Wall clock time and date at job start Tue Mar 31 2020 21:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47074 * 2 1 4 4 C 1.50703 * 109.46769 * 239.99966 * 2 1 3 5 5 O 1.21274 * 120.00074 * 239.99486 * 4 2 1 6 6 N 1.34772 * 119.99530 * 60.00326 * 4 2 1 7 7 C 1.46507 * 119.99828 * 179.97438 * 6 4 2 8 8 H 1.08993 * 109.49540 * 325.06414 * 7 6 4 9 9 C 1.53036 * 109.49666 * 204.99967 * 7 6 4 10 10 C 1.53045 * 109.53497 * 178.68271 * 9 7 6 11 11 C 1.53198 * 109.31342 * 61.36427 * 10 9 7 12 12 N 1.46925 * 108.77376 * 305.36486 * 11 10 9 13 13 C 1.36931 * 120.62846 * 233.58067 * 12 11 10 14 14 H 1.08008 * 119.99843 * 152.40033 * 13 12 11 15 15 C 1.38812 * 120.00461 * 332.40196 * 13 12 11 16 16 N 1.31624 * 119.99771 * 334.91471 * 15 13 12 17 17 Si 1.86796 * 120.00026 * 154.90837 * 15 13 12 18 18 H 1.48503 * 109.47037 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47658 * 330.00491 * 17 15 13 20 20 H 1.48500 * 109.47270 * 210.00244 * 17 15 13 21 21 C 1.46931 * 118.73724 * 53.86046 * 12 11 10 22 22 C 1.50704 * 109.47070 * 120.00178 * 2 1 3 23 23 C 1.38232 * 119.98430 * 59.72639 * 22 2 1 24 24 C 1.38190 * 120.04449 * 179.72041 * 23 22 2 25 25 C 1.38490 * 120.02561 * 0.55406 * 24 23 22 26 26 F 1.35108 * 120.01391 * 179.74520 * 25 24 23 27 27 C 1.38394 * 119.97622 * 359.71821 * 25 24 23 28 28 C 1.38443 * 119.95128 * 0.02562 * 27 25 24 29 29 F 1.35099 * 120.01589 * 179.97438 * 28 27 25 30 30 H 1.09006 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47058 * 299.99535 * 1 2 3 32 32 H 1.08997 * 109.47779 * 59.99754 * 1 2 3 33 33 H 0.96999 * 120.00643 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46347 * 58.66436 * 9 7 6 35 35 H 1.08999 * 109.46503 * 298.70204 * 9 7 6 36 36 H 1.08998 * 109.50167 * 301.41524 * 10 9 7 37 37 H 1.09002 * 109.52418 * 181.32924 * 10 9 7 38 38 H 1.08999 * 109.58512 * 185.57589 * 11 10 9 39 39 H 1.09004 * 109.58311 * 65.14992 * 11 10 9 40 40 H 0.96996 * 120.00175 * 354.25433 * 16 15 13 41 41 H 1.09000 * 109.58814 * 65.92708 * 21 12 11 42 42 H 1.09000 * 109.58530 * 186.34896 * 21 12 11 43 43 H 1.07994 * 119.97799 * 359.97438 * 23 22 2 44 44 H 1.08004 * 119.98376 * 180.24645 * 24 23 22 45 45 H 1.08000 * 120.02560 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7066 -0.2499 -2.4545 7 6 2.1953 -0.9402 -3.6508 8 1 3.1941 -1.3332 -3.4615 9 6 2.2468 0.0429 -4.8225 10 6 2.7882 -0.6690 -6.0644 11 6 1.8483 -1.8193 -6.4392 12 7 1.6789 -2.6918 -5.2693 13 6 1.9168 -4.0371 -5.3620 14 1 2.2284 -4.5918 -4.4892 15 6 1.7574 -4.6880 -6.5776 16 7 0.9439 -4.1941 -7.4869 17 14 2.6976 -6.2647 -6.9231 18 1 1.8919 -7.4295 -6.4765 19 1 3.9872 -6.2435 -6.1871 20 1 2.9611 -6.3747 -8.3804 21 6 1.2433 -2.0943 -3.9996 22 6 2.0323 -0.7105 1.2305 23 6 1.6935 -2.0322 1.4517 24 6 2.1582 -2.6866 2.5767 25 6 2.9545 -2.0154 3.4895 26 9 3.4044 -2.6539 4.5919 27 6 3.2897 -0.6904 3.2718 28 6 2.8280 -0.0373 2.1418 29 9 3.1540 1.2563 1.9283 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.1487 0.5386 -2.5435 34 1 2.9006 0.8771 -4.5683 35 1 1.2437 0.4172 -5.0270 36 1 3.7814 -1.0651 -5.8528 37 1 2.8471 0.0372 -6.8926 38 1 2.2795 -2.3903 -7.2615 39 1 0.8804 -1.4174 -6.7386 40 1 0.3933 -3.4234 -7.2778 41 1 0.2270 -1.7144 -4.1041 42 1 1.2750 -2.8468 -3.2117 43 1 1.0686 -2.5550 0.7429 44 1 1.8961 -3.7205 2.7465 45 1 3.9109 -0.1662 3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009590036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:16 Heat of formation + Delta-G solvation = -90.892438 kcal Electronic energy + Delta-G solvation = -29522.164376 eV Core-core repulsion = 25175.651594 eV Total energy + Delta-G solvation = -4346.512782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.29894 -49.23171 -40.35990 -38.85837 -37.49198 -34.55452 -34.33624 -32.50780 -31.06261 -30.44415 -29.59509 -28.41495 -25.15538 -25.02457 -23.48930 -22.89625 -22.22115 -21.46938 -20.02417 -19.31485 -18.51436 -17.70152 -17.41039 -16.88938 -16.35893 -16.16938 -15.92935 -15.54396 -15.32714 -15.00368 -14.70852 -14.44610 -14.29817 -14.08480 -13.80963 -13.59831 -13.42820 -13.11755 -13.01933 -12.75263 -12.60392 -12.41183 -12.18971 -12.05747 -11.96260 -11.50929 -11.45713 -11.19270 -10.74789 -10.72321 -10.39066 -10.11712 -10.07469 -9.99942 -9.62059 -9.34558 -9.29248 -8.94266 -8.86338 -8.30897 -6.89498 -6.07192 -3.23133 0.66607 0.78492 2.71242 2.99576 3.37040 3.51816 3.56053 3.59428 3.71808 4.07004 4.18863 4.29535 4.54888 4.61329 4.72287 4.83890 4.87891 4.99744 5.16419 5.28822 5.31743 5.36406 5.45839 5.53680 5.54768 5.57686 5.60562 5.66159 5.76589 5.86705 5.91805 6.00903 6.02024 6.09812 6.35208 6.41482 6.49202 6.53216 6.54986 6.67453 6.84581 7.04485 7.15884 7.63516 8.03213 8.34213 8.58019 9.10608 9.84596 10.26785 11.21493 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.002865 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.790505 B = 9771.857795 C =11053.302114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.108 0.892 4 C 0.515 3.485 5 O -0.526 6.526 6 N -0.720 5.720 7 C 0.126 3.874 8 H 0.087 0.913 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.147 3.853 12 N -0.595 5.595 13 C -0.348 4.348 14 H 0.057 0.943 15 C -0.023 4.023 16 N -0.917 5.917 17 Si 1.065 2.935 18 H -0.294 1.294 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.146 3.854 22 C -0.107 4.107 23 C -0.026 4.026 24 C -0.161 4.161 25 C 0.128 3.872 26 F -0.133 7.133 27 C -0.195 4.195 28 C 0.134 3.866 29 F -0.131 7.131 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.395 0.605 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.017 0.983 40 H 0.268 0.732 41 H 0.015 0.985 42 H 0.058 0.942 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 12.594 18.565 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.126 0.874 4 C 0.300 3.700 5 O -0.402 6.402 6 N -0.371 5.371 7 C 0.021 3.979 8 H 0.105 0.895 9 C -0.153 4.153 10 C -0.174 4.174 11 C 0.021 3.979 12 N -0.319 5.319 13 C -0.477 4.477 14 H 0.075 0.925 15 C -0.225 4.225 16 N -0.557 5.557 17 Si 0.895 3.105 18 H -0.221 1.221 19 H -0.218 1.218 20 H -0.212 1.212 21 C 0.019 3.981 22 C -0.108 4.108 23 C -0.044 4.044 24 C -0.180 4.180 25 C 0.108 3.892 26 F -0.112 7.112 27 C -0.215 4.215 28 C 0.115 3.885 29 F -0.109 7.109 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.410 10.703 17.501 20.518 hybrid contribution -0.380 1.752 1.383 2.264 sum 0.030 12.455 18.884 22.621 Atomic orbital electron populations 1.21810 0.91344 1.03533 1.03124 1.20231 0.98210 1.00564 0.90496 0.87376 1.20251 0.80625 0.84827 0.84340 1.90761 1.37243 1.25733 1.86435 1.46097 1.53434 1.31736 1.05805 1.21826 1.00216 0.93585 0.82319 0.89512 1.21671 1.00896 0.97240 0.95503 1.22060 1.00907 0.98628 0.95796 1.21015 0.95125 0.90286 0.91497 1.44076 1.78183 1.04280 1.05331 1.20008 1.44650 0.83963 0.99037 0.92545 1.25842 0.98778 1.03396 0.94500 1.70766 1.21464 1.25557 1.37946 0.83545 0.75896 0.75137 0.75961 1.22142 1.21814 1.21164 1.21246 0.93380 0.93478 0.90036 1.19416 1.00225 0.95359 0.95830 1.20740 0.96390 0.92262 0.95015 1.21216 1.00219 1.01641 0.94914 1.17297 0.96952 0.90244 0.84695 1.91529 1.87372 1.81560 1.50720 1.20908 1.06099 0.94679 0.99768 1.17045 0.97535 0.79043 0.94903 1.91502 1.90919 1.33884 1.94626 0.91388 0.91179 0.91204 0.77183 0.92816 0.92236 0.92058 0.92481 0.89996 0.96470 0.92094 0.96694 0.92299 0.83865 0.83847 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.90 37.16 0.33 -0.77 16 2 C -0.07 -0.75 2.88 -92.92 -0.27 -1.02 16 3 H 0.11 0.97 7.12 -51.93 -0.37 0.60 16 4 C 0.52 7.27 7.00 -10.99 -0.08 7.19 16 5 O -0.53 -9.76 14.79 5.56 0.08 -9.68 16 6 N -0.72 -9.57 4.97 -53.47 -0.27 -9.84 16 7 C 0.13 2.17 2.62 -67.59 -0.18 2.00 16 8 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 9 C -0.11 -1.77 5.35 -26.69 -0.14 -1.91 16 10 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 11 C 0.15 3.34 4.69 -3.71 -0.02 3.32 16 12 N -0.59 -14.87 2.85 -172.05 -0.49 -15.36 16 13 C -0.35 -9.84 9.49 -15.06 -0.14 -9.98 16 14 H 0.06 1.64 7.95 -52.48 -0.42 1.23 16 15 C -0.02 -0.67 4.68 -17.43 -0.08 -0.75 16 16 N -0.92 -27.29 12.40 55.49 0.69 -26.60 16 17 Si 1.07 25.54 29.99 -169.99 -5.10 20.44 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 C 0.15 3.09 6.12 -3.48 -0.02 3.07 16 22 C -0.11 -1.20 4.40 -104.54 -0.46 -1.66 16 23 C -0.03 -0.29 7.93 -39.60 -0.31 -0.60 16 24 C -0.16 -1.66 10.02 -39.51 -0.40 -2.05 16 25 C 0.13 1.34 7.30 -39.43 -0.29 1.06 16 26 F -0.13 -1.44 17.27 2.25 0.04 -1.40 16 27 C -0.19 -1.97 10.01 -39.45 -0.39 -2.36 16 28 C 0.13 1.47 7.24 -39.43 -0.29 1.18 16 29 F -0.13 -1.42 16.19 2.25 0.04 -1.39 16 30 H 0.07 0.57 7.37 -51.93 -0.38 0.19 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 33 H 0.39 3.91 8.02 -40.82 -0.33 3.58 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 2.11 6.29 -51.93 -0.33 1.78 16 39 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.27 8.00 6.72 -40.82 -0.27 7.73 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.14 1.56 7.51 -52.49 -0.39 1.17 16 44 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -32.71 371.40 -8.58 -41.30 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.28 Total: 2.79 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.90 Total: -5.87 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.07 Total: -51.80 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.10 Total: 20.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.71 -8.58 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009590036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.593 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds