Wall clock time and date at job start Tue Mar 31 2020 21:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47129 * 2 1 4 4 C 1.50693 * 109.47466 * 239.99701 * 2 1 3 5 5 O 1.21280 * 120.00302 * 240.00116 * 4 2 1 6 6 N 1.34781 * 119.99957 * 59.99879 * 4 2 1 7 7 C 1.46500 * 119.99967 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.49580 * 34.93756 * 7 6 4 9 9 C 1.53041 * 109.49714 * 154.99971 * 7 6 4 10 10 C 1.53036 * 109.53794 * 181.31702 * 9 7 6 11 11 C 1.53188 * 109.31440 * 298.63657 * 10 9 7 12 12 N 1.46928 * 108.77542 * 54.64002 * 11 10 9 13 13 C 1.36934 * 120.63661 * 126.36763 * 12 11 10 14 14 H 1.08003 * 119.99546 * 332.31892 * 13 12 11 15 15 C 1.38813 * 119.99930 * 152.58128 * 13 12 11 16 16 N 1.31617 * 120.00213 * 342.49846 * 15 13 12 17 17 Si 1.86797 * 119.99438 * 162.49328 * 15 13 12 18 18 H 1.48501 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46821 * 120.00595 * 17 15 13 20 20 H 1.48497 * 109.47515 * 240.00306 * 17 15 13 21 21 C 1.46931 * 118.73493 * 306.63900 * 12 11 10 22 22 C 1.50705 * 109.46955 * 119.99488 * 2 1 3 23 23 C 1.38255 * 119.96543 * 240.00253 * 22 2 1 24 24 C 1.38210 * 120.06818 * 179.97438 * 23 22 2 25 25 C 1.38410 * 120.00261 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.03808 * 179.97438 * 25 24 23 27 27 C 1.38651 * 119.92648 * 359.97438 * 25 24 23 28 28 F 1.35099 * 120.03179 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.95974 * 59.72584 * 22 2 1 30 30 H 1.08999 * 109.47432 * 300.00412 * 1 2 3 31 31 H 1.09004 * 109.46588 * 60.00420 * 1 2 3 32 32 H 1.08995 * 109.46949 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00232 * 0.02562 * 6 4 2 34 34 H 1.09008 * 109.45567 * 61.29851 * 9 7 6 35 35 H 1.08995 * 109.46015 * 301.34412 * 9 7 6 36 36 H 1.09006 * 109.49540 * 178.68709 * 10 9 7 37 37 H 1.08997 * 109.52357 * 58.60423 * 10 9 7 38 38 H 1.08997 * 109.58842 * 294.84947 * 11 10 9 39 39 H 1.09005 * 109.58971 * 174.42244 * 11 10 9 40 40 H 0.96995 * 119.99665 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.58425 * 173.14633 * 21 12 11 42 42 H 1.09001 * 109.58503 * 293.57191 * 21 12 11 43 43 H 1.08000 * 119.96389 * 359.97438 * 23 22 2 44 44 H 1.08002 * 119.99730 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.00371 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1957 -0.9404 -3.6506 8 1 2.2340 -2.0131 -3.4614 9 6 1.2519 -0.6619 -4.8227 10 6 1.7436 -1.4091 -6.0645 11 6 3.1410 -0.9053 -6.4387 12 7 4.0199 -1.0359 -5.2685 13 6 5.2090 -1.7086 -5.3606 14 1 5.3275 -2.4988 -6.0872 15 6 6.2603 -1.3784 -4.5164 16 7 6.2560 -0.2268 -3.8791 17 14 7.6812 -2.5687 -4.2848 18 1 7.4485 -3.7834 -5.1068 19 1 8.9464 -1.9181 -4.7108 20 1 7.7787 -2.9507 -2.8531 21 6 3.5957 -0.4361 -3.9960 22 6 2.0323 -0.7103 1.2306 23 6 2.8270 -0.0377 2.1402 24 6 3.2884 -0.6869 3.2697 25 6 2.9545 -2.0117 3.4915 26 9 3.4056 -2.6471 4.5951 27 6 2.1566 -2.6859 2.5798 28 9 1.8290 -3.9789 2.7945 29 6 1.6932 -2.0319 1.4514 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1494 0.5388 -2.5436 34 1 1.2327 0.4087 -5.0270 35 1 0.2476 -1.0009 -4.5688 36 1 1.0581 -1.2290 -6.8926 37 1 1.7865 -2.4776 -5.8534 38 1 3.0841 0.1413 -6.7380 39 1 3.5364 -1.5017 -7.2610 40 1 6.9904 0.0036 -3.2889 41 1 4.2909 -0.7231 -3.2072 42 1 3.5766 0.6495 -4.0922 43 1 3.0876 0.9962 1.9678 44 1 3.9095 -0.1604 3.9793 45 1 1.0690 -2.5550 0.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009590042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:23 Heat of formation + Delta-G solvation = -87.463336 kcal Electronic energy + Delta-G solvation = -29763.224688 eV Core-core repulsion = 25416.860603 eV Total energy + Delta-G solvation = -4346.364085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.49411 -48.57011 -40.27738 -38.74240 -37.27459 -34.24078 -34.01422 -32.65673 -30.91789 -30.08480 -29.57050 -28.48747 -25.29063 -24.95968 -23.38316 -22.71916 -22.16325 -21.34676 -19.87591 -19.25688 -18.01163 -17.48806 -17.12678 -16.77446 -16.49720 -16.26425 -15.68097 -15.08352 -14.98613 -14.74733 -14.53106 -14.32590 -14.08623 -14.00046 -13.74438 -13.60963 -13.36142 -13.06293 -12.72998 -12.55736 -12.43001 -12.35152 -12.16103 -11.86126 -11.78562 -11.44995 -11.27910 -11.02519 -10.75781 -10.72280 -10.50463 -10.23721 -9.99934 -9.95052 -9.54200 -9.37834 -9.11964 -8.71200 -8.56705 -8.43830 -6.66897 -5.76795 -3.19510 0.79436 0.93547 2.95177 3.15064 3.42064 3.50851 3.51663 3.58349 3.70839 4.21177 4.31216 4.42736 4.53780 4.78995 4.85311 4.93424 5.03731 5.13028 5.31741 5.37248 5.42201 5.51412 5.53405 5.61289 5.62790 5.67054 5.74463 5.78556 5.86530 5.88516 6.05457 6.11760 6.24739 6.31279 6.39751 6.47472 6.64479 6.67667 6.75409 6.90457 6.94162 7.27909 7.70883 7.81950 7.88954 8.46884 8.59614 9.22357 9.86410 10.40722 11.31388 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003593 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.254685 B = 7790.939543 C = 9338.747266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.512 3.488 5 O -0.523 6.523 6 N -0.718 5.718 7 C 0.117 3.883 8 H 0.081 0.919 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.142 3.858 12 N -0.589 5.589 13 C -0.256 4.256 14 H 0.067 0.933 15 C 0.008 3.992 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.288 1.288 21 C 0.167 3.833 22 C -0.043 4.043 23 C -0.091 4.091 24 C -0.127 4.127 25 C 0.063 3.937 26 F -0.132 7.132 27 C 0.066 3.934 28 F -0.131 7.131 29 C -0.090 4.090 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.392 0.608 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.016 0.984 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.787 4.391 10.662 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.129 0.871 4 C 0.296 3.704 5 O -0.398 6.398 6 N -0.368 5.368 7 C 0.012 3.988 8 H 0.099 0.901 9 C -0.153 4.153 10 C -0.171 4.171 11 C 0.016 3.984 12 N -0.311 5.311 13 C -0.386 4.386 14 H 0.084 0.916 15 C -0.191 4.191 16 N -0.543 5.543 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.214 1.214 21 C 0.040 3.960 22 C -0.044 4.044 23 C -0.109 4.109 24 C -0.146 4.146 25 C 0.043 3.957 26 F -0.111 7.111 27 C 0.046 3.954 28 F -0.109 7.109 29 C -0.109 4.109 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.225 0.775 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.034 0.966 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.116 3.633 10.869 18.182 hybrid contribution 0.632 -0.496 0.363 0.882 sum -13.484 3.137 11.232 17.828 Atomic orbital electron populations 1.21809 0.91832 1.03171 1.03032 1.20352 0.97748 1.00649 0.90778 0.87130 1.20212 0.80772 0.85034 0.84335 1.90789 1.36553 1.26091 1.86322 1.46039 1.53243 1.31713 1.05847 1.21890 0.97015 0.97850 0.82061 0.90074 1.21669 0.97554 1.00450 0.95667 1.22003 0.98806 1.00235 0.96074 1.20957 0.89226 0.97347 0.90889 1.43961 1.19196 1.64330 1.03654 1.19188 0.88627 1.11206 1.19543 0.91579 1.25002 0.97262 0.95960 1.00917 1.70022 1.32356 1.19819 1.32095 0.86270 0.82048 0.80834 0.77906 1.20175 1.21719 1.21411 1.20997 0.90577 0.94332 0.90138 1.19227 0.96987 0.93188 0.94974 1.20970 0.96323 1.00740 0.92878 1.20991 1.01790 0.92151 0.99662 1.17693 1.00281 0.92175 0.85585 1.91512 1.87429 1.81946 1.50205 1.17613 1.01219 0.79839 0.96697 1.91520 1.91007 1.33644 1.94740 1.20841 1.00461 0.94646 0.94953 0.91175 0.91318 0.91798 0.77481 0.92272 0.93124 0.92632 0.92141 0.96396 0.92631 0.93738 0.88743 0.96611 0.84116 0.83678 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.90 37.16 0.33 -0.74 16 2 C -0.07 -0.79 2.90 -92.93 -0.27 -1.06 16 3 H 0.11 0.95 7.87 -51.93 -0.41 0.54 16 4 C 0.51 8.01 6.99 -10.99 -0.08 7.93 16 5 O -0.52 -10.91 14.79 5.56 0.08 -10.83 16 6 N -0.72 -10.54 4.97 -53.91 -0.27 -10.81 16 7 C 0.12 2.17 2.59 -68.03 -0.18 2.00 16 8 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 9 C -0.12 -1.76 5.36 -26.69 -0.14 -1.90 16 10 C -0.13 -2.16 6.08 -26.62 -0.16 -2.32 16 11 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 12 N -0.59 -14.80 3.00 -172.58 -0.52 -15.32 16 13 C -0.26 -7.19 9.58 -15.06 -0.14 -7.33 16 14 H 0.07 1.82 7.89 -52.48 -0.41 1.41 16 15 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 16 N -0.90 -26.68 11.20 55.49 0.62 -26.06 16 17 Si 0.90 22.65 29.59 -169.99 -5.03 17.62 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 21 C 0.17 3.96 4.86 -3.93 -0.02 3.94 16 22 C -0.04 -0.51 4.39 -104.62 -0.46 -0.97 16 23 C -0.09 -0.95 9.67 -39.59 -0.38 -1.33 16 24 C -0.13 -1.37 10.02 -39.53 -0.40 -1.77 16 25 C 0.06 0.82 7.31 -39.37 -0.29 0.54 16 26 F -0.13 -1.82 17.18 2.25 0.04 -1.78 16 27 C 0.07 0.93 7.31 -39.37 -0.29 0.65 16 28 F -0.13 -1.96 17.18 2.25 0.04 -1.92 16 29 C -0.09 -1.20 7.91 -39.53 -0.31 -1.51 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 32 H 0.06 0.53 7.37 -51.93 -0.38 0.15 16 33 H 0.39 4.29 8.02 -40.82 -0.33 3.96 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.09 2.67 6.04 -51.93 -0.31 2.36 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.14 1.09 7.94 -52.49 -0.42 0.67 16 44 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.14 1.86 7.51 -52.49 -0.39 1.46 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -34.01 373.62 -8.67 -42.68 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.37 Total: 1.65 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.90 Total: -0.88 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.16 Total: -52.18 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.01 -8.67 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009590042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.779 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds