Wall clock time and date at job start Tue Mar 31 2020 21:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47074 * 2 1 4 4 C 1.50703 * 109.46769 * 239.99966 * 2 1 3 5 5 O 1.21274 * 120.00074 * 239.99486 * 4 2 1 6 6 N 1.34772 * 119.99530 * 60.00326 * 4 2 1 7 7 C 1.46507 * 119.99828 * 179.97438 * 6 4 2 8 8 H 1.08993 * 109.49540 * 325.06414 * 7 6 4 9 9 C 1.53036 * 109.49666 * 204.99967 * 7 6 4 10 10 C 1.53045 * 109.53497 * 178.68271 * 9 7 6 11 11 C 1.53198 * 109.31342 * 61.36427 * 10 9 7 12 12 N 1.46925 * 108.77376 * 305.36486 * 11 10 9 13 13 C 1.36931 * 120.62846 * 233.58067 * 12 11 10 14 14 H 1.08008 * 119.99843 * 152.40033 * 13 12 11 15 15 C 1.38812 * 120.00461 * 332.40196 * 13 12 11 16 16 N 1.31624 * 119.99771 * 334.91471 * 15 13 12 17 17 Si 1.86796 * 120.00026 * 154.90837 * 15 13 12 18 18 H 1.48503 * 109.47037 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47658 * 330.00491 * 17 15 13 20 20 H 1.48500 * 109.47270 * 210.00244 * 17 15 13 21 21 C 1.46931 * 118.73724 * 53.86046 * 12 11 10 22 22 C 1.50704 * 109.47070 * 120.00178 * 2 1 3 23 23 C 1.38232 * 119.98430 * 59.72639 * 22 2 1 24 24 C 1.38190 * 120.04449 * 179.72041 * 23 22 2 25 25 C 1.38490 * 120.02561 * 0.55406 * 24 23 22 26 26 F 1.35108 * 120.01391 * 179.74520 * 25 24 23 27 27 C 1.38394 * 119.97622 * 359.71821 * 25 24 23 28 28 C 1.38443 * 119.95128 * 0.02562 * 27 25 24 29 29 F 1.35099 * 120.01589 * 179.97438 * 28 27 25 30 30 H 1.09006 * 109.47220 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47058 * 299.99535 * 1 2 3 32 32 H 1.08997 * 109.47779 * 59.99754 * 1 2 3 33 33 H 0.96999 * 120.00643 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46347 * 58.66436 * 9 7 6 35 35 H 1.08999 * 109.46503 * 298.70204 * 9 7 6 36 36 H 1.08998 * 109.50167 * 301.41524 * 10 9 7 37 37 H 1.09002 * 109.52418 * 181.32924 * 10 9 7 38 38 H 1.08999 * 109.58512 * 185.57589 * 11 10 9 39 39 H 1.09004 * 109.58311 * 65.14992 * 11 10 9 40 40 H 0.96996 * 120.00175 * 354.25433 * 16 15 13 41 41 H 1.09000 * 109.58814 * 65.92708 * 21 12 11 42 42 H 1.09000 * 109.58530 * 186.34896 * 21 12 11 43 43 H 1.07994 * 119.97799 * 359.97438 * 23 22 2 44 44 H 1.08004 * 119.98376 * 180.24645 * 24 23 22 45 45 H 1.08000 * 120.02560 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7066 -0.2499 -2.4545 7 6 2.1953 -0.9402 -3.6508 8 1 3.1941 -1.3332 -3.4615 9 6 2.2468 0.0429 -4.8225 10 6 2.7882 -0.6690 -6.0644 11 6 1.8483 -1.8193 -6.4392 12 7 1.6789 -2.6918 -5.2693 13 6 1.9168 -4.0371 -5.3620 14 1 2.2284 -4.5918 -4.4892 15 6 1.7574 -4.6880 -6.5776 16 7 0.9439 -4.1941 -7.4869 17 14 2.6976 -6.2647 -6.9231 18 1 1.8919 -7.4295 -6.4765 19 1 3.9872 -6.2435 -6.1871 20 1 2.9611 -6.3747 -8.3804 21 6 1.2433 -2.0943 -3.9996 22 6 2.0323 -0.7105 1.2305 23 6 1.6935 -2.0322 1.4517 24 6 2.1582 -2.6866 2.5767 25 6 2.9545 -2.0154 3.4895 26 9 3.4044 -2.6539 4.5919 27 6 3.2897 -0.6904 3.2718 28 6 2.8280 -0.0373 2.1418 29 9 3.1540 1.2563 1.9283 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.1487 0.5386 -2.5435 34 1 2.9006 0.8771 -4.5683 35 1 1.2437 0.4172 -5.0270 36 1 3.7814 -1.0651 -5.8528 37 1 2.8471 0.0372 -6.8926 38 1 2.2795 -2.3903 -7.2615 39 1 0.8804 -1.4174 -6.7386 40 1 0.3933 -3.4234 -7.2778 41 1 0.2270 -1.7144 -4.1041 42 1 1.2750 -2.8468 -3.2117 43 1 1.0686 -2.5550 0.7429 44 1 1.8961 -3.7205 2.7465 45 1 3.9109 -0.1662 3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009590036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:15 Heat of formation + Delta-G solvation = -110.121294 kcal Electronic energy + Delta-G solvation = -29522.998202 eV Core-core repulsion = 25175.651594 eV Total energy + Delta-G solvation = -4347.346608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.12426 -50.06426 -41.45128 -39.93226 -38.97335 -36.14533 -35.28255 -34.10734 -32.29609 -31.87702 -30.71878 -29.64367 -27.10190 -25.90975 -24.44834 -24.07488 -23.84626 -22.74521 -21.32710 -20.74722 -19.42974 -19.34034 -18.59554 -17.89176 -17.44504 -17.02309 -16.79310 -16.49596 -16.38392 -16.32990 -16.03059 -15.84141 -15.54360 -15.47386 -15.24440 -15.03676 -14.83469 -14.36903 -14.09720 -13.86914 -13.80092 -13.64318 -13.38424 -13.03325 -12.98562 -12.80627 -12.62668 -12.42595 -12.29448 -12.21170 -11.94743 -11.87893 -11.84241 -11.68643 -11.25084 -10.82581 -10.60536 -10.13081 -10.10036 -9.70562 -8.94627 -8.28375 -5.43582 -0.17060 -0.03244 1.55266 1.59439 1.63096 1.81816 2.00935 2.38816 2.63357 2.77242 3.17867 3.23775 3.37385 3.46841 3.56623 3.72775 3.81649 3.91564 4.00781 4.05243 4.10592 4.13147 4.24856 4.34626 4.43393 4.63408 4.69762 4.73064 4.73555 4.81865 4.82757 4.88486 4.91728 4.99707 5.00776 5.06778 5.14916 5.18159 5.24764 5.25964 5.38802 5.53308 5.68598 5.80613 6.37380 6.55949 7.02883 7.26326 7.74656 8.15899 8.96151 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.002865 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.790505 B = 9771.857795 C =11053.302114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 H 0.129 0.871 4 C 0.513 3.487 5 O -0.576 6.576 6 N -0.705 5.705 7 C 0.143 3.857 8 H 0.053 0.947 9 C -0.105 4.105 10 C -0.126 4.126 11 C 0.150 3.850 12 N -0.616 5.616 13 C -0.359 4.359 14 H 0.037 0.963 15 C -0.068 4.068 16 N -0.937 5.937 17 Si 1.112 2.888 18 H -0.282 1.282 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.149 3.851 22 C -0.116 4.116 23 C -0.038 4.038 24 C -0.163 4.163 25 C 0.120 3.880 26 F -0.135 7.135 27 C -0.191 4.191 28 C 0.127 3.873 29 F -0.130 7.130 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.417 0.583 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.015 0.985 40 H 0.257 0.743 41 H 0.025 0.975 42 H 0.028 0.972 43 H 0.138 0.862 44 H 0.157 0.843 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 14.814 19.428 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 H 0.147 0.853 4 C 0.299 3.701 5 O -0.454 6.454 6 N -0.357 5.357 7 C 0.036 3.964 8 H 0.071 0.929 9 C -0.143 4.143 10 C -0.165 4.165 11 C 0.024 3.976 12 N -0.341 5.341 13 C -0.489 4.489 14 H 0.055 0.945 15 C -0.265 4.265 16 N -0.578 5.578 17 Si 0.937 3.063 18 H -0.209 1.209 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.022 3.978 22 C -0.118 4.118 23 C -0.056 4.056 24 C -0.181 4.181 25 C 0.100 3.900 26 F -0.114 7.114 27 C -0.211 4.211 28 C 0.108 3.892 29 F -0.108 7.108 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.156 0.844 44 H 0.175 0.825 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.322 12.990 18.390 22.518 hybrid contribution -0.384 1.052 1.180 1.627 sum -0.063 14.043 19.570 24.087 Atomic orbital electron populations 1.21855 0.89241 1.03514 1.04973 1.20237 0.99756 1.00604 0.87769 0.85342 1.20991 0.79510 0.84159 0.85401 1.90748 1.39457 1.28067 1.87158 1.45845 1.53441 1.31964 1.04474 1.21288 0.97204 0.93200 0.84719 0.92903 1.21615 1.02806 0.97014 0.92821 1.21932 0.98725 0.97508 0.98346 1.20953 0.95832 0.91035 0.89744 1.44284 1.78914 1.03742 1.07117 1.20135 1.44288 0.85840 0.98630 0.94519 1.27102 0.99031 1.05989 0.94405 1.70872 1.22638 1.25904 1.38395 0.82908 0.75199 0.72292 0.75949 1.20852 1.20850 1.20848 1.21283 0.94838 0.94034 0.87613 1.19585 1.00390 0.95516 0.96289 1.20780 0.96932 0.92600 0.95306 1.21397 0.99815 1.02343 0.94575 1.17377 0.97267 0.90574 0.84760 1.91523 1.87427 1.81642 1.50794 1.21112 1.05659 0.94508 0.99793 1.17082 0.97737 0.79195 0.95216 1.91501 1.90936 1.33725 1.94652 0.92386 0.89220 0.89487 0.74591 0.89295 0.90133 0.93509 0.89321 0.93704 0.96725 0.93348 0.95738 0.95359 0.84399 0.82538 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.90 71.98 0.64 -1.17 16 2 C -0.06 -1.16 2.88 -12.28 -0.04 -1.19 16 3 H 0.13 1.89 7.12 -2.39 -0.02 1.87 16 4 C 0.51 13.97 7.00 87.66 0.61 14.58 16 5 O -0.58 -21.74 14.79 -3.01 -0.04 -21.79 16 6 N -0.71 -17.35 4.97 -441.49 -2.20 -19.54 16 7 C 0.14 4.80 2.62 45.21 0.12 4.92 16 8 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 9 C -0.10 -2.90 5.35 30.62 0.16 -2.73 16 10 C -0.13 -4.33 6.08 30.68 0.19 -4.14 16 11 C 0.15 6.89 4.69 86.36 0.41 7.30 16 12 N -0.62 -31.62 2.85 -698.23 -1.99 -33.60 16 13 C -0.36 -21.08 9.49 84.03 0.80 -20.28 16 14 H 0.04 2.25 7.95 -2.91 -0.02 2.23 16 15 C -0.07 -3.98 4.68 84.86 0.40 -3.58 16 16 N -0.94 -57.06 12.40 21.65 0.27 -56.79 16 17 Si 1.11 52.49 29.99 68.60 2.06 54.55 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 C 0.15 6.40 6.12 86.51 0.53 6.93 16 22 C -0.12 -2.48 4.40 -19.81 -0.09 -2.56 16 23 C -0.04 -0.84 7.93 22.26 0.18 -0.66 16 24 C -0.16 -3.29 10.02 22.32 0.22 -3.06 16 25 C 0.12 2.42 7.30 22.37 0.16 2.58 16 26 F -0.14 -2.79 17.27 44.97 0.78 -2.02 16 27 C -0.19 -3.60 10.01 22.36 0.22 -3.37 16 28 C 0.13 2.58 7.24 22.37 0.16 2.75 16 29 F -0.13 -2.54 16.19 44.97 0.73 -1.81 16 30 H 0.06 0.89 7.37 -2.38 -0.02 0.87 16 31 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.09 0.84 7.56 -2.39 -0.02 0.82 16 33 H 0.42 6.73 8.02 -92.71 -0.74 5.98 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.04 2.37 6.29 -2.39 -0.02 2.36 16 39 H 0.01 0.68 7.87 -2.38 -0.02 0.66 16 40 H 0.26 15.78 6.72 -92.71 -0.62 15.15 16 41 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.03 1.35 7.93 -2.39 -0.02 1.33 16 43 H 0.14 3.11 7.51 -2.91 -0.02 3.09 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -74.51 371.40 4.70 -69.80 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.42 Total: 14.91 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.68 Total: -3.70 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.91 Total: -109.94 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.04 Total: -21.79 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 1.50 Total: -3.83 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.06 Total: 54.55 kcal Total: -74.51 4.70 -69.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009590036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.320 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds