508 8 1 3.1942 -1.3324 -3.4624 9 6 2.2433 0.0406 -4.8241 10 6 2.7843 -0.6724 -6.0656 11 6 1.8458 -1.8245 -6.4375 12 7 1.6756 -2.6964 -5.2668 13 6 1.9133 -4.0419 -5.3579 14 1 2.2348 -4.5937 -4.4869 15 6 1.7411 -4.6967 -6.5697 16 7 1.0477 -4.1272 -7.5327 17 14 2.4932 -6.3860 -6.8337 18 1 1.5239 -7.4303 -6.4152 19 1 2.8211 -6.5628 -8.2712 20 1 3.7324 -6.5081 -6.0246 21 6 1.2494 -2.0960 -3.9954 22 6 2.0322 -0.7104 1.2304 23 6 1.6936 -2.0340 1.4528 24 9 0.9119 -2.6895 0.5671 25 6 2.1608 -2.6875 2.5806 26 6 2.9550 -2.0152 3.4903 27 6 3.2891 -0.6920 3.2721 28 6 2.8281 -0.0382 2.1419 29 9 3.1555 1.2551 1.9286 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.1488 0.5386 -2.5436 34 1 1.2394 0.4131 -5.0279 35 1 2.8962 0.8762 -4.5718 36 1 2.8408 0.0331 -6.8946 37 1 3.7784 -1.0666 -5.8544 38 1 0.8769 -1.4246 -6.7365 39 1 2.2768 -2.3961 -7.2595 40 1 0.9270 -4.5849 -8.3793 41 1 1.2868 -2.8467 -3.2060 42 1 0.2314 -1.7186 -4.0927 43 1 1.9003 -3.7216 2.7521 44 1 3.3151 -2.5243 4.3721 45 1 3.9094 -0.1675 3.9838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007945763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:56 Heat of formation + Delta-G solvation = -105.170855 kcal Electronic energy + Delta-G solvation = -30131.489584 eV Core-core repulsion = 25784.357643 eV Total energy + Delta-G solvation = -4347.131941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.06172 -50.00571 -41.28964 -39.77835 -38.89577 -35.96609 -35.41963 -34.08183 -32.36807 -31.25463 -30.96489 -29.82082 -27.28594 -25.93506 -24.24635 -23.89955 -23.84555 -22.81175 -21.33178 -20.80204 -19.14216 -18.81594 -18.68204 -17.80925 -17.38617 -16.92662 -16.85275 -16.57681 -16.43874 -16.33144 -16.12734 -15.78698 -15.44577 -15.32287 -15.08576 -14.90884 -14.67866 -14.23685 -14.10332 -13.77311 -13.56409 -13.44053 -13.29639 -13.10383 -13.04632 -12.89278 -12.76671 -12.59016 -12.50324 -12.16070 -11.99772 -11.96105 -11.77165 -11.58961 -11.33625 -10.84508 -10.64304 -10.13745 -9.89321 -9.71660 -8.71407 -7.93488 -5.39338 -0.04344 0.01343 1.41730 1.42585 1.53790 1.59340 2.06955 2.42904 2.50040 2.91389 3.20735 3.24166 3.42496 3.54804 3.70738 3.81239 3.87496 3.94696 4.05849 4.08678 4.20638 4.23840 4.24661 4.44788 4.54190 4.65720 4.73190 4.78369 4.84188 4.88805 4.89942 4.99282 5.02206 5.06383 5.09927 5.14333 5.18948 5.20969 5.24719 5.44759 5.53856 5.59891 5.73545 5.79423 6.34080 6.55395 7.10120 7.25934 7.79433 8.29623 9.12372 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003166 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.584109 B = 8840.714194 C = 9917.272568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 H 0.133 0.867 4 C 0.512 3.488 5 O -0.575 6.575 6 N -0.706 5.706 7 C 0.143 3.857 8 H 0.054 0.946 9 C -0.104 4.104 10 C -0.130 4.130 11 C 0.172 3.828 12 N -0.607 5.607 13 C -0.271 4.271 14 H 0.049 0.951 15 C -0.042 4.042 16 N -0.928 5.928 17 Si 0.965 3.035 18 H -0.283 1.283 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.148 3.852 22 C -0.158 4.158 23 C 0.128 3.872 24 F -0.143 7.143 25 C -0.174 4.174 26 C -0.050 4.050 27 C -0.161 4.161 28 C 0.120 3.880 29 F -0.133 7.133 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.415 0.585 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.006 0.994 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.154 0.846 44 H 0.183 0.817 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 14.283 22.181 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 H 0.151 0.849 4 C 0.299 3.701 5 O -0.454 6.454 6 N -0.358 5.358 7 C 0.037 3.963 8 H 0.072 0.928 9 C -0.142 4.142 10 C -0.169 4.169 11 C 0.047 3.953 12 N -0.331 5.331 13 C -0.401 4.401 14 H 0.067 0.933 15 C -0.238 4.238 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.209 1.209 19 H -0.208 1.208 20 H -0.202 1.202 21 C 0.021 3.979 22 C -0.161 4.161 23 C 0.108 3.892 24 F -0.121 7.121 25 C -0.193 4.193 26 C -0.068 4.068 27 C -0.179 4.179 28 C 0.101 3.899 29 F -0.111 7.111 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.172 0.828 44 H 0.200 0.800 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.760 13.549 22.037 25.929 hybrid contribution -0.201 -0.950 -0.949 1.358 sum 1.560 12.599 21.088 24.615 Atomic orbital electron populations 1.21878 0.89897 1.03246 1.05029 1.20192 0.99435 1.00832 0.88053 0.84929 1.20955 0.79560 0.84131 0.85498 1.90722 1.39624 1.27833 1.87186 1.45830 1.53491 1.31928 1.04516 1.21227 0.97218 0.93306 0.84587 0.92820 1.21613 1.02661 0.96954 0.92943 1.22019 0.98966 0.97948 0.97988 1.20727 0.95166 0.89943 0.89497 1.44218 1.78611 1.03750 1.06558 1.19358 1.38936 0.85510 0.96299 0.93307 1.25724 0.99067 1.01386 0.97603 1.70161 1.41343 1.40073 1.05766 0.85323 0.78458 0.79941 0.77016 1.20932 1.20781 1.20209 1.21164 0.94875 0.94022 0.87815 1.19508 1.03732 0.94430 0.98380 1.17580 0.93048 0.89898 0.88628 1.91489 1.71874 1.80830 1.67938 1.21561 1.01312 1.02446 0.93950 1.21293 0.93624 0.92913 0.98960 1.21546 1.02966 0.96278 0.97136 1.17334 0.97550 0.79156 0.95887 1.91490 1.90784 1.33981 1.94864 0.93177 0.89101 0.89311 0.74735 0.90420 0.89414 0.89513 0.93552 0.97604 0.92707 0.93764 0.95737 0.96229 0.82800 0.80008 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.87 71.98 0.64 -2.06 16 2 C -0.06 -1.48 2.79 -12.29 -0.03 -1.52 16 3 H 0.13 2.42 7.13 -2.39 -0.02 2.40 16 4 C 0.51 16.37 6.57 87.66 0.58 16.95 16 5 O -0.57 -24.36 14.25 -3.04 -0.04 -24.40 16 6 N -0.71 -20.27 4.97 -442.16 -2.20 -22.47 16 7 C 0.14 5.28 2.60 45.07 0.12 5.40 16 8 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 9 C -0.10 -3.16 5.36 30.62 0.16 -2.99 16 10 C -0.13 -4.76 6.08 30.67 0.19 -4.58 16 11 C 0.17 8.41 5.30 86.35 0.46 8.87 16 12 N -0.61 -32.81 3.00 -699.03 -2.10 -34.91 16 13 C -0.27 -16.26 9.58 84.03 0.81 -15.46 16 14 H 0.05 3.02 7.88 -2.91 -0.02 2.99 16 15 C -0.04 -2.45 4.92 84.86 0.42 -2.03 16 16 N -0.93 -56.07 11.20 21.65 0.24 -55.83 16 17 Si 0.97 47.18 29.59 68.60 2.03 49.21 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 C 0.15 6.91 6.09 86.36 0.53 7.43 16 22 C -0.16 -3.92 4.40 -19.78 -0.09 -4.00 16 23 C 0.13 3.45 6.14 22.37 0.14 3.59 16 24 F -0.14 -4.77 13.82 44.97 0.62 -4.14 16 25 C -0.17 -3.45 10.02 22.32 0.22 -3.23 16 26 C -0.05 -0.67 10.04 22.26 0.22 -0.45 16 27 C -0.16 -2.35 10.02 22.32 0.22 -2.13 16 28 C 0.12 2.46 7.25 22.37 0.16 2.62 16 29 F -0.13 -2.65 16.19 44.97 0.73 -1.93 16 30 H 0.05 1.20 6.29 -2.38 -0.01 1.18 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.31 7.56 -2.38 -0.02 1.30 16 33 H 0.42 8.39 8.02 -92.71 -0.74 7.64 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.05 3.03 6.07 -2.38 -0.01 3.02 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.02 1.26 7.93 -2.39 -0.02 1.24 16 42 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 44 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 45 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -78.62 368.32 4.29 -74.32 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.28 Total: 13.75 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.74 Total: 6.40 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.05 Total: -113.20 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 1.35 Total: -6.07 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -78.62 4.29 -74.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007945763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.850 kcal (2) G-P(sol) polarization free energy of solvation -78.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds